BLASTP 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|239756949 PREDICTED: hypothetical protein [Homo sapiens] (121 letters) Database: hs.faa 37,866 sequences; 18,247,518 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|239756949 PREDICTED: hypothetical protein [Homo sapiens] 247 1e-66 gi|239751436 PREDICTED: hypothetical protein [Homo sapiens] 243 2e-65 gi|239745941 PREDICTED: hypothetical protein [Homo sapiens] 240 2e-64 gi|19924099 synapsin I isoform Ia [Homo sapiens] 38 0.002 gi|19924097 synapsin I isoform Ib [Homo sapiens] 38 0.002 gi|194578898 hypothetical protein LOC100170841 [Homo sapiens] 37 0.005 gi|169163728 PREDICTED: hypothetical protein [Homo sapiens] 36 0.008 gi|169163708 PREDICTED: hypothetical protein [Homo sapiens] 36 0.008 gi|169163019 PREDICTED: hypothetical protein [Homo sapiens] 36 0.008 gi|219804203 rabphilin 3A homolog isoform 1 [Homo sapiens] 35 0.013 gi|45267837 rabphilin 3A homolog isoform 2 [Homo sapiens] 35 0.013 gi|82546872 DNA helicase homolog PIF1 [Homo sapiens] 34 0.030 gi|148596988 mucoepidermoid carcinoma translocated 1 isoform 3 [... 33 0.039 gi|148596965 mucoepidermoid carcinoma translocated 1 isoform 1 [... 33 0.039 gi|41349482 proline-rich protein BstNI subfamily 1 isoform 1 pre... 33 0.039 gi|41349486 proline-rich protein BstNI subfamily 1 isoform 3 pre... 33 0.039 gi|41349484 proline-rich protein BstNI subfamily 1 isoform 2 pre... 33 0.039 gi|160707881 formin 2 [Homo sapiens] 33 0.051 gi|189217919 protein associated with topoisomerase II homolog 1 ... 33 0.067 gi|163965366 nascent polypeptide-associated complex alpha subuni... 33 0.067 gi|23200002 NOL1/NOP2/Sun domain family, member 5C isoform 2 [Ho... 33 0.067 gi|4557853 transcription factor SOX9 [Homo sapiens] 32 0.087 gi|47778921 alpha 1 type XIX collagen precursor [Homo sapiens] 32 0.087 gi|209571537 proline-rich protein BstNI subfamily 2 [Homo sapiens] 32 0.087 gi|111118972 collagen, type XI, alpha 2 isoform 2 preproprotein ... 32 0.11 gi|111118968 collagen, type XI, alpha 2 isoform 3 preproprotein ... 32 0.11 gi|111118970 collagen, type XI, alpha 2 isoform 1 preproprotein ... 32 0.11 gi|32140760 collagen, type XXVII, alpha 1 [Homo sapiens] 32 0.11 gi|156071472 CD2 molecule [Homo sapiens] 32 0.15 gi|169206080 PREDICTED: hypothetical protein LOC100132234 [Homo ... 32 0.15 >gi|239756949 PREDICTED: hypothetical protein [Homo sapiens] Length = 121 Score = 247 bits (631), Expect = 1e-66 Identities = 121/121 (100%), Positives = 121/121 (100%) Query: 1 MLSVPDSRRKPSPHIGQETTSISKLRRKGEVAGGLTGLNSCHLPPIQKARPHPGQTHTSV 60 MLSVPDSRRKPSPHIGQETTSISKLRRKGEVAGGLTGLNSCHLPPIQKARPHPGQTHTSV Sbjct: 1 MLSVPDSRRKPSPHIGQETTSISKLRRKGEVAGGLTGLNSCHLPPIQKARPHPGQTHTSV 60 Query: 61 RLTGGPVLAGKLLAKRPRSPPSPNGERGSAASRSPTAAPQQRPRSPVGGRQELTEAAPLP 120 RLTGGPVLAGKLLAKRPRSPPSPNGERGSAASRSPTAAPQQRPRSPVGGRQELTEAAPLP Sbjct: 61 RLTGGPVLAGKLLAKRPRSPPSPNGERGSAASRSPTAAPQQRPRSPVGGRQELTEAAPLP 120 Query: 121 K 121 K Sbjct: 121 K 121 >gi|239751436 PREDICTED: hypothetical protein [Homo sapiens] Length = 121 Score = 243 bits (620), Expect = 2e-65 Identities = 119/121 (98%), Positives = 119/121 (98%) Query: 1 MLSVPDSRRKPSPHIGQETTSISKLRRKGEVAGGLTGLNSCHLPPIQKARPHPGQTHTSV 60 MLSVPDSRRKPSPHIGQETTSISKLRRKGEVAGGLTGLNSCHLPPIQKARPHPGQTHTSV Sbjct: 1 MLSVPDSRRKPSPHIGQETTSISKLRRKGEVAGGLTGLNSCHLPPIQKARPHPGQTHTSV 60 Query: 61 RLTGGPVLAGKLLAKRPRSPPSPNGERGSAASRSPTAAPQQRPRSPVGGRQELTEAAPLP 120 LTGGPVLAGKLLAKRPRSPPSPNGERGSA SRSPTAAPQQRPRSPVGGRQELTEAAPLP Sbjct: 61 SLTGGPVLAGKLLAKRPRSPPSPNGERGSAESRSPTAAPQQRPRSPVGGRQELTEAAPLP 120 Query: 121 K 121 K Sbjct: 121 K 121 >gi|239745941 PREDICTED: hypothetical protein [Homo sapiens] Length = 121 Score = 240 bits (612), Expect = 2e-64 Identities = 118/121 (97%), Positives = 118/121 (97%) Query: 1 MLSVPDSRRKPSPHIGQETTSISKLRRKGEVAGGLTGLNSCHLPPIQKARPHPGQTHTSV 60 MLSVPDSRRKPSPHIGQETTSISKLRRKGEVAGGLTGLNSCHLPPIQKARPHPGQT TSV Sbjct: 1 MLSVPDSRRKPSPHIGQETTSISKLRRKGEVAGGLTGLNSCHLPPIQKARPHPGQTRTSV 60 Query: 61 RLTGGPVLAGKLLAKRPRSPPSPNGERGSAASRSPTAAPQQRPRSPVGGRQELTEAAPLP 120 LTGGPVLAGKLLAKRPRSPPSPNGERGSA SRSPTAAPQQRPRSPVGGRQELTEAAPLP Sbjct: 61 SLTGGPVLAGKLLAKRPRSPPSPNGERGSAESRSPTAAPQQRPRSPVGGRQELTEAAPLP 120 Query: 121 K 121 K Sbjct: 121 K 121 >gi|19924099 synapsin I isoform Ia [Homo sapiens] Length = 705 Score = 38.1 bits (87), Expect = 0.002 Identities = 29/98 (29%), Positives = 41/98 (41%), Gaps = 23/98 (23%) Query: 44 PPIQKARPHPGQTHTSVRLTGGPVLAGKLLAKRPRSPPSPNGERG--------SAASRSP 95 P Q A P GQ S + GGP G A RP + PSP + G S + +P Sbjct: 518 PASQAAPPTQGQGRQSRPVAGGP---GAPPAARPPASPSPQRQAGPPQATRQTSVSGPAP 574 Query: 96 TAA------------PQQRPRSPVGGRQELTEAAPLPK 121 A P Q+P P G ++ ++A P+P+ Sbjct: 575 PKASGAPPGGQQRQGPPQKPPGPAGPTRQASQAGPVPR 612 Score = 30.8 bits (68), Expect = 0.25 Identities = 27/77 (35%), Positives = 33/77 (42%), Gaps = 6/77 (7%) Query: 44 PPIQKARPHPGQTHTSVRLTGGPVLAGKLLAKRPRSPPSPNGERGSAASRSPTAAPQQRP 103 PP+Q+ P GQ H L+G AG L +R SP S + S A +P Q R Sbjct: 479 PPLQQRPPPQGQQH----LSGLGPPAGSPLPQRLPSPTSAPQQPASQA--APPTQGQGRQ 532 Query: 104 RSPVGGRQELTEAAPLP 120 PV G AA P Sbjct: 533 SRPVAGGPGAPPAARPP 549 Score = 25.8 bits (55), Expect = 8.2 Identities = 15/46 (32%), Positives = 20/46 (43%), Gaps = 3/46 (6%) Query: 75 KRPRSPPSPNGERGSAASRSPTAAPQQRPRSPVGGRQELTEAAPLP 120 +RP+ PP P G A+ P A +R G + AAP P Sbjct: 26 QRPQPPPPPPGAHSPGATPGPGTATAERSS---GVAPAASPAAPSP 68 >gi|19924097 synapsin I isoform Ib [Homo sapiens] Length = 669 Score = 38.1 bits (87), Expect = 0.002 Identities = 29/98 (29%), Positives = 41/98 (41%), Gaps = 23/98 (23%) Query: 44 PPIQKARPHPGQTHTSVRLTGGPVLAGKLLAKRPRSPPSPNGERG--------SAASRSP 95 P Q A P GQ S + GGP G A RP + PSP + G S + +P Sbjct: 518 PASQAAPPTQGQGRQSRPVAGGP---GAPPAARPPASPSPQRQAGPPQATRQTSVSGPAP 574 Query: 96 TAA------------PQQRPRSPVGGRQELTEAAPLPK 121 A P Q+P P G ++ ++A P+P+ Sbjct: 575 PKASGAPPGGQQRQGPPQKPPGPAGPTRQASQAGPVPR 612 Score = 30.8 bits (68), Expect = 0.25 Identities = 27/77 (35%), Positives = 33/77 (42%), Gaps = 6/77 (7%) Query: 44 PPIQKARPHPGQTHTSVRLTGGPVLAGKLLAKRPRSPPSPNGERGSAASRSPTAAPQQRP 103 PP+Q+ P GQ H L+G AG L +R SP S + S A +P Q R Sbjct: 479 PPLQQRPPPQGQQH----LSGLGPPAGSPLPQRLPSPTSAPQQPASQA--APPTQGQGRQ 532 Query: 104 RSPVGGRQELTEAAPLP 120 PV G AA P Sbjct: 533 SRPVAGGPGAPPAARPP 549 Score = 25.8 bits (55), Expect = 8.2 Identities = 15/46 (32%), Positives = 20/46 (43%), Gaps = 3/46 (6%) Query: 75 KRPRSPPSPNGERGSAASRSPTAAPQQRPRSPVGGRQELTEAAPLP 120 +RP+ PP P G A+ P A +R G + AAP P Sbjct: 26 QRPQPPPPPPGAHSPGATPGPGTATAERSS---GVAPAASPAAPSP 68 >gi|194578898 hypothetical protein LOC100170841 [Homo sapiens] Length = 379 Score = 36.6 bits (83), Expect = 0.005 Identities = 32/103 (31%), Positives = 41/103 (39%), Gaps = 18/103 (17%) Query: 11 PSPHIGQETTSISKLRRKGEVAGG----LTGLNSCHLPPIQKARPHPGQTHTSVRLTGGP 66 P+ G++ + RR E GG G+ SC P A PHP ++ TS Sbjct: 100 PNTAAGEDADVAACPRRGEEEEGGGGFPHFGVRSCAPPGRCPAPPHPRESTTS------- 152 Query: 67 VLAGKLLAKRPRSPPSPNGERGSAASRSPTAAPQQRPRSPVGG 109 + PR P +RG AAS P P RP SP G Sbjct: 153 -----FASAPPRPAPGLEPQRGPAAS--PPQEPSSRPPSPPAG 188 >gi|169163728 PREDICTED: hypothetical protein [Homo sapiens] Length = 237 Score = 35.8 bits (81), Expect = 0.008 Identities = 35/117 (29%), Positives = 46/117 (39%), Gaps = 17/117 (14%) Query: 9 RKPSPHIGQETTSISKLRRKGEVAGGLTGLNSCHLPPIQKARPHPGQTHTSVRLTGGPVL 68 R PSP + + RR+G L G + P AR P + + R P Sbjct: 35 RPPSP--------VGRARRRGTWLRVLRGPRAPSPAPALPARARPPREN---RKRAVPAR 83 Query: 69 AGKLLAKRPRSPPSPNGERGSAASRSPTAAPQQ------RPRSPVGGRQELTEAAPL 119 A + KRP + E S RS P++ RPR G R+ L EAAPL Sbjct: 84 AARGPPKRPAGGQTGGVEAASGEERSQPRRPRRPPPAPRRPRPAPGRRKSLYEAAPL 140 >gi|169163708 PREDICTED: hypothetical protein [Homo sapiens] Length = 237 Score = 35.8 bits (81), Expect = 0.008 Identities = 35/117 (29%), Positives = 46/117 (39%), Gaps = 17/117 (14%) Query: 9 RKPSPHIGQETTSISKLRRKGEVAGGLTGLNSCHLPPIQKARPHPGQTHTSVRLTGGPVL 68 R PSP + + RR+G L G + P AR P + + R P Sbjct: 35 RPPSP--------VGRARRRGTWLRVLRGPRAPSPAPALPARARPPREN---RKRAVPAR 83 Query: 69 AGKLLAKRPRSPPSPNGERGSAASRSPTAAPQQ------RPRSPVGGRQELTEAAPL 119 A + KRP + E S RS P++ RPR G R+ L EAAPL Sbjct: 84 AARGPPKRPAGGQTGGVEAASGEERSQPRRPRRPPPAPRRPRPAPGRRKSLYEAAPL 140 >gi|169163019 PREDICTED: hypothetical protein [Homo sapiens] Length = 237 Score = 35.8 bits (81), Expect = 0.008 Identities = 35/117 (29%), Positives = 46/117 (39%), Gaps = 17/117 (14%) Query: 9 RKPSPHIGQETTSISKLRRKGEVAGGLTGLNSCHLPPIQKARPHPGQTHTSVRLTGGPVL 68 R PSP + + RR+G L G + P AR P + + R P Sbjct: 35 RPPSP--------VGRARRRGTWLRVLRGPRAPSPAPALPARARPPREN---RKRAVPAR 83 Query: 69 AGKLLAKRPRSPPSPNGERGSAASRSPTAAPQQ------RPRSPVGGRQELTEAAPL 119 A + KRP + E S RS P++ RPR G R+ L EAAPL Sbjct: 84 AARGPPKRPAGGQTGGVEAASGEERSQPRRPRRPPPAPRRPRPAPGRRKSLYEAAPL 140 >gi|219804203 rabphilin 3A homolog isoform 1 [Homo sapiens] Length = 694 Score = 35.0 bits (79), Expect = 0.013 Identities = 33/113 (29%), Positives = 41/113 (36%), Gaps = 12/113 (10%) Query: 16 GQETTSISKLRRKGEVAGGLTGLNSCHLPPIQKARPHPGQTHTSVRLTGGPVLAGKLLAK 75 G + S + LRR V S P A P PGQ T GP AG+ + Sbjct: 258 GDSSRSPAGLRRANSVQASRPAPGSVQSP----APPQPGQPGTPGGSRPGPGPAGRFPDQ 313 Query: 76 RPRSPPS-------PNGER-GSAASRSPTAAPQQRPRSPVGGRQELTEAAPLP 120 +P PS P ER G A + R P G + + AAP P Sbjct: 314 KPEVAPSDPGTTAPPREERTGGVGGYPAVGAREDRMSHPSGPYSQASAAAPQP 366 >gi|45267837 rabphilin 3A homolog isoform 2 [Homo sapiens] Length = 690 Score = 35.0 bits (79), Expect = 0.013 Identities = 33/113 (29%), Positives = 41/113 (36%), Gaps = 12/113 (10%) Query: 16 GQETTSISKLRRKGEVAGGLTGLNSCHLPPIQKARPHPGQTHTSVRLTGGPVLAGKLLAK 75 G + S + LRR V S P A P PGQ T GP AG+ + Sbjct: 254 GDSSRSPAGLRRANSVQASRPAPGSVQSP----APPQPGQPGTPGGSRPGPGPAGRFPDQ 309 Query: 76 RPRSPPS-------PNGER-GSAASRSPTAAPQQRPRSPVGGRQELTEAAPLP 120 +P PS P ER G A + R P G + + AAP P Sbjct: 310 KPEVAPSDPGTTAPPREERTGGVGGYPAVGAREDRMSHPSGPYSQASAAAPQP 362 >gi|82546872 DNA helicase homolog PIF1 [Homo sapiens] Length = 641 Score = 33.9 bits (76), Expect = 0.030 Identities = 26/64 (40%), Positives = 30/64 (46%), Gaps = 8/64 (12%) Query: 65 GPVLA-GKLLAKRPR-----SPPSPNGERGSAASRSPTAAPQQRPRSPVGGRQELTEAA- 117 GP A +LL RPR SP P R AA+R P +RP P G + TEA Sbjct: 131 GPASARAQLLGPRPRDFVTISPVQPEERRLRAATRVPDTTLVKRPVEPQAGAEPSTEAPR 190 Query: 118 -PLP 120 PLP Sbjct: 191 WPLP 194 >gi|148596988 mucoepidermoid carcinoma translocated 1 isoform 3 [Homo sapiens] Length = 650 Score = 33.5 bits (75), Expect = 0.039 Identities = 21/64 (32%), Positives = 28/64 (43%), Gaps = 9/64 (14%) Query: 44 PPIQKARPHPGQTHTSVRL-TGGPVLAGKLLAKRPRSPPSPNGERGSAASRSPTAAPQQR 102 PP + P P VRL GGP+L L + P+ PP A P++ PQ Sbjct: 390 PPASQQPPPPPPPQAPVRLPPGGPLLPSASLTRGPQPPP--------LAVTVPSSLPQSP 441 Query: 103 PRSP 106 P +P Sbjct: 442 PENP 445 >gi|148596965 mucoepidermoid carcinoma translocated 1 isoform 1 [Homo sapiens] Length = 634 Score = 33.5 bits (75), Expect = 0.039 Identities = 21/64 (32%), Positives = 28/64 (43%), Gaps = 9/64 (14%) Query: 44 PPIQKARPHPGQTHTSVRL-TGGPVLAGKLLAKRPRSPPSPNGERGSAASRSPTAAPQQR 102 PP + P P VRL GGP+L L + P+ PP A P++ PQ Sbjct: 374 PPASQQPPPPPPPQAPVRLPPGGPLLPSASLTRGPQPPP--------LAVTVPSSLPQSP 425 Query: 103 PRSP 106 P +P Sbjct: 426 PENP 429 >gi|41349482 proline-rich protein BstNI subfamily 1 isoform 1 preproprotein [Homo sapiens] Length = 331 Score = 33.5 bits (75), Expect = 0.039 Identities = 22/64 (34%), Positives = 24/64 (37%), Gaps = 10/64 (15%) Query: 47 QKARPHPGQTHTSVRLTGGPVLAGKLLAKRPRSPPSPNGERGSAASRSPTAAPQQRPRSP 106 Q AR PG+ G P G P+ PP P G P PQ PR P Sbjct: 272 QSARSPPGKPQ------GPPQQEGN----NPQGPPPPAGGNPQQPQAPPAGQPQGPPRPP 321 Query: 107 VGGR 110 GGR Sbjct: 322 QGGR 325 Score = 30.0 bits (66), Expect = 0.43 Identities = 24/75 (32%), Positives = 30/75 (40%), Gaps = 13/75 (17%) Query: 44 PPIQKARPHPGQTHTSVRLTGGPVLAGKLLAKRPRSPPSPNGERG-------SAASRSPT 96 PP Q G + G P GK +P+ PP P +G S +S+SP Sbjct: 161 PPPQGGNQPQGPPPPPGKPQGPPPQGGK----KPQGPPPPGKPQGPPPQGDKSRSSQSPP 216 Query: 97 AAPQQRPRSPVGGRQ 111 PQ P P GG Q Sbjct: 217 GKPQGPP--PQGGNQ 229 Score = 28.9 bits (63), Expect = 0.97 Identities = 24/75 (32%), Positives = 28/75 (37%), Gaps = 13/75 (17%) Query: 44 PPIQKARPHPGQTHTSVRLTGGPVLAGKLLAKRPRSPPSPNGERG-------SAASRSPT 96 PP Q G + G P G RP+ PP P +G S + RSP Sbjct: 100 PPPQGGNQPQGPPPPPGKPQGPPPQGGN----RPQGPPPPGKPQGPPPQGDKSRSPRSPP 155 Query: 97 AAPQQRPRSPVGGRQ 111 PQ P P GG Q Sbjct: 156 GKPQGPP--PQGGNQ 168 Score = 26.6 bits (57), Expect = 4.8 Identities = 16/43 (37%), Positives = 20/43 (46%), Gaps = 9/43 (20%) Query: 76 RPRSPPSPNGERG-------SAASRSPTAAPQQRPRSPVGGRQ 111 +P+ PP P +G S + RSP PQ P P GG Q Sbjct: 67 KPQGPPPPGKPQGPPPQGDKSRSPRSPPGKPQGPP--PQGGNQ 107 >gi|41349486 proline-rich protein BstNI subfamily 1 isoform 3 preproprotein [Homo sapiens] Length = 178 Score = 33.5 bits (75), Expect = 0.039 Identities = 22/64 (34%), Positives = 24/64 (37%), Gaps = 10/64 (15%) Query: 47 QKARPHPGQTHTSVRLTGGPVLAGKLLAKRPRSPPSPNGERGSAASRSPTAAPQQRPRSP 106 Q AR PG+ G P G P+ PP P G P PQ PR P Sbjct: 119 QSARSPPGKPQ------GPPQQEGN----NPQGPPPPAGGNPQQPQAPPAGQPQGPPRPP 168 Query: 107 VGGR 110 GGR Sbjct: 169 QGGR 172 Score = 25.8 bits (55), Expect = 8.2 Identities = 15/44 (34%), Positives = 21/44 (47%), Gaps = 9/44 (20%) Query: 76 RPRSPPSPNGERG-------SAASRSPTAAPQQRPRSPVGGRQE 112 +P+ PP P +G S + RSP PQ P P GG+ + Sbjct: 67 KPQGPPPPGKPQGPPPQGDKSRSPRSPPGKPQGPP--PQGGKPQ 108 >gi|41349484 proline-rich protein BstNI subfamily 1 isoform 2 preproprotein [Homo sapiens] Length = 198 Score = 33.5 bits (75), Expect = 0.039 Identities = 22/64 (34%), Positives = 24/64 (37%), Gaps = 10/64 (15%) Query: 47 QKARPHPGQTHTSVRLTGGPVLAGKLLAKRPRSPPSPNGERGSAASRSPTAAPQQRPRSP 106 Q AR PG+ G P G P+ PP P G P PQ PR P Sbjct: 139 QSARSPPGKPQ------GPPQQEGN----NPQGPPPPAGGNPQQPQAPPAGQPQGPPRPP 188 Query: 107 VGGR 110 GGR Sbjct: 189 QGGR 192 Score = 25.8 bits (55), Expect = 8.2 Identities = 15/44 (34%), Positives = 21/44 (47%), Gaps = 9/44 (20%) Query: 76 RPRSPPSPNGERG-------SAASRSPTAAPQQRPRSPVGGRQE 112 +P+ PP P +G S + RSP PQ P P GG+ + Sbjct: 67 KPQGPPPPGKPQGPPPQGDKSRSPRSPPGKPQGPP--PQGGKPQ 108 >gi|160707881 formin 2 [Homo sapiens] Length = 1722 Score = 33.1 bits (74), Expect = 0.051 Identities = 29/88 (32%), Positives = 34/88 (38%), Gaps = 3/88 (3%) Query: 33 GGLTGLNSCHLPPIQKARPHPGQTHTSVRLTGGPVLAGKLLA--KRPRSPPSPNGERGSA 90 G GL+ L P A PG T L+ L L A + P+ PPSP G S Sbjct: 244 GAFLGLDRFLLGPSGGAGEAPGSPDTEQALSALSDLPESLAAEPREPQQPPSPGGLPVSE 303 Query: 91 ASRSPTAAPQQRPRSPVGGRQELTEAAP 118 A P A P + SP EA P Sbjct: 304 APSLPAAQPAAKD-SPSSTAFPFPEAGP 330 >gi|189217919 protein associated with topoisomerase II homolog 1 [Homo sapiens] Length = 770 Score = 32.7 bits (73), Expect = 0.067 Identities = 36/123 (29%), Positives = 47/123 (38%), Gaps = 14/123 (11%) Query: 1 MLSVPDSRRKPSPHIGQETTSISKLRRKGEVAGGLTGLNSCHLPPIQKARPHPGQTHTSV 60 + SVP+S P +S L+R ++ GG +Q R P Q Sbjct: 237 LCSVPNSSLLGHPFPPSVPPVLSPLQR-AQLLGGAQ---------LQPGRMSPSQFARVP 286 Query: 61 RLTGGPVLA--GKLLAKRPRS--PPSPNGERGSAASRSPTAAPQQRPRSPVGGRQELTEA 116 G P+ A KLL R PP+P +A S T PQQ P P Q L Sbjct: 287 GFVGSPLAAMNPKLLQGRVGQMLPPAPGFRAFFSAPPSATPPPQQHPPGPGPHLQNLRSQ 346 Query: 117 APL 119 AP+ Sbjct: 347 APM 349 >gi|163965366 nascent polypeptide-associated complex alpha subunit isoform a [Homo sapiens] Length = 2078 Score = 32.7 bits (73), Expect = 0.067 Identities = 29/123 (23%), Positives = 44/123 (35%), Gaps = 8/123 (6%) Query: 1 MLSVPDSRRKPSPHIGQETTSISKLRRKGEVAGGLTGLNSCHLPPIQKARPHPGQTHTSV 60 ++++P + P+ ++ ++S + A P K P P T Sbjct: 890 VVNLPFPKEGPATPAPKQAPALSMTSSSPKKARATPAPKGIPASPSPKGAPTPPAA-TPP 948 Query: 61 RLTGGPVLAGKLLAKRP--RSPPSPNGERGSAASRSPTAAPQQRPRSPVGGRQELTEAAP 118 GGP A P +PPSP G + + + P P SP GG A P Sbjct: 949 SPKGGPATPSPKWAPTPPAATPPSPKGGPATPSPKGAPTPPAATPPSPKGG-----PATP 1003 Query: 119 LPK 121 PK Sbjct: 1004 SPK 1006 Score = 32.3 bits (72), Expect = 0.087 Identities = 33/121 (27%), Positives = 42/121 (34%), Gaps = 9/121 (7%) Query: 3 SVPDSRRKPSPHIGQETTSISKLRRKGEVAGGLTGLNSCHLPPIQKARPHPGQTHTSVRL 62 S P + PSP T + K A + P ++ A P T S + Sbjct: 1033 STPPAATPPSPKGSPAATPLPKGAPTTPAATLPSPKGGPATPSLKGAPTPPAATPPSPK- 1091 Query: 63 TGGPVLAGKLLAKRP--RSPPSPNGERGSAASRSPTAAPQQRPRSPVGGRQELTEAAPLP 120 GGP A P +PPSP G + + P P SP GG A P P Sbjct: 1092 -GGPATPSPKGAPMPPAATPPSPKGGLATPPHKGAPTTPAATPPSPKGGL-----ATPPP 1145 Query: 121 K 121 K Sbjct: 1146 K 1146 Score = 30.4 bits (67), Expect = 0.33 Identities = 21/66 (31%), Positives = 26/66 (39%), Gaps = 3/66 (4%) Query: 45 PIQKARPHPGQTHTSVRLTGGPVLAGKLLAKRP--RSPPSPNGERGSAASRSPTAAPQQR 102 P K P+P T GGP + A P +PPSP G G+ + P Sbjct: 1281 PPHKGAPNPAVV-TPPSPKGGPATSPPKGAPTPPAATPPSPKGSPGTPPPKGAPTPPAVT 1339 Query: 103 PRSPVG 108 P SP G Sbjct: 1340 PPSPKG 1345 Score = 29.6 bits (65), Expect = 0.57 Identities = 30/108 (27%), Positives = 38/108 (35%), Gaps = 5/108 (4%) Query: 5 PDSRRKPSPHIGQETTSISKLRRKGEVAGGLTGLNSCHLPPIQKARPH-PGQTHTSVRLT 63 P + PSP T K A + S P+ K P P T S + Sbjct: 1011 PPAVTPPSPKGSPAATPFPKGASTPPAATPPSPKGSPAATPLPKGAPTTPAATLPSPK-- 1068 Query: 64 GGPVLAGKLLAKRP--RSPPSPNGERGSAASRSPTAAPQQRPRSPVGG 109 GGP A P +PPSP G + + + P P SP GG Sbjct: 1069 GGPATPSLKGAPTPPAATPPSPKGGPATPSPKGAPMPPAATPPSPKGG 1116 Score = 28.5 bits (62), Expect = 1.3 Identities = 27/88 (30%), Positives = 31/88 (35%), Gaps = 14/88 (15%) Query: 44 PPIQK---ARPHPGQTHTSVRLT-----GGPVLAGKLLAKRP--RSPPSPNGERGSAASR 93 PP K A P P T T GGP A P +PPSP G + + + Sbjct: 947 PPSPKGGPATPSPKWAPTPPAATPPSPKGGPATPSPKGAPTPPAATPPSPKGGPATPSPK 1006 Query: 94 SPTAAPQQRPRSPVGGRQELTEAAPLPK 121 P P SP G A P PK Sbjct: 1007 GAPTPPAVTPPSPKGS----PAATPFPK 1030 Score = 28.5 bits (62), Expect = 1.3 Identities = 27/89 (30%), Positives = 33/89 (37%), Gaps = 17/89 (19%) Query: 44 PPIQK---ARPHPGQTHTSVRLTGGPVLAGKLLAKRPR--------SPPSPNGERGSAAS 92 PP K A P P T+ T P G L P+ +PPSP G + + Sbjct: 1179 PPSPKGGLATPSPKGAPTTPAATP-PSPKGGLATPSPKGAPTTPAATPPSPKGGLATPSP 1237 Query: 93 RSPTAAPQQRPRSPVGGRQELTEAAPLPK 121 + P P SP GG A P PK Sbjct: 1238 KGAPTTPAATPPSPKGG-----PATPPPK 1261 Score = 28.1 bits (61), Expect = 1.6 Identities = 23/79 (29%), Positives = 27/79 (34%), Gaps = 15/79 (18%) Query: 51 PHPGQTHTSVRLTGGPVLAGKLLAKRPR--------SPPSPNGERGSAASRSPTAAPQQR 102 PH G T P G L P+ +PPSP G + + P Sbjct: 1121 PHKGAPTTPAATPPSP--KGGLATPPPKGAPTTPAATPPSPKGGLATPPPKGAPTTPAAT 1178 Query: 103 PRSPVGGRQELTEAAPLPK 121 P SP GG A P PK Sbjct: 1179 PPSPKGGL-----ATPSPK 1192 Score = 28.1 bits (61), Expect = 1.6 Identities = 15/43 (34%), Positives = 19/43 (44%), Gaps = 5/43 (11%) Query: 79 SPPSPNGERGSAASRSPTAAPQQRPRSPVGGRQELTEAAPLPK 121 +PPSP G + + + P P SP GG A P PK Sbjct: 1178 TPPSPKGGLATPSPKGAPTTPAATPPSPKGGL-----ATPSPK 1215 >gi|23200002 NOL1/NOP2/Sun domain family, member 5C isoform 2 [Homo sapiens] Length = 291 Score = 32.7 bits (73), Expect = 0.067 Identities = 29/107 (27%), Positives = 46/107 (42%), Gaps = 15/107 (14%) Query: 11 PSPHIGQETTSISKLRRKGEVAGGLT-GLNSCHLPPIQKARPH------PGQTHT----- 58 PSP + S+ + + V L + L P ARPH PG H Sbjct: 142 PSPRLVYSMCSLCQEENEDMVQDALQQNPGAFRLAPALPARPHRGLSTFPGAEHCLRASP 201 Query: 59 SVRLTGGPVLAGKLLAKRPRSPPSPNGERGSAASRSPTAAPQQRPRS 105 L+GG +A + +R P S + + SA R+P+ AP+++ R+ Sbjct: 202 KTTLSGGFFVA---VIERVEMPTSASQAKASAPERTPSPAPKRKKRA 245 >gi|4557853 transcription factor SOX9 [Homo sapiens] Length = 509 Score = 32.3 bits (72), Expect = 0.087 Identities = 26/81 (32%), Positives = 34/81 (41%), Gaps = 20/81 (24%) Query: 42 HLPPIQKARPHPG--QTHTSVRLTGG---------PVLAGKLLAKRPRSPPSPNGERGSA 90 +LPP HPG TH V TG P AG + + ++PP P + A Sbjct: 297 YLPP----NGHPGVPATHGQVTYTGSYGISSTAATPASAGHVWMSKQQAPPPPPQQPPQA 352 Query: 91 -----ASRSPTAAPQQRPRSP 106 A P AAP Q+P +P Sbjct: 353 PPAPQAPPQPQAAPPQQPAAP 373 >gi|47778921 alpha 1 type XIX collagen precursor [Homo sapiens] Length = 1142 Score = 32.3 bits (72), Expect = 0.087 Identities = 27/92 (29%), Positives = 32/92 (34%), Gaps = 3/92 (3%) Query: 18 ETTSISKLRRKGEVA-GGLTGLNSCHLPPIQKARPHPGQTHTSVRLTGGPVLAGKLLAKR 76 ET + KG+ A GL G N P P G P L G L + Sbjct: 338 ETGEKGEQGEKGDPALAGLNGENGLKGDLGPHGPPGPKGEKGDTGPPGPPALPGSLGIQG 397 Query: 77 PRSPPSPNGERGSAASRSPTAAPQQRPRSPVG 108 P+ PP G+RG P P P P G Sbjct: 398 PQGPPGKEGQRGRRGKTGPPGKP--GPPGPPG 427 Score = 26.2 bits (56), Expect = 6.3 Identities = 13/36 (36%), Positives = 15/36 (41%) Query: 64 GGPVLAGKLLAKRPRSPPSPNGERGSAASRSPTAAP 99 G P L G A P PP G GS + P +P Sbjct: 968 GKPGLTGMKGAIGPMGPPGNKGSMGSPGHQGPPGSP 1003 >gi|209571537 proline-rich protein BstNI subfamily 2 [Homo sapiens] Length = 416 Score = 32.3 bits (72), Expect = 0.087 Identities = 26/68 (38%), Positives = 31/68 (45%), Gaps = 11/68 (16%) Query: 44 PPIQKARPHPGQTHTSVRLTGGPVLAGKLLAKRPRSPPSPNGERGSAASRSPTAAPQQRP 103 PP K + P Q + GP GK P+ PP P G+ S +SRSP PQ P Sbjct: 134 PPPGKPQGPPPQGGNKPQ---GPPPPGK-----PQGPP-PQGDNKSRSSRSPPGKPQGPP 184 Query: 104 RSPVGGRQ 111 P GG Q Sbjct: 185 --PQGGNQ 190 Score = 32.3 bits (72), Expect = 0.087 Identities = 23/70 (32%), Positives = 26/70 (37%), Gaps = 3/70 (4%) Query: 44 PPIQKARPHP--GQTHTSVRLTGG-PVLAGKLLAKRPRSPPSPNGERGSAASRSPTAAPQ 100 PP + P P G S R G P + P+ PP P G P PQ Sbjct: 341 PPGKPQGPPPQGGSKSRSARSPPGKPQGPPQQEGNNPQGPPPPAGGNPQQPQAPPAGQPQ 400 Query: 101 QRPRSPVGGR 110 PR P GGR Sbjct: 401 GPPRPPQGGR 410 Score = 31.2 bits (69), Expect = 0.19 Identities = 25/68 (36%), Positives = 31/68 (45%), Gaps = 11/68 (16%) Query: 44 PPIQKARPHPGQTHTSVRLTGGPVLAGKLLAKRPRSPPSPNGERGSAASRSPTAAPQQRP 103 PP K + P Q + GP GK P+ PP P G+ S ++RSP PQ P Sbjct: 196 PPPGKPQGPPPQGGNKPQ---GPPPPGK-----PQGPP-PQGDNKSQSARSPPGKPQGPP 246 Query: 104 RSPVGGRQ 111 P GG Q Sbjct: 247 --PQGGNQ 252 Score = 30.4 bits (67), Expect = 0.33 Identities = 26/68 (38%), Positives = 30/68 (44%), Gaps = 11/68 (16%) Query: 44 PPIQKARPHPGQTHTSVRLTGGPVLAGKLLAKRPRSPPSPNGERGSAASRSPTAAPQQRP 103 PP K + P Q + GP GK P+ PP P G S +SRSP PQ P Sbjct: 258 PPPGKPQGPPPQGGNKPQ---GPPPPGK-----PQGPP-PQGGSKSRSSRSPPGKPQGPP 308 Query: 104 RSPVGGRQ 111 P GG Q Sbjct: 309 --PQGGNQ 314 Score = 27.7 bits (60), Expect = 2.2 Identities = 23/75 (30%), Positives = 28/75 (37%), Gaps = 13/75 (17%) Query: 44 PPIQKARPHPGQTHTSVRLTGGPVLAGKLLAKRPRSPPSPNGERG-------SAASRSPT 96 PP Q G + G P G +P+ PP P +G S + RSP Sbjct: 60 PPPQGGNQPQGPPPPPGKPQGPPPQGGN----KPQGPPPPGKPQGPPPQGDKSRSPRSPP 115 Query: 97 AAPQQRPRSPVGGRQ 111 PQ P P GG Q Sbjct: 116 GKPQGPP--PQGGNQ 128 >gi|111118972 collagen, type XI, alpha 2 isoform 2 preproprotein [Homo sapiens] Length = 1650 Score = 32.0 bits (71), Expect = 0.11 Identities = 19/50 (38%), Positives = 22/50 (44%), Gaps = 1/50 (2%) Query: 64 GGPVLAGKLLAKRPRSPPSPNGERGSAASRSPTAAP-QQRPRSPVGGRQE 112 GGP L G P P GERG+A S P P + P+ P G E Sbjct: 911 GGPGLKGNEGPSGPPGPAGSPGERGAAGSGGPIGPPGRPGPQGPPGAAGE 960 >gi|111118968 collagen, type XI, alpha 2 isoform 3 preproprotein [Homo sapiens] Length = 1629 Score = 32.0 bits (71), Expect = 0.11 Identities = 19/50 (38%), Positives = 22/50 (44%), Gaps = 1/50 (2%) Query: 64 GGPVLAGKLLAKRPRSPPSPNGERGSAASRSPTAAP-QQRPRSPVGGRQE 112 GGP L G P P GERG+A S P P + P+ P G E Sbjct: 890 GGPGLKGNEGPSGPPGPAGSPGERGAAGSGGPIGPPGRPGPQGPPGAAGE 939 >gi|111118970 collagen, type XI, alpha 2 isoform 1 preproprotein [Homo sapiens] Length = 1736 Score = 32.0 bits (71), Expect = 0.11 Identities = 19/50 (38%), Positives = 22/50 (44%), Gaps = 1/50 (2%) Query: 64 GGPVLAGKLLAKRPRSPPSPNGERGSAASRSPTAAP-QQRPRSPVGGRQE 112 GGP L G P P GERG+A S P P + P+ P G E Sbjct: 997 GGPGLKGNEGPSGPPGPAGSPGERGAAGSGGPIGPPGRPGPQGPPGAAGE 1046 >gi|32140760 collagen, type XXVII, alpha 1 [Homo sapiens] Length = 1860 Score = 32.0 bits (71), Expect = 0.11 Identities = 17/43 (39%), Positives = 21/43 (48%), Gaps = 1/43 (2%) Query: 64 GGPVLAGKLLAKRPRSPPSPNGERGSAASRSPTAAPQQRPRSP 106 G P + G + PR P P GE+GS + P PQ RP P Sbjct: 1054 GPPGMRGAKGRRGPRGPDGPAGEQGSRGLKGP-PGPQGRPGRP 1095 Score = 28.9 bits (63), Expect = 0.97 Identities = 15/41 (36%), Positives = 17/41 (41%), Gaps = 2/41 (4%) Query: 77 PRSPPSPNGERGSAASRSPTAAPQQRP--RSPVGGRQELTE 115 P PP P GE+G P P R PVG R + E Sbjct: 1319 PLGPPGPKGEKGEQGEDGKAEGPPGPPGDRGPVGDRGDRGE 1359 Score = 26.2 bits (56), Expect = 6.3 Identities = 28/96 (29%), Positives = 35/96 (36%), Gaps = 21/96 (21%) Query: 34 GLTGLNSCHLPP-------IQKARPHPGQTHTSVRLTGGPVLAGKLLAKRPRSPPSPNGE 86 G+ GL PP IQ R PG L G + G L P P P G+ Sbjct: 1538 GMAGLFGPKGPPGDIGFKGIQGPRGPPG-------LMGKEGIVGPLGILGPSGLPGPKGD 1590 Query: 87 RGSAAS---RSPTAAPQQR----PRSPVGGRQELTE 115 +GS + P P R P P GG +L + Sbjct: 1591 KGSRGDWGLQGPRGPPGPRGRPGPPGPPGGPIQLQQ 1626 >gi|156071472 CD2 molecule [Homo sapiens] Length = 351 Score = 31.6 bits (70), Expect = 0.15 Identities = 17/49 (34%), Positives = 22/49 (44%), Gaps = 7/49 (14%) Query: 80 PPSPNGERGSAASRSPTAA-------PQQRPRSPVGGRQELTEAAPLPK 121 PP P G R A S P PQ+RP +P G + + PLP+ Sbjct: 282 PPPPPGHRSQAPSHRPPPPGHRVQHQPQKRPPAPSGTQVHQQKGPPLPR 330 Score = 28.9 bits (63), Expect = 0.97 Identities = 17/68 (25%), Positives = 28/68 (41%), Gaps = 1/68 (1%) Query: 45 PIQKARPHPGQTHTSVRLTGGPVLAGKLLAKRPRS-PPSPNGERGSAASRSPTAAPQQRP 103 P P P H S + P G + +P+ PP+P+G + P P+ +P Sbjct: 276 PATSQHPPPPPGHRSQAPSHRPPPPGHRVQHQPQKRPPAPSGTQVHQQKGPPLPRPRVQP 335 Query: 104 RSPVGGRQ 111 + P G + Sbjct: 336 KPPHGAAE 343 >gi|169206080 PREDICTED: hypothetical protein LOC100132234 [Homo sapiens] Length = 202 Score = 31.6 bits (70), Expect = 0.15 Identities = 22/65 (33%), Positives = 28/65 (43%), Gaps = 7/65 (10%) Query: 61 RLTGGPVLAGKLLAKRPRSPP-SPNGERG------SAASRSPTAAPQQRPRSPVGGRQEL 113 RL P + LA+RP PP P G G +AA +P P RP S + R + Sbjct: 89 RLPPRPTRSPAPLARRPGKPPRRPKGAAGHPSAPPAAAPAAPAQPPAPRPESQLSDRPQS 148 Query: 114 TEAAP 118 E P Sbjct: 149 WEQKP 153 Database: hs.faa Posted date: Aug 4, 2009 4:42 PM Number of letters in database: 18,247,518 Number of sequences in database: 37,866 Lambda K H 0.310 0.130 0.383 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 6,256,304 Number of Sequences: 37866 Number of extensions: 361798 Number of successful extensions: 3194 Number of sequences better than 10.0: 30 Number of HSP's better than 10.0 without gapping: 147 Number of HSP's successfully gapped in prelim test: 266 Number of HSP's that attempted gapping in prelim test: 2500 Number of HSP's gapped (non-prelim): 930 length of query: 121 length of database: 18,247,518 effective HSP length: 89 effective length of query: 32 effective length of database: 14,877,444 effective search space: 476078208 effective search space used: 476078208 T: 11 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.7 bits) S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.