Guide to the Human Genome
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Search of human proteins with 239756949

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|239756949 PREDICTED: hypothetical protein [Homo sapiens]
         (121 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|239756949 PREDICTED: hypothetical protein [Homo sapiens]           247   1e-66
gi|239751436 PREDICTED: hypothetical protein [Homo sapiens]           243   2e-65
gi|239745941 PREDICTED: hypothetical protein [Homo sapiens]           240   2e-64
gi|19924099 synapsin I isoform Ia [Homo sapiens]                       38   0.002
gi|19924097 synapsin I isoform Ib [Homo sapiens]                       38   0.002
gi|194578898 hypothetical protein LOC100170841 [Homo sapiens]          37   0.005
gi|169163728 PREDICTED: hypothetical protein [Homo sapiens]            36   0.008
gi|169163708 PREDICTED: hypothetical protein [Homo sapiens]            36   0.008
gi|169163019 PREDICTED: hypothetical protein [Homo sapiens]            36   0.008
gi|219804203 rabphilin 3A homolog isoform 1 [Homo sapiens]             35   0.013
gi|45267837 rabphilin 3A homolog isoform 2 [Homo sapiens]              35   0.013
gi|82546872 DNA helicase homolog PIF1 [Homo sapiens]                   34   0.030
gi|148596988 mucoepidermoid carcinoma translocated 1 isoform 3 [...    33   0.039
gi|148596965 mucoepidermoid carcinoma translocated 1 isoform 1 [...    33   0.039
gi|41349482 proline-rich protein BstNI subfamily 1 isoform 1 pre...    33   0.039
gi|41349486 proline-rich protein BstNI subfamily 1 isoform 3 pre...    33   0.039
gi|41349484 proline-rich protein BstNI subfamily 1 isoform 2 pre...    33   0.039
gi|160707881 formin 2 [Homo sapiens]                                   33   0.051
gi|189217919 protein associated with topoisomerase II homolog 1 ...    33   0.067
gi|163965366 nascent polypeptide-associated complex alpha subuni...    33   0.067
gi|23200002 NOL1/NOP2/Sun domain family, member 5C isoform 2 [Ho...    33   0.067
gi|4557853 transcription factor SOX9 [Homo sapiens]                    32   0.087
gi|47778921 alpha 1 type XIX collagen precursor [Homo sapiens]         32   0.087
gi|209571537 proline-rich protein BstNI subfamily 2 [Homo sapiens]     32   0.087
gi|111118972 collagen, type XI, alpha 2 isoform 2 preproprotein ...    32   0.11 
gi|111118968 collagen, type XI, alpha 2 isoform 3 preproprotein ...    32   0.11 
gi|111118970 collagen, type XI, alpha 2 isoform 1 preproprotein ...    32   0.11 
gi|32140760 collagen, type XXVII, alpha 1 [Homo sapiens]               32   0.11 
gi|156071472 CD2 molecule [Homo sapiens]                               32   0.15 
gi|169206080 PREDICTED: hypothetical protein LOC100132234 [Homo ...    32   0.15 

>gi|239756949 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 121

 Score =  247 bits (631), Expect = 1e-66
 Identities = 121/121 (100%), Positives = 121/121 (100%)

Query: 1   MLSVPDSRRKPSPHIGQETTSISKLRRKGEVAGGLTGLNSCHLPPIQKARPHPGQTHTSV 60
           MLSVPDSRRKPSPHIGQETTSISKLRRKGEVAGGLTGLNSCHLPPIQKARPHPGQTHTSV
Sbjct: 1   MLSVPDSRRKPSPHIGQETTSISKLRRKGEVAGGLTGLNSCHLPPIQKARPHPGQTHTSV 60

Query: 61  RLTGGPVLAGKLLAKRPRSPPSPNGERGSAASRSPTAAPQQRPRSPVGGRQELTEAAPLP 120
           RLTGGPVLAGKLLAKRPRSPPSPNGERGSAASRSPTAAPQQRPRSPVGGRQELTEAAPLP
Sbjct: 61  RLTGGPVLAGKLLAKRPRSPPSPNGERGSAASRSPTAAPQQRPRSPVGGRQELTEAAPLP 120

Query: 121 K 121
           K
Sbjct: 121 K 121


>gi|239751436 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 121

 Score =  243 bits (620), Expect = 2e-65
 Identities = 119/121 (98%), Positives = 119/121 (98%)

Query: 1   MLSVPDSRRKPSPHIGQETTSISKLRRKGEVAGGLTGLNSCHLPPIQKARPHPGQTHTSV 60
           MLSVPDSRRKPSPHIGQETTSISKLRRKGEVAGGLTGLNSCHLPPIQKARPHPGQTHTSV
Sbjct: 1   MLSVPDSRRKPSPHIGQETTSISKLRRKGEVAGGLTGLNSCHLPPIQKARPHPGQTHTSV 60

Query: 61  RLTGGPVLAGKLLAKRPRSPPSPNGERGSAASRSPTAAPQQRPRSPVGGRQELTEAAPLP 120
            LTGGPVLAGKLLAKRPRSPPSPNGERGSA SRSPTAAPQQRPRSPVGGRQELTEAAPLP
Sbjct: 61  SLTGGPVLAGKLLAKRPRSPPSPNGERGSAESRSPTAAPQQRPRSPVGGRQELTEAAPLP 120

Query: 121 K 121
           K
Sbjct: 121 K 121


>gi|239745941 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 121

 Score =  240 bits (612), Expect = 2e-64
 Identities = 118/121 (97%), Positives = 118/121 (97%)

Query: 1   MLSVPDSRRKPSPHIGQETTSISKLRRKGEVAGGLTGLNSCHLPPIQKARPHPGQTHTSV 60
           MLSVPDSRRKPSPHIGQETTSISKLRRKGEVAGGLTGLNSCHLPPIQKARPHPGQT TSV
Sbjct: 1   MLSVPDSRRKPSPHIGQETTSISKLRRKGEVAGGLTGLNSCHLPPIQKARPHPGQTRTSV 60

Query: 61  RLTGGPVLAGKLLAKRPRSPPSPNGERGSAASRSPTAAPQQRPRSPVGGRQELTEAAPLP 120
            LTGGPVLAGKLLAKRPRSPPSPNGERGSA SRSPTAAPQQRPRSPVGGRQELTEAAPLP
Sbjct: 61  SLTGGPVLAGKLLAKRPRSPPSPNGERGSAESRSPTAAPQQRPRSPVGGRQELTEAAPLP 120

Query: 121 K 121
           K
Sbjct: 121 K 121


>gi|19924099 synapsin I isoform Ia [Homo sapiens]
          Length = 705

 Score = 38.1 bits (87), Expect = 0.002
 Identities = 29/98 (29%), Positives = 41/98 (41%), Gaps = 23/98 (23%)

Query: 44  PPIQKARPHPGQTHTSVRLTGGPVLAGKLLAKRPRSPPSPNGERG--------SAASRSP 95
           P  Q A P  GQ   S  + GGP   G   A RP + PSP  + G        S +  +P
Sbjct: 518 PASQAAPPTQGQGRQSRPVAGGP---GAPPAARPPASPSPQRQAGPPQATRQTSVSGPAP 574

Query: 96  TAA------------PQQRPRSPVGGRQELTEAAPLPK 121
             A            P Q+P  P G  ++ ++A P+P+
Sbjct: 575 PKASGAPPGGQQRQGPPQKPPGPAGPTRQASQAGPVPR 612



 Score = 30.8 bits (68), Expect = 0.25
 Identities = 27/77 (35%), Positives = 33/77 (42%), Gaps = 6/77 (7%)

Query: 44  PPIQKARPHPGQTHTSVRLTGGPVLAGKLLAKRPRSPPSPNGERGSAASRSPTAAPQQRP 103
           PP+Q+  P  GQ H    L+G    AG  L +R  SP S   +  S A  +P    Q R 
Sbjct: 479 PPLQQRPPPQGQQH----LSGLGPPAGSPLPQRLPSPTSAPQQPASQA--APPTQGQGRQ 532

Query: 104 RSPVGGRQELTEAAPLP 120
             PV G      AA  P
Sbjct: 533 SRPVAGGPGAPPAARPP 549



 Score = 25.8 bits (55), Expect = 8.2
 Identities = 15/46 (32%), Positives = 20/46 (43%), Gaps = 3/46 (6%)

Query: 75  KRPRSPPSPNGERGSAASRSPTAAPQQRPRSPVGGRQELTEAAPLP 120
           +RP+ PP P G     A+  P  A  +R     G     + AAP P
Sbjct: 26  QRPQPPPPPPGAHSPGATPGPGTATAERSS---GVAPAASPAAPSP 68


>gi|19924097 synapsin I isoform Ib [Homo sapiens]
          Length = 669

 Score = 38.1 bits (87), Expect = 0.002
 Identities = 29/98 (29%), Positives = 41/98 (41%), Gaps = 23/98 (23%)

Query: 44  PPIQKARPHPGQTHTSVRLTGGPVLAGKLLAKRPRSPPSPNGERG--------SAASRSP 95
           P  Q A P  GQ   S  + GGP   G   A RP + PSP  + G        S +  +P
Sbjct: 518 PASQAAPPTQGQGRQSRPVAGGP---GAPPAARPPASPSPQRQAGPPQATRQTSVSGPAP 574

Query: 96  TAA------------PQQRPRSPVGGRQELTEAAPLPK 121
             A            P Q+P  P G  ++ ++A P+P+
Sbjct: 575 PKASGAPPGGQQRQGPPQKPPGPAGPTRQASQAGPVPR 612



 Score = 30.8 bits (68), Expect = 0.25
 Identities = 27/77 (35%), Positives = 33/77 (42%), Gaps = 6/77 (7%)

Query: 44  PPIQKARPHPGQTHTSVRLTGGPVLAGKLLAKRPRSPPSPNGERGSAASRSPTAAPQQRP 103
           PP+Q+  P  GQ H    L+G    AG  L +R  SP S   +  S A  +P    Q R 
Sbjct: 479 PPLQQRPPPQGQQH----LSGLGPPAGSPLPQRLPSPTSAPQQPASQA--APPTQGQGRQ 532

Query: 104 RSPVGGRQELTEAAPLP 120
             PV G      AA  P
Sbjct: 533 SRPVAGGPGAPPAARPP 549



 Score = 25.8 bits (55), Expect = 8.2
 Identities = 15/46 (32%), Positives = 20/46 (43%), Gaps = 3/46 (6%)

Query: 75  KRPRSPPSPNGERGSAASRSPTAAPQQRPRSPVGGRQELTEAAPLP 120
           +RP+ PP P G     A+  P  A  +R     G     + AAP P
Sbjct: 26  QRPQPPPPPPGAHSPGATPGPGTATAERSS---GVAPAASPAAPSP 68


>gi|194578898 hypothetical protein LOC100170841 [Homo sapiens]
          Length = 379

 Score = 36.6 bits (83), Expect = 0.005
 Identities = 32/103 (31%), Positives = 41/103 (39%), Gaps = 18/103 (17%)

Query: 11  PSPHIGQETTSISKLRRKGEVAGG----LTGLNSCHLPPIQKARPHPGQTHTSVRLTGGP 66
           P+   G++    +  RR  E  GG      G+ SC  P    A PHP ++ TS       
Sbjct: 100 PNTAAGEDADVAACPRRGEEEEGGGGFPHFGVRSCAPPGRCPAPPHPRESTTS------- 152

Query: 67  VLAGKLLAKRPRSPPSPNGERGSAASRSPTAAPQQRPRSPVGG 109
                  +  PR  P    +RG AAS  P   P  RP SP  G
Sbjct: 153 -----FASAPPRPAPGLEPQRGPAAS--PPQEPSSRPPSPPAG 188


>gi|169163728 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 237

 Score = 35.8 bits (81), Expect = 0.008
 Identities = 35/117 (29%), Positives = 46/117 (39%), Gaps = 17/117 (14%)

Query: 9   RKPSPHIGQETTSISKLRRKGEVAGGLTGLNSCHLPPIQKARPHPGQTHTSVRLTGGPVL 68
           R PSP        + + RR+G     L G  +    P   AR  P + +   R    P  
Sbjct: 35  RPPSP--------VGRARRRGTWLRVLRGPRAPSPAPALPARARPPREN---RKRAVPAR 83

Query: 69  AGKLLAKRPRSPPSPNGERGSAASRSPTAAPQQ------RPRSPVGGRQELTEAAPL 119
           A +   KRP    +   E  S   RS    P++      RPR   G R+ L EAAPL
Sbjct: 84  AARGPPKRPAGGQTGGVEAASGEERSQPRRPRRPPPAPRRPRPAPGRRKSLYEAAPL 140


>gi|169163708 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 237

 Score = 35.8 bits (81), Expect = 0.008
 Identities = 35/117 (29%), Positives = 46/117 (39%), Gaps = 17/117 (14%)

Query: 9   RKPSPHIGQETTSISKLRRKGEVAGGLTGLNSCHLPPIQKARPHPGQTHTSVRLTGGPVL 68
           R PSP        + + RR+G     L G  +    P   AR  P + +   R    P  
Sbjct: 35  RPPSP--------VGRARRRGTWLRVLRGPRAPSPAPALPARARPPREN---RKRAVPAR 83

Query: 69  AGKLLAKRPRSPPSPNGERGSAASRSPTAAPQQ------RPRSPVGGRQELTEAAPL 119
           A +   KRP    +   E  S   RS    P++      RPR   G R+ L EAAPL
Sbjct: 84  AARGPPKRPAGGQTGGVEAASGEERSQPRRPRRPPPAPRRPRPAPGRRKSLYEAAPL 140


>gi|169163019 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 237

 Score = 35.8 bits (81), Expect = 0.008
 Identities = 35/117 (29%), Positives = 46/117 (39%), Gaps = 17/117 (14%)

Query: 9   RKPSPHIGQETTSISKLRRKGEVAGGLTGLNSCHLPPIQKARPHPGQTHTSVRLTGGPVL 68
           R PSP        + + RR+G     L G  +    P   AR  P + +   R    P  
Sbjct: 35  RPPSP--------VGRARRRGTWLRVLRGPRAPSPAPALPARARPPREN---RKRAVPAR 83

Query: 69  AGKLLAKRPRSPPSPNGERGSAASRSPTAAPQQ------RPRSPVGGRQELTEAAPL 119
           A +   KRP    +   E  S   RS    P++      RPR   G R+ L EAAPL
Sbjct: 84  AARGPPKRPAGGQTGGVEAASGEERSQPRRPRRPPPAPRRPRPAPGRRKSLYEAAPL 140


>gi|219804203 rabphilin 3A homolog isoform 1 [Homo sapiens]
          Length = 694

 Score = 35.0 bits (79), Expect = 0.013
 Identities = 33/113 (29%), Positives = 41/113 (36%), Gaps = 12/113 (10%)

Query: 16  GQETTSISKLRRKGEVAGGLTGLNSCHLPPIQKARPHPGQTHTSVRLTGGPVLAGKLLAK 75
           G  + S + LRR   V        S   P    A P PGQ  T      GP  AG+   +
Sbjct: 258 GDSSRSPAGLRRANSVQASRPAPGSVQSP----APPQPGQPGTPGGSRPGPGPAGRFPDQ 313

Query: 76  RPRSPPS-------PNGER-GSAASRSPTAAPQQRPRSPVGGRQELTEAAPLP 120
           +P   PS       P  ER G         A + R   P G   + + AAP P
Sbjct: 314 KPEVAPSDPGTTAPPREERTGGVGGYPAVGAREDRMSHPSGPYSQASAAAPQP 366


>gi|45267837 rabphilin 3A homolog isoform 2 [Homo sapiens]
          Length = 690

 Score = 35.0 bits (79), Expect = 0.013
 Identities = 33/113 (29%), Positives = 41/113 (36%), Gaps = 12/113 (10%)

Query: 16  GQETTSISKLRRKGEVAGGLTGLNSCHLPPIQKARPHPGQTHTSVRLTGGPVLAGKLLAK 75
           G  + S + LRR   V        S   P    A P PGQ  T      GP  AG+   +
Sbjct: 254 GDSSRSPAGLRRANSVQASRPAPGSVQSP----APPQPGQPGTPGGSRPGPGPAGRFPDQ 309

Query: 76  RPRSPPS-------PNGER-GSAASRSPTAAPQQRPRSPVGGRQELTEAAPLP 120
           +P   PS       P  ER G         A + R   P G   + + AAP P
Sbjct: 310 KPEVAPSDPGTTAPPREERTGGVGGYPAVGAREDRMSHPSGPYSQASAAAPQP 362


>gi|82546872 DNA helicase homolog PIF1 [Homo sapiens]
          Length = 641

 Score = 33.9 bits (76), Expect = 0.030
 Identities = 26/64 (40%), Positives = 30/64 (46%), Gaps = 8/64 (12%)

Query: 65  GPVLA-GKLLAKRPR-----SPPSPNGERGSAASRSPTAAPQQRPRSPVGGRQELTEAA- 117
           GP  A  +LL  RPR     SP  P   R  AA+R P     +RP  P  G +  TEA  
Sbjct: 131 GPASARAQLLGPRPRDFVTISPVQPEERRLRAATRVPDTTLVKRPVEPQAGAEPSTEAPR 190

Query: 118 -PLP 120
            PLP
Sbjct: 191 WPLP 194


>gi|148596988 mucoepidermoid carcinoma translocated 1 isoform 3
           [Homo sapiens]
          Length = 650

 Score = 33.5 bits (75), Expect = 0.039
 Identities = 21/64 (32%), Positives = 28/64 (43%), Gaps = 9/64 (14%)

Query: 44  PPIQKARPHPGQTHTSVRL-TGGPVLAGKLLAKRPRSPPSPNGERGSAASRSPTAAPQQR 102
           PP  +  P P      VRL  GGP+L    L + P+ PP         A   P++ PQ  
Sbjct: 390 PPASQQPPPPPPPQAPVRLPPGGPLLPSASLTRGPQPPP--------LAVTVPSSLPQSP 441

Query: 103 PRSP 106
           P +P
Sbjct: 442 PENP 445


>gi|148596965 mucoepidermoid carcinoma translocated 1 isoform 1
           [Homo sapiens]
          Length = 634

 Score = 33.5 bits (75), Expect = 0.039
 Identities = 21/64 (32%), Positives = 28/64 (43%), Gaps = 9/64 (14%)

Query: 44  PPIQKARPHPGQTHTSVRL-TGGPVLAGKLLAKRPRSPPSPNGERGSAASRSPTAAPQQR 102
           PP  +  P P      VRL  GGP+L    L + P+ PP         A   P++ PQ  
Sbjct: 374 PPASQQPPPPPPPQAPVRLPPGGPLLPSASLTRGPQPPP--------LAVTVPSSLPQSP 425

Query: 103 PRSP 106
           P +P
Sbjct: 426 PENP 429


>gi|41349482 proline-rich protein BstNI subfamily 1 isoform 1
           preproprotein [Homo sapiens]
          Length = 331

 Score = 33.5 bits (75), Expect = 0.039
 Identities = 22/64 (34%), Positives = 24/64 (37%), Gaps = 10/64 (15%)

Query: 47  QKARPHPGQTHTSVRLTGGPVLAGKLLAKRPRSPPSPNGERGSAASRSPTAAPQQRPRSP 106
           Q AR  PG+        G P   G      P+ PP P G         P   PQ  PR P
Sbjct: 272 QSARSPPGKPQ------GPPQQEGN----NPQGPPPPAGGNPQQPQAPPAGQPQGPPRPP 321

Query: 107 VGGR 110
            GGR
Sbjct: 322 QGGR 325



 Score = 30.0 bits (66), Expect = 0.43
 Identities = 24/75 (32%), Positives = 30/75 (40%), Gaps = 13/75 (17%)

Query: 44  PPIQKARPHPGQTHTSVRLTGGPVLAGKLLAKRPRSPPSPNGERG-------SAASRSPT 96
           PP Q      G      +  G P   GK    +P+ PP P   +G       S +S+SP 
Sbjct: 161 PPPQGGNQPQGPPPPPGKPQGPPPQGGK----KPQGPPPPGKPQGPPPQGDKSRSSQSPP 216

Query: 97  AAPQQRPRSPVGGRQ 111
             PQ  P  P GG Q
Sbjct: 217 GKPQGPP--PQGGNQ 229



 Score = 28.9 bits (63), Expect = 0.97
 Identities = 24/75 (32%), Positives = 28/75 (37%), Gaps = 13/75 (17%)

Query: 44  PPIQKARPHPGQTHTSVRLTGGPVLAGKLLAKRPRSPPSPNGERG-------SAASRSPT 96
           PP Q      G      +  G P   G     RP+ PP P   +G       S + RSP 
Sbjct: 100 PPPQGGNQPQGPPPPPGKPQGPPPQGGN----RPQGPPPPGKPQGPPPQGDKSRSPRSPP 155

Query: 97  AAPQQRPRSPVGGRQ 111
             PQ  P  P GG Q
Sbjct: 156 GKPQGPP--PQGGNQ 168



 Score = 26.6 bits (57), Expect = 4.8
 Identities = 16/43 (37%), Positives = 20/43 (46%), Gaps = 9/43 (20%)

Query: 76  RPRSPPSPNGERG-------SAASRSPTAAPQQRPRSPVGGRQ 111
           +P+ PP P   +G       S + RSP   PQ  P  P GG Q
Sbjct: 67  KPQGPPPPGKPQGPPPQGDKSRSPRSPPGKPQGPP--PQGGNQ 107


>gi|41349486 proline-rich protein BstNI subfamily 1 isoform 3
           preproprotein [Homo sapiens]
          Length = 178

 Score = 33.5 bits (75), Expect = 0.039
 Identities = 22/64 (34%), Positives = 24/64 (37%), Gaps = 10/64 (15%)

Query: 47  QKARPHPGQTHTSVRLTGGPVLAGKLLAKRPRSPPSPNGERGSAASRSPTAAPQQRPRSP 106
           Q AR  PG+        G P   G      P+ PP P G         P   PQ  PR P
Sbjct: 119 QSARSPPGKPQ------GPPQQEGN----NPQGPPPPAGGNPQQPQAPPAGQPQGPPRPP 168

Query: 107 VGGR 110
            GGR
Sbjct: 169 QGGR 172



 Score = 25.8 bits (55), Expect = 8.2
 Identities = 15/44 (34%), Positives = 21/44 (47%), Gaps = 9/44 (20%)

Query: 76  RPRSPPSPNGERG-------SAASRSPTAAPQQRPRSPVGGRQE 112
           +P+ PP P   +G       S + RSP   PQ  P  P GG+ +
Sbjct: 67  KPQGPPPPGKPQGPPPQGDKSRSPRSPPGKPQGPP--PQGGKPQ 108


>gi|41349484 proline-rich protein BstNI subfamily 1 isoform 2
           preproprotein [Homo sapiens]
          Length = 198

 Score = 33.5 bits (75), Expect = 0.039
 Identities = 22/64 (34%), Positives = 24/64 (37%), Gaps = 10/64 (15%)

Query: 47  QKARPHPGQTHTSVRLTGGPVLAGKLLAKRPRSPPSPNGERGSAASRSPTAAPQQRPRSP 106
           Q AR  PG+        G P   G      P+ PP P G         P   PQ  PR P
Sbjct: 139 QSARSPPGKPQ------GPPQQEGN----NPQGPPPPAGGNPQQPQAPPAGQPQGPPRPP 188

Query: 107 VGGR 110
            GGR
Sbjct: 189 QGGR 192



 Score = 25.8 bits (55), Expect = 8.2
 Identities = 15/44 (34%), Positives = 21/44 (47%), Gaps = 9/44 (20%)

Query: 76  RPRSPPSPNGERG-------SAASRSPTAAPQQRPRSPVGGRQE 112
           +P+ PP P   +G       S + RSP   PQ  P  P GG+ +
Sbjct: 67  KPQGPPPPGKPQGPPPQGDKSRSPRSPPGKPQGPP--PQGGKPQ 108


>gi|160707881 formin 2 [Homo sapiens]
          Length = 1722

 Score = 33.1 bits (74), Expect = 0.051
 Identities = 29/88 (32%), Positives = 34/88 (38%), Gaps = 3/88 (3%)

Query: 33  GGLTGLNSCHLPPIQKARPHPGQTHTSVRLTGGPVLAGKLLA--KRPRSPPSPNGERGSA 90
           G   GL+   L P   A   PG   T   L+    L   L A  + P+ PPSP G   S 
Sbjct: 244 GAFLGLDRFLLGPSGGAGEAPGSPDTEQALSALSDLPESLAAEPREPQQPPSPGGLPVSE 303

Query: 91  ASRSPTAAPQQRPRSPVGGRQELTEAAP 118
           A   P A P  +  SP        EA P
Sbjct: 304 APSLPAAQPAAKD-SPSSTAFPFPEAGP 330


>gi|189217919 protein associated with topoisomerase II homolog 1
           [Homo sapiens]
          Length = 770

 Score = 32.7 bits (73), Expect = 0.067
 Identities = 36/123 (29%), Positives = 47/123 (38%), Gaps = 14/123 (11%)

Query: 1   MLSVPDSRRKPSPHIGQETTSISKLRRKGEVAGGLTGLNSCHLPPIQKARPHPGQTHTSV 60
           + SVP+S     P        +S L+R  ++ GG           +Q  R  P Q     
Sbjct: 237 LCSVPNSSLLGHPFPPSVPPVLSPLQR-AQLLGGAQ---------LQPGRMSPSQFARVP 286

Query: 61  RLTGGPVLA--GKLLAKRPRS--PPSPNGERGSAASRSPTAAPQQRPRSPVGGRQELTEA 116
              G P+ A   KLL  R     PP+P      +A  S T  PQQ P  P    Q L   
Sbjct: 287 GFVGSPLAAMNPKLLQGRVGQMLPPAPGFRAFFSAPPSATPPPQQHPPGPGPHLQNLRSQ 346

Query: 117 APL 119
           AP+
Sbjct: 347 APM 349


>gi|163965366 nascent polypeptide-associated complex alpha subunit
            isoform a [Homo sapiens]
          Length = 2078

 Score = 32.7 bits (73), Expect = 0.067
 Identities = 29/123 (23%), Positives = 44/123 (35%), Gaps = 8/123 (6%)

Query: 1    MLSVPDSRRKPSPHIGQETTSISKLRRKGEVAGGLTGLNSCHLPPIQKARPHPGQTHTSV 60
            ++++P  +  P+    ++  ++S      + A            P  K  P P    T  
Sbjct: 890  VVNLPFPKEGPATPAPKQAPALSMTSSSPKKARATPAPKGIPASPSPKGAPTPPAA-TPP 948

Query: 61   RLTGGPVLAGKLLAKRP--RSPPSPNGERGSAASRSPTAAPQQRPRSPVGGRQELTEAAP 118
               GGP       A  P   +PPSP G   + + +     P   P SP GG      A P
Sbjct: 949  SPKGGPATPSPKWAPTPPAATPPSPKGGPATPSPKGAPTPPAATPPSPKGG-----PATP 1003

Query: 119  LPK 121
             PK
Sbjct: 1004 SPK 1006



 Score = 32.3 bits (72), Expect = 0.087
 Identities = 33/121 (27%), Positives = 42/121 (34%), Gaps = 9/121 (7%)

Query: 3    SVPDSRRKPSPHIGQETTSISKLRRKGEVAGGLTGLNSCHLPPIQKARPHPGQTHTSVRL 62
            S P +   PSP      T + K       A   +       P ++ A   P  T  S + 
Sbjct: 1033 STPPAATPPSPKGSPAATPLPKGAPTTPAATLPSPKGGPATPSLKGAPTPPAATPPSPK- 1091

Query: 63   TGGPVLAGKLLAKRP--RSPPSPNGERGSAASRSPTAAPQQRPRSPVGGRQELTEAAPLP 120
             GGP       A  P   +PPSP G   +   +     P   P SP GG      A P P
Sbjct: 1092 -GGPATPSPKGAPMPPAATPPSPKGGLATPPHKGAPTTPAATPPSPKGGL-----ATPPP 1145

Query: 121  K 121
            K
Sbjct: 1146 K 1146



 Score = 30.4 bits (67), Expect = 0.33
 Identities = 21/66 (31%), Positives = 26/66 (39%), Gaps = 3/66 (4%)

Query: 45   PIQKARPHPGQTHTSVRLTGGPVLAGKLLAKRP--RSPPSPNGERGSAASRSPTAAPQQR 102
            P  K  P+P    T     GGP  +    A  P   +PPSP G  G+   +     P   
Sbjct: 1281 PPHKGAPNPAVV-TPPSPKGGPATSPPKGAPTPPAATPPSPKGSPGTPPPKGAPTPPAVT 1339

Query: 103  PRSPVG 108
            P SP G
Sbjct: 1340 PPSPKG 1345



 Score = 29.6 bits (65), Expect = 0.57
 Identities = 30/108 (27%), Positives = 38/108 (35%), Gaps = 5/108 (4%)

Query: 5    PDSRRKPSPHIGQETTSISKLRRKGEVAGGLTGLNSCHLPPIQKARPH-PGQTHTSVRLT 63
            P +   PSP      T   K       A   +   S    P+ K  P  P  T  S +  
Sbjct: 1011 PPAVTPPSPKGSPAATPFPKGASTPPAATPPSPKGSPAATPLPKGAPTTPAATLPSPK-- 1068

Query: 64   GGPVLAGKLLAKRP--RSPPSPNGERGSAASRSPTAAPQQRPRSPVGG 109
            GGP       A  P   +PPSP G   + + +     P   P SP GG
Sbjct: 1069 GGPATPSLKGAPTPPAATPPSPKGGPATPSPKGAPMPPAATPPSPKGG 1116



 Score = 28.5 bits (62), Expect = 1.3
 Identities = 27/88 (30%), Positives = 31/88 (35%), Gaps = 14/88 (15%)

Query: 44   PPIQK---ARPHPGQTHTSVRLT-----GGPVLAGKLLAKRP--RSPPSPNGERGSAASR 93
            PP  K   A P P    T    T     GGP       A  P   +PPSP G   + + +
Sbjct: 947  PPSPKGGPATPSPKWAPTPPAATPPSPKGGPATPSPKGAPTPPAATPPSPKGGPATPSPK 1006

Query: 94   SPTAAPQQRPRSPVGGRQELTEAAPLPK 121
                 P   P SP G       A P PK
Sbjct: 1007 GAPTPPAVTPPSPKGS----PAATPFPK 1030



 Score = 28.5 bits (62), Expect = 1.3
 Identities = 27/89 (30%), Positives = 33/89 (37%), Gaps = 17/89 (19%)

Query: 44   PPIQK---ARPHPGQTHTSVRLTGGPVLAGKLLAKRPR--------SPPSPNGERGSAAS 92
            PP  K   A P P    T+   T  P   G L    P+        +PPSP G   + + 
Sbjct: 1179 PPSPKGGLATPSPKGAPTTPAATP-PSPKGGLATPSPKGAPTTPAATPPSPKGGLATPSP 1237

Query: 93   RSPTAAPQQRPRSPVGGRQELTEAAPLPK 121
            +     P   P SP GG      A P PK
Sbjct: 1238 KGAPTTPAATPPSPKGG-----PATPPPK 1261



 Score = 28.1 bits (61), Expect = 1.6
 Identities = 23/79 (29%), Positives = 27/79 (34%), Gaps = 15/79 (18%)

Query: 51   PHPGQTHTSVRLTGGPVLAGKLLAKRPR--------SPPSPNGERGSAASRSPTAAPQQR 102
            PH G   T       P   G L    P+        +PPSP G   +   +     P   
Sbjct: 1121 PHKGAPTTPAATPPSP--KGGLATPPPKGAPTTPAATPPSPKGGLATPPPKGAPTTPAAT 1178

Query: 103  PRSPVGGRQELTEAAPLPK 121
            P SP GG      A P PK
Sbjct: 1179 PPSPKGGL-----ATPSPK 1192



 Score = 28.1 bits (61), Expect = 1.6
 Identities = 15/43 (34%), Positives = 19/43 (44%), Gaps = 5/43 (11%)

Query: 79   SPPSPNGERGSAASRSPTAAPQQRPRSPVGGRQELTEAAPLPK 121
            +PPSP G   + + +     P   P SP GG      A P PK
Sbjct: 1178 TPPSPKGGLATPSPKGAPTTPAATPPSPKGGL-----ATPSPK 1215


>gi|23200002 NOL1/NOP2/Sun domain family, member 5C isoform 2 [Homo
           sapiens]
          Length = 291

 Score = 32.7 bits (73), Expect = 0.067
 Identities = 29/107 (27%), Positives = 46/107 (42%), Gaps = 15/107 (14%)

Query: 11  PSPHIGQETTSISKLRRKGEVAGGLT-GLNSCHLPPIQKARPH------PGQTHT----- 58
           PSP +     S+ +   +  V   L     +  L P   ARPH      PG  H      
Sbjct: 142 PSPRLVYSMCSLCQEENEDMVQDALQQNPGAFRLAPALPARPHRGLSTFPGAEHCLRASP 201

Query: 59  SVRLTGGPVLAGKLLAKRPRSPPSPNGERGSAASRSPTAAPQQRPRS 105
              L+GG  +A   + +R   P S +  + SA  R+P+ AP+++ R+
Sbjct: 202 KTTLSGGFFVA---VIERVEMPTSASQAKASAPERTPSPAPKRKKRA 245


>gi|4557853 transcription factor SOX9 [Homo sapiens]
          Length = 509

 Score = 32.3 bits (72), Expect = 0.087
 Identities = 26/81 (32%), Positives = 34/81 (41%), Gaps = 20/81 (24%)

Query: 42  HLPPIQKARPHPG--QTHTSVRLTGG---------PVLAGKLLAKRPRSPPSPNGERGSA 90
           +LPP      HPG   TH  V  TG          P  AG +   + ++PP P  +   A
Sbjct: 297 YLPP----NGHPGVPATHGQVTYTGSYGISSTAATPASAGHVWMSKQQAPPPPPQQPPQA 352

Query: 91  -----ASRSPTAAPQQRPRSP 106
                A   P AAP Q+P +P
Sbjct: 353 PPAPQAPPQPQAAPPQQPAAP 373


>gi|47778921 alpha 1 type XIX collagen precursor [Homo sapiens]
          Length = 1142

 Score = 32.3 bits (72), Expect = 0.087
 Identities = 27/92 (29%), Positives = 32/92 (34%), Gaps = 3/92 (3%)

Query: 18  ETTSISKLRRKGEVA-GGLTGLNSCHLPPIQKARPHPGQTHTSVRLTGGPVLAGKLLAKR 76
           ET    +   KG+ A  GL G N           P P          G P L G L  + 
Sbjct: 338 ETGEKGEQGEKGDPALAGLNGENGLKGDLGPHGPPGPKGEKGDTGPPGPPALPGSLGIQG 397

Query: 77  PRSPPSPNGERGSAASRSPTAAPQQRPRSPVG 108
           P+ PP   G+RG      P   P   P  P G
Sbjct: 398 PQGPPGKEGQRGRRGKTGPPGKP--GPPGPPG 427



 Score = 26.2 bits (56), Expect = 6.3
 Identities = 13/36 (36%), Positives = 15/36 (41%)

Query: 64   GGPVLAGKLLAKRPRSPPSPNGERGSAASRSPTAAP 99
            G P L G   A  P  PP   G  GS   + P  +P
Sbjct: 968  GKPGLTGMKGAIGPMGPPGNKGSMGSPGHQGPPGSP 1003


>gi|209571537 proline-rich protein BstNI subfamily 2 [Homo sapiens]
          Length = 416

 Score = 32.3 bits (72), Expect = 0.087
 Identities = 26/68 (38%), Positives = 31/68 (45%), Gaps = 11/68 (16%)

Query: 44  PPIQKARPHPGQTHTSVRLTGGPVLAGKLLAKRPRSPPSPNGERGSAASRSPTAAPQQRP 103
           PP  K +  P Q     +   GP   GK     P+ PP P G+  S +SRSP   PQ  P
Sbjct: 134 PPPGKPQGPPPQGGNKPQ---GPPPPGK-----PQGPP-PQGDNKSRSSRSPPGKPQGPP 184

Query: 104 RSPVGGRQ 111
             P GG Q
Sbjct: 185 --PQGGNQ 190



 Score = 32.3 bits (72), Expect = 0.087
 Identities = 23/70 (32%), Positives = 26/70 (37%), Gaps = 3/70 (4%)

Query: 44  PPIQKARPHP--GQTHTSVRLTGG-PVLAGKLLAKRPRSPPSPNGERGSAASRSPTAAPQ 100
           PP +   P P  G    S R   G P    +     P+ PP P G         P   PQ
Sbjct: 341 PPGKPQGPPPQGGSKSRSARSPPGKPQGPPQQEGNNPQGPPPPAGGNPQQPQAPPAGQPQ 400

Query: 101 QRPRSPVGGR 110
             PR P GGR
Sbjct: 401 GPPRPPQGGR 410



 Score = 31.2 bits (69), Expect = 0.19
 Identities = 25/68 (36%), Positives = 31/68 (45%), Gaps = 11/68 (16%)

Query: 44  PPIQKARPHPGQTHTSVRLTGGPVLAGKLLAKRPRSPPSPNGERGSAASRSPTAAPQQRP 103
           PP  K +  P Q     +   GP   GK     P+ PP P G+  S ++RSP   PQ  P
Sbjct: 196 PPPGKPQGPPPQGGNKPQ---GPPPPGK-----PQGPP-PQGDNKSQSARSPPGKPQGPP 246

Query: 104 RSPVGGRQ 111
             P GG Q
Sbjct: 247 --PQGGNQ 252



 Score = 30.4 bits (67), Expect = 0.33
 Identities = 26/68 (38%), Positives = 30/68 (44%), Gaps = 11/68 (16%)

Query: 44  PPIQKARPHPGQTHTSVRLTGGPVLAGKLLAKRPRSPPSPNGERGSAASRSPTAAPQQRP 103
           PP  K +  P Q     +   GP   GK     P+ PP P G   S +SRSP   PQ  P
Sbjct: 258 PPPGKPQGPPPQGGNKPQ---GPPPPGK-----PQGPP-PQGGSKSRSSRSPPGKPQGPP 308

Query: 104 RSPVGGRQ 111
             P GG Q
Sbjct: 309 --PQGGNQ 314



 Score = 27.7 bits (60), Expect = 2.2
 Identities = 23/75 (30%), Positives = 28/75 (37%), Gaps = 13/75 (17%)

Query: 44  PPIQKARPHPGQTHTSVRLTGGPVLAGKLLAKRPRSPPSPNGERG-------SAASRSPT 96
           PP Q      G      +  G P   G     +P+ PP P   +G       S + RSP 
Sbjct: 60  PPPQGGNQPQGPPPPPGKPQGPPPQGGN----KPQGPPPPGKPQGPPPQGDKSRSPRSPP 115

Query: 97  AAPQQRPRSPVGGRQ 111
             PQ  P  P GG Q
Sbjct: 116 GKPQGPP--PQGGNQ 128


>gi|111118972 collagen, type XI, alpha 2 isoform 2 preproprotein
           [Homo sapiens]
          Length = 1650

 Score = 32.0 bits (71), Expect = 0.11
 Identities = 19/50 (38%), Positives = 22/50 (44%), Gaps = 1/50 (2%)

Query: 64  GGPVLAGKLLAKRPRSPPSPNGERGSAASRSPTAAP-QQRPRSPVGGRQE 112
           GGP L G      P  P    GERG+A S  P   P +  P+ P G   E
Sbjct: 911 GGPGLKGNEGPSGPPGPAGSPGERGAAGSGGPIGPPGRPGPQGPPGAAGE 960


>gi|111118968 collagen, type XI, alpha 2 isoform 3 preproprotein
           [Homo sapiens]
          Length = 1629

 Score = 32.0 bits (71), Expect = 0.11
 Identities = 19/50 (38%), Positives = 22/50 (44%), Gaps = 1/50 (2%)

Query: 64  GGPVLAGKLLAKRPRSPPSPNGERGSAASRSPTAAP-QQRPRSPVGGRQE 112
           GGP L G      P  P    GERG+A S  P   P +  P+ P G   E
Sbjct: 890 GGPGLKGNEGPSGPPGPAGSPGERGAAGSGGPIGPPGRPGPQGPPGAAGE 939


>gi|111118970 collagen, type XI, alpha 2 isoform 1 preproprotein [Homo
            sapiens]
          Length = 1736

 Score = 32.0 bits (71), Expect = 0.11
 Identities = 19/50 (38%), Positives = 22/50 (44%), Gaps = 1/50 (2%)

Query: 64   GGPVLAGKLLAKRPRSPPSPNGERGSAASRSPTAAP-QQRPRSPVGGRQE 112
            GGP L G      P  P    GERG+A S  P   P +  P+ P G   E
Sbjct: 997  GGPGLKGNEGPSGPPGPAGSPGERGAAGSGGPIGPPGRPGPQGPPGAAGE 1046


>gi|32140760 collagen, type XXVII, alpha 1 [Homo sapiens]
          Length = 1860

 Score = 32.0 bits (71), Expect = 0.11
 Identities = 17/43 (39%), Positives = 21/43 (48%), Gaps = 1/43 (2%)

Query: 64   GGPVLAGKLLAKRPRSPPSPNGERGSAASRSPTAAPQQRPRSP 106
            G P + G    + PR P  P GE+GS   + P   PQ RP  P
Sbjct: 1054 GPPGMRGAKGRRGPRGPDGPAGEQGSRGLKGP-PGPQGRPGRP 1095



 Score = 28.9 bits (63), Expect = 0.97
 Identities = 15/41 (36%), Positives = 17/41 (41%), Gaps = 2/41 (4%)

Query: 77   PRSPPSPNGERGSAASRSPTAAPQQRP--RSPVGGRQELTE 115
            P  PP P GE+G          P   P  R PVG R +  E
Sbjct: 1319 PLGPPGPKGEKGEQGEDGKAEGPPGPPGDRGPVGDRGDRGE 1359



 Score = 26.2 bits (56), Expect = 6.3
 Identities = 28/96 (29%), Positives = 35/96 (36%), Gaps = 21/96 (21%)

Query: 34   GLTGLNSCHLPP-------IQKARPHPGQTHTSVRLTGGPVLAGKLLAKRPRSPPSPNGE 86
            G+ GL     PP       IQ  R  PG       L G   + G L    P   P P G+
Sbjct: 1538 GMAGLFGPKGPPGDIGFKGIQGPRGPPG-------LMGKEGIVGPLGILGPSGLPGPKGD 1590

Query: 87   RGSAAS---RSPTAAPQQR----PRSPVGGRQELTE 115
            +GS      + P   P  R    P  P GG  +L +
Sbjct: 1591 KGSRGDWGLQGPRGPPGPRGRPGPPGPPGGPIQLQQ 1626


>gi|156071472 CD2 molecule [Homo sapiens]
          Length = 351

 Score = 31.6 bits (70), Expect = 0.15
 Identities = 17/49 (34%), Positives = 22/49 (44%), Gaps = 7/49 (14%)

Query: 80  PPSPNGERGSAASRSPTAA-------PQQRPRSPVGGRQELTEAAPLPK 121
           PP P G R  A S  P          PQ+RP +P G +    +  PLP+
Sbjct: 282 PPPPPGHRSQAPSHRPPPPGHRVQHQPQKRPPAPSGTQVHQQKGPPLPR 330



 Score = 28.9 bits (63), Expect = 0.97
 Identities = 17/68 (25%), Positives = 28/68 (41%), Gaps = 1/68 (1%)

Query: 45  PIQKARPHPGQTHTSVRLTGGPVLAGKLLAKRPRS-PPSPNGERGSAASRSPTAAPQQRP 103
           P     P P   H S   +  P   G  +  +P+  PP+P+G +       P   P+ +P
Sbjct: 276 PATSQHPPPPPGHRSQAPSHRPPPPGHRVQHQPQKRPPAPSGTQVHQQKGPPLPRPRVQP 335

Query: 104 RSPVGGRQ 111
           + P G  +
Sbjct: 336 KPPHGAAE 343


>gi|169206080 PREDICTED: hypothetical protein LOC100132234 [Homo
           sapiens]
          Length = 202

 Score = 31.6 bits (70), Expect = 0.15
 Identities = 22/65 (33%), Positives = 28/65 (43%), Gaps = 7/65 (10%)

Query: 61  RLTGGPVLAGKLLAKRPRSPP-SPNGERG------SAASRSPTAAPQQRPRSPVGGRQEL 113
           RL   P  +   LA+RP  PP  P G  G      +AA  +P   P  RP S +  R + 
Sbjct: 89  RLPPRPTRSPAPLARRPGKPPRRPKGAAGHPSAPPAAAPAAPAQPPAPRPESQLSDRPQS 148

Query: 114 TEAAP 118
            E  P
Sbjct: 149 WEQKP 153


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.310    0.130    0.383 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,256,304
Number of Sequences: 37866
Number of extensions: 361798
Number of successful extensions: 3194
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 147
Number of HSP's successfully gapped in prelim test: 266
Number of HSP's that attempted gapping in prelim test: 2500
Number of HSP's gapped (non-prelim): 930
length of query: 121
length of database: 18,247,518
effective HSP length: 89
effective length of query: 32
effective length of database: 14,877,444
effective search space: 476078208
effective search space used: 476078208
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 55 (25.8 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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