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Search of human proteins with 239756949
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239756949 PREDICTED: hypothetical protein [Homo sapiens]
(121 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239756949 PREDICTED: hypothetical protein [Homo sapiens] 247 1e-66
gi|239751436 PREDICTED: hypothetical protein [Homo sapiens] 243 2e-65
gi|239745941 PREDICTED: hypothetical protein [Homo sapiens] 240 2e-64
gi|19924099 synapsin I isoform Ia [Homo sapiens] 38 0.002
gi|19924097 synapsin I isoform Ib [Homo sapiens] 38 0.002
gi|194578898 hypothetical protein LOC100170841 [Homo sapiens] 37 0.005
gi|169163728 PREDICTED: hypothetical protein [Homo sapiens] 36 0.008
gi|169163708 PREDICTED: hypothetical protein [Homo sapiens] 36 0.008
gi|169163019 PREDICTED: hypothetical protein [Homo sapiens] 36 0.008
gi|219804203 rabphilin 3A homolog isoform 1 [Homo sapiens] 35 0.013
gi|45267837 rabphilin 3A homolog isoform 2 [Homo sapiens] 35 0.013
gi|82546872 DNA helicase homolog PIF1 [Homo sapiens] 34 0.030
gi|148596988 mucoepidermoid carcinoma translocated 1 isoform 3 [... 33 0.039
gi|148596965 mucoepidermoid carcinoma translocated 1 isoform 1 [... 33 0.039
gi|41349482 proline-rich protein BstNI subfamily 1 isoform 1 pre... 33 0.039
gi|41349486 proline-rich protein BstNI subfamily 1 isoform 3 pre... 33 0.039
gi|41349484 proline-rich protein BstNI subfamily 1 isoform 2 pre... 33 0.039
gi|160707881 formin 2 [Homo sapiens] 33 0.051
gi|189217919 protein associated with topoisomerase II homolog 1 ... 33 0.067
gi|163965366 nascent polypeptide-associated complex alpha subuni... 33 0.067
gi|23200002 NOL1/NOP2/Sun domain family, member 5C isoform 2 [Ho... 33 0.067
gi|4557853 transcription factor SOX9 [Homo sapiens] 32 0.087
gi|47778921 alpha 1 type XIX collagen precursor [Homo sapiens] 32 0.087
gi|209571537 proline-rich protein BstNI subfamily 2 [Homo sapiens] 32 0.087
gi|111118972 collagen, type XI, alpha 2 isoform 2 preproprotein ... 32 0.11
gi|111118968 collagen, type XI, alpha 2 isoform 3 preproprotein ... 32 0.11
gi|111118970 collagen, type XI, alpha 2 isoform 1 preproprotein ... 32 0.11
gi|32140760 collagen, type XXVII, alpha 1 [Homo sapiens] 32 0.11
gi|156071472 CD2 molecule [Homo sapiens] 32 0.15
gi|169206080 PREDICTED: hypothetical protein LOC100132234 [Homo ... 32 0.15
>gi|239756949 PREDICTED: hypothetical protein [Homo sapiens]
Length = 121
Score = 247 bits (631), Expect = 1e-66
Identities = 121/121 (100%), Positives = 121/121 (100%)
Query: 1 MLSVPDSRRKPSPHIGQETTSISKLRRKGEVAGGLTGLNSCHLPPIQKARPHPGQTHTSV 60
MLSVPDSRRKPSPHIGQETTSISKLRRKGEVAGGLTGLNSCHLPPIQKARPHPGQTHTSV
Sbjct: 1 MLSVPDSRRKPSPHIGQETTSISKLRRKGEVAGGLTGLNSCHLPPIQKARPHPGQTHTSV 60
Query: 61 RLTGGPVLAGKLLAKRPRSPPSPNGERGSAASRSPTAAPQQRPRSPVGGRQELTEAAPLP 120
RLTGGPVLAGKLLAKRPRSPPSPNGERGSAASRSPTAAPQQRPRSPVGGRQELTEAAPLP
Sbjct: 61 RLTGGPVLAGKLLAKRPRSPPSPNGERGSAASRSPTAAPQQRPRSPVGGRQELTEAAPLP 120
Query: 121 K 121
K
Sbjct: 121 K 121
>gi|239751436 PREDICTED: hypothetical protein [Homo sapiens]
Length = 121
Score = 243 bits (620), Expect = 2e-65
Identities = 119/121 (98%), Positives = 119/121 (98%)
Query: 1 MLSVPDSRRKPSPHIGQETTSISKLRRKGEVAGGLTGLNSCHLPPIQKARPHPGQTHTSV 60
MLSVPDSRRKPSPHIGQETTSISKLRRKGEVAGGLTGLNSCHLPPIQKARPHPGQTHTSV
Sbjct: 1 MLSVPDSRRKPSPHIGQETTSISKLRRKGEVAGGLTGLNSCHLPPIQKARPHPGQTHTSV 60
Query: 61 RLTGGPVLAGKLLAKRPRSPPSPNGERGSAASRSPTAAPQQRPRSPVGGRQELTEAAPLP 120
LTGGPVLAGKLLAKRPRSPPSPNGERGSA SRSPTAAPQQRPRSPVGGRQELTEAAPLP
Sbjct: 61 SLTGGPVLAGKLLAKRPRSPPSPNGERGSAESRSPTAAPQQRPRSPVGGRQELTEAAPLP 120
Query: 121 K 121
K
Sbjct: 121 K 121
>gi|239745941 PREDICTED: hypothetical protein [Homo sapiens]
Length = 121
Score = 240 bits (612), Expect = 2e-64
Identities = 118/121 (97%), Positives = 118/121 (97%)
Query: 1 MLSVPDSRRKPSPHIGQETTSISKLRRKGEVAGGLTGLNSCHLPPIQKARPHPGQTHTSV 60
MLSVPDSRRKPSPHIGQETTSISKLRRKGEVAGGLTGLNSCHLPPIQKARPHPGQT TSV
Sbjct: 1 MLSVPDSRRKPSPHIGQETTSISKLRRKGEVAGGLTGLNSCHLPPIQKARPHPGQTRTSV 60
Query: 61 RLTGGPVLAGKLLAKRPRSPPSPNGERGSAASRSPTAAPQQRPRSPVGGRQELTEAAPLP 120
LTGGPVLAGKLLAKRPRSPPSPNGERGSA SRSPTAAPQQRPRSPVGGRQELTEAAPLP
Sbjct: 61 SLTGGPVLAGKLLAKRPRSPPSPNGERGSAESRSPTAAPQQRPRSPVGGRQELTEAAPLP 120
Query: 121 K 121
K
Sbjct: 121 K 121
>gi|19924099 synapsin I isoform Ia [Homo sapiens]
Length = 705
Score = 38.1 bits (87), Expect = 0.002
Identities = 29/98 (29%), Positives = 41/98 (41%), Gaps = 23/98 (23%)
Query: 44 PPIQKARPHPGQTHTSVRLTGGPVLAGKLLAKRPRSPPSPNGERG--------SAASRSP 95
P Q A P GQ S + GGP G A RP + PSP + G S + +P
Sbjct: 518 PASQAAPPTQGQGRQSRPVAGGP---GAPPAARPPASPSPQRQAGPPQATRQTSVSGPAP 574
Query: 96 TAA------------PQQRPRSPVGGRQELTEAAPLPK 121
A P Q+P P G ++ ++A P+P+
Sbjct: 575 PKASGAPPGGQQRQGPPQKPPGPAGPTRQASQAGPVPR 612
Score = 30.8 bits (68), Expect = 0.25
Identities = 27/77 (35%), Positives = 33/77 (42%), Gaps = 6/77 (7%)
Query: 44 PPIQKARPHPGQTHTSVRLTGGPVLAGKLLAKRPRSPPSPNGERGSAASRSPTAAPQQRP 103
PP+Q+ P GQ H L+G AG L +R SP S + S A +P Q R
Sbjct: 479 PPLQQRPPPQGQQH----LSGLGPPAGSPLPQRLPSPTSAPQQPASQA--APPTQGQGRQ 532
Query: 104 RSPVGGRQELTEAAPLP 120
PV G AA P
Sbjct: 533 SRPVAGGPGAPPAARPP 549
Score = 25.8 bits (55), Expect = 8.2
Identities = 15/46 (32%), Positives = 20/46 (43%), Gaps = 3/46 (6%)
Query: 75 KRPRSPPSPNGERGSAASRSPTAAPQQRPRSPVGGRQELTEAAPLP 120
+RP+ PP P G A+ P A +R G + AAP P
Sbjct: 26 QRPQPPPPPPGAHSPGATPGPGTATAERSS---GVAPAASPAAPSP 68
>gi|19924097 synapsin I isoform Ib [Homo sapiens]
Length = 669
Score = 38.1 bits (87), Expect = 0.002
Identities = 29/98 (29%), Positives = 41/98 (41%), Gaps = 23/98 (23%)
Query: 44 PPIQKARPHPGQTHTSVRLTGGPVLAGKLLAKRPRSPPSPNGERG--------SAASRSP 95
P Q A P GQ S + GGP G A RP + PSP + G S + +P
Sbjct: 518 PASQAAPPTQGQGRQSRPVAGGP---GAPPAARPPASPSPQRQAGPPQATRQTSVSGPAP 574
Query: 96 TAA------------PQQRPRSPVGGRQELTEAAPLPK 121
A P Q+P P G ++ ++A P+P+
Sbjct: 575 PKASGAPPGGQQRQGPPQKPPGPAGPTRQASQAGPVPR 612
Score = 30.8 bits (68), Expect = 0.25
Identities = 27/77 (35%), Positives = 33/77 (42%), Gaps = 6/77 (7%)
Query: 44 PPIQKARPHPGQTHTSVRLTGGPVLAGKLLAKRPRSPPSPNGERGSAASRSPTAAPQQRP 103
PP+Q+ P GQ H L+G AG L +R SP S + S A +P Q R
Sbjct: 479 PPLQQRPPPQGQQH----LSGLGPPAGSPLPQRLPSPTSAPQQPASQA--APPTQGQGRQ 532
Query: 104 RSPVGGRQELTEAAPLP 120
PV G AA P
Sbjct: 533 SRPVAGGPGAPPAARPP 549
Score = 25.8 bits (55), Expect = 8.2
Identities = 15/46 (32%), Positives = 20/46 (43%), Gaps = 3/46 (6%)
Query: 75 KRPRSPPSPNGERGSAASRSPTAAPQQRPRSPVGGRQELTEAAPLP 120
+RP+ PP P G A+ P A +R G + AAP P
Sbjct: 26 QRPQPPPPPPGAHSPGATPGPGTATAERSS---GVAPAASPAAPSP 68
>gi|194578898 hypothetical protein LOC100170841 [Homo sapiens]
Length = 379
Score = 36.6 bits (83), Expect = 0.005
Identities = 32/103 (31%), Positives = 41/103 (39%), Gaps = 18/103 (17%)
Query: 11 PSPHIGQETTSISKLRRKGEVAGG----LTGLNSCHLPPIQKARPHPGQTHTSVRLTGGP 66
P+ G++ + RR E GG G+ SC P A PHP ++ TS
Sbjct: 100 PNTAAGEDADVAACPRRGEEEEGGGGFPHFGVRSCAPPGRCPAPPHPRESTTS------- 152
Query: 67 VLAGKLLAKRPRSPPSPNGERGSAASRSPTAAPQQRPRSPVGG 109
+ PR P +RG AAS P P RP SP G
Sbjct: 153 -----FASAPPRPAPGLEPQRGPAAS--PPQEPSSRPPSPPAG 188
>gi|169163728 PREDICTED: hypothetical protein [Homo sapiens]
Length = 237
Score = 35.8 bits (81), Expect = 0.008
Identities = 35/117 (29%), Positives = 46/117 (39%), Gaps = 17/117 (14%)
Query: 9 RKPSPHIGQETTSISKLRRKGEVAGGLTGLNSCHLPPIQKARPHPGQTHTSVRLTGGPVL 68
R PSP + + RR+G L G + P AR P + + R P
Sbjct: 35 RPPSP--------VGRARRRGTWLRVLRGPRAPSPAPALPARARPPREN---RKRAVPAR 83
Query: 69 AGKLLAKRPRSPPSPNGERGSAASRSPTAAPQQ------RPRSPVGGRQELTEAAPL 119
A + KRP + E S RS P++ RPR G R+ L EAAPL
Sbjct: 84 AARGPPKRPAGGQTGGVEAASGEERSQPRRPRRPPPAPRRPRPAPGRRKSLYEAAPL 140
>gi|169163708 PREDICTED: hypothetical protein [Homo sapiens]
Length = 237
Score = 35.8 bits (81), Expect = 0.008
Identities = 35/117 (29%), Positives = 46/117 (39%), Gaps = 17/117 (14%)
Query: 9 RKPSPHIGQETTSISKLRRKGEVAGGLTGLNSCHLPPIQKARPHPGQTHTSVRLTGGPVL 68
R PSP + + RR+G L G + P AR P + + R P
Sbjct: 35 RPPSP--------VGRARRRGTWLRVLRGPRAPSPAPALPARARPPREN---RKRAVPAR 83
Query: 69 AGKLLAKRPRSPPSPNGERGSAASRSPTAAPQQ------RPRSPVGGRQELTEAAPL 119
A + KRP + E S RS P++ RPR G R+ L EAAPL
Sbjct: 84 AARGPPKRPAGGQTGGVEAASGEERSQPRRPRRPPPAPRRPRPAPGRRKSLYEAAPL 140
>gi|169163019 PREDICTED: hypothetical protein [Homo sapiens]
Length = 237
Score = 35.8 bits (81), Expect = 0.008
Identities = 35/117 (29%), Positives = 46/117 (39%), Gaps = 17/117 (14%)
Query: 9 RKPSPHIGQETTSISKLRRKGEVAGGLTGLNSCHLPPIQKARPHPGQTHTSVRLTGGPVL 68
R PSP + + RR+G L G + P AR P + + R P
Sbjct: 35 RPPSP--------VGRARRRGTWLRVLRGPRAPSPAPALPARARPPREN---RKRAVPAR 83
Query: 69 AGKLLAKRPRSPPSPNGERGSAASRSPTAAPQQ------RPRSPVGGRQELTEAAPL 119
A + KRP + E S RS P++ RPR G R+ L EAAPL
Sbjct: 84 AARGPPKRPAGGQTGGVEAASGEERSQPRRPRRPPPAPRRPRPAPGRRKSLYEAAPL 140
>gi|219804203 rabphilin 3A homolog isoform 1 [Homo sapiens]
Length = 694
Score = 35.0 bits (79), Expect = 0.013
Identities = 33/113 (29%), Positives = 41/113 (36%), Gaps = 12/113 (10%)
Query: 16 GQETTSISKLRRKGEVAGGLTGLNSCHLPPIQKARPHPGQTHTSVRLTGGPVLAGKLLAK 75
G + S + LRR V S P A P PGQ T GP AG+ +
Sbjct: 258 GDSSRSPAGLRRANSVQASRPAPGSVQSP----APPQPGQPGTPGGSRPGPGPAGRFPDQ 313
Query: 76 RPRSPPS-------PNGER-GSAASRSPTAAPQQRPRSPVGGRQELTEAAPLP 120
+P PS P ER G A + R P G + + AAP P
Sbjct: 314 KPEVAPSDPGTTAPPREERTGGVGGYPAVGAREDRMSHPSGPYSQASAAAPQP 366
>gi|45267837 rabphilin 3A homolog isoform 2 [Homo sapiens]
Length = 690
Score = 35.0 bits (79), Expect = 0.013
Identities = 33/113 (29%), Positives = 41/113 (36%), Gaps = 12/113 (10%)
Query: 16 GQETTSISKLRRKGEVAGGLTGLNSCHLPPIQKARPHPGQTHTSVRLTGGPVLAGKLLAK 75
G + S + LRR V S P A P PGQ T GP AG+ +
Sbjct: 254 GDSSRSPAGLRRANSVQASRPAPGSVQSP----APPQPGQPGTPGGSRPGPGPAGRFPDQ 309
Query: 76 RPRSPPS-------PNGER-GSAASRSPTAAPQQRPRSPVGGRQELTEAAPLP 120
+P PS P ER G A + R P G + + AAP P
Sbjct: 310 KPEVAPSDPGTTAPPREERTGGVGGYPAVGAREDRMSHPSGPYSQASAAAPQP 362
>gi|82546872 DNA helicase homolog PIF1 [Homo sapiens]
Length = 641
Score = 33.9 bits (76), Expect = 0.030
Identities = 26/64 (40%), Positives = 30/64 (46%), Gaps = 8/64 (12%)
Query: 65 GPVLA-GKLLAKRPR-----SPPSPNGERGSAASRSPTAAPQQRPRSPVGGRQELTEAA- 117
GP A +LL RPR SP P R AA+R P +RP P G + TEA
Sbjct: 131 GPASARAQLLGPRPRDFVTISPVQPEERRLRAATRVPDTTLVKRPVEPQAGAEPSTEAPR 190
Query: 118 -PLP 120
PLP
Sbjct: 191 WPLP 194
>gi|148596988 mucoepidermoid carcinoma translocated 1 isoform 3
[Homo sapiens]
Length = 650
Score = 33.5 bits (75), Expect = 0.039
Identities = 21/64 (32%), Positives = 28/64 (43%), Gaps = 9/64 (14%)
Query: 44 PPIQKARPHPGQTHTSVRL-TGGPVLAGKLLAKRPRSPPSPNGERGSAASRSPTAAPQQR 102
PP + P P VRL GGP+L L + P+ PP A P++ PQ
Sbjct: 390 PPASQQPPPPPPPQAPVRLPPGGPLLPSASLTRGPQPPP--------LAVTVPSSLPQSP 441
Query: 103 PRSP 106
P +P
Sbjct: 442 PENP 445
>gi|148596965 mucoepidermoid carcinoma translocated 1 isoform 1
[Homo sapiens]
Length = 634
Score = 33.5 bits (75), Expect = 0.039
Identities = 21/64 (32%), Positives = 28/64 (43%), Gaps = 9/64 (14%)
Query: 44 PPIQKARPHPGQTHTSVRL-TGGPVLAGKLLAKRPRSPPSPNGERGSAASRSPTAAPQQR 102
PP + P P VRL GGP+L L + P+ PP A P++ PQ
Sbjct: 374 PPASQQPPPPPPPQAPVRLPPGGPLLPSASLTRGPQPPP--------LAVTVPSSLPQSP 425
Query: 103 PRSP 106
P +P
Sbjct: 426 PENP 429
>gi|41349482 proline-rich protein BstNI subfamily 1 isoform 1
preproprotein [Homo sapiens]
Length = 331
Score = 33.5 bits (75), Expect = 0.039
Identities = 22/64 (34%), Positives = 24/64 (37%), Gaps = 10/64 (15%)
Query: 47 QKARPHPGQTHTSVRLTGGPVLAGKLLAKRPRSPPSPNGERGSAASRSPTAAPQQRPRSP 106
Q AR PG+ G P G P+ PP P G P PQ PR P
Sbjct: 272 QSARSPPGKPQ------GPPQQEGN----NPQGPPPPAGGNPQQPQAPPAGQPQGPPRPP 321
Query: 107 VGGR 110
GGR
Sbjct: 322 QGGR 325
Score = 30.0 bits (66), Expect = 0.43
Identities = 24/75 (32%), Positives = 30/75 (40%), Gaps = 13/75 (17%)
Query: 44 PPIQKARPHPGQTHTSVRLTGGPVLAGKLLAKRPRSPPSPNGERG-------SAASRSPT 96
PP Q G + G P GK +P+ PP P +G S +S+SP
Sbjct: 161 PPPQGGNQPQGPPPPPGKPQGPPPQGGK----KPQGPPPPGKPQGPPPQGDKSRSSQSPP 216
Query: 97 AAPQQRPRSPVGGRQ 111
PQ P P GG Q
Sbjct: 217 GKPQGPP--PQGGNQ 229
Score = 28.9 bits (63), Expect = 0.97
Identities = 24/75 (32%), Positives = 28/75 (37%), Gaps = 13/75 (17%)
Query: 44 PPIQKARPHPGQTHTSVRLTGGPVLAGKLLAKRPRSPPSPNGERG-------SAASRSPT 96
PP Q G + G P G RP+ PP P +G S + RSP
Sbjct: 100 PPPQGGNQPQGPPPPPGKPQGPPPQGGN----RPQGPPPPGKPQGPPPQGDKSRSPRSPP 155
Query: 97 AAPQQRPRSPVGGRQ 111
PQ P P GG Q
Sbjct: 156 GKPQGPP--PQGGNQ 168
Score = 26.6 bits (57), Expect = 4.8
Identities = 16/43 (37%), Positives = 20/43 (46%), Gaps = 9/43 (20%)
Query: 76 RPRSPPSPNGERG-------SAASRSPTAAPQQRPRSPVGGRQ 111
+P+ PP P +G S + RSP PQ P P GG Q
Sbjct: 67 KPQGPPPPGKPQGPPPQGDKSRSPRSPPGKPQGPP--PQGGNQ 107
>gi|41349486 proline-rich protein BstNI subfamily 1 isoform 3
preproprotein [Homo sapiens]
Length = 178
Score = 33.5 bits (75), Expect = 0.039
Identities = 22/64 (34%), Positives = 24/64 (37%), Gaps = 10/64 (15%)
Query: 47 QKARPHPGQTHTSVRLTGGPVLAGKLLAKRPRSPPSPNGERGSAASRSPTAAPQQRPRSP 106
Q AR PG+ G P G P+ PP P G P PQ PR P
Sbjct: 119 QSARSPPGKPQ------GPPQQEGN----NPQGPPPPAGGNPQQPQAPPAGQPQGPPRPP 168
Query: 107 VGGR 110
GGR
Sbjct: 169 QGGR 172
Score = 25.8 bits (55), Expect = 8.2
Identities = 15/44 (34%), Positives = 21/44 (47%), Gaps = 9/44 (20%)
Query: 76 RPRSPPSPNGERG-------SAASRSPTAAPQQRPRSPVGGRQE 112
+P+ PP P +G S + RSP PQ P P GG+ +
Sbjct: 67 KPQGPPPPGKPQGPPPQGDKSRSPRSPPGKPQGPP--PQGGKPQ 108
>gi|41349484 proline-rich protein BstNI subfamily 1 isoform 2
preproprotein [Homo sapiens]
Length = 198
Score = 33.5 bits (75), Expect = 0.039
Identities = 22/64 (34%), Positives = 24/64 (37%), Gaps = 10/64 (15%)
Query: 47 QKARPHPGQTHTSVRLTGGPVLAGKLLAKRPRSPPSPNGERGSAASRSPTAAPQQRPRSP 106
Q AR PG+ G P G P+ PP P G P PQ PR P
Sbjct: 139 QSARSPPGKPQ------GPPQQEGN----NPQGPPPPAGGNPQQPQAPPAGQPQGPPRPP 188
Query: 107 VGGR 110
GGR
Sbjct: 189 QGGR 192
Score = 25.8 bits (55), Expect = 8.2
Identities = 15/44 (34%), Positives = 21/44 (47%), Gaps = 9/44 (20%)
Query: 76 RPRSPPSPNGERG-------SAASRSPTAAPQQRPRSPVGGRQE 112
+P+ PP P +G S + RSP PQ P P GG+ +
Sbjct: 67 KPQGPPPPGKPQGPPPQGDKSRSPRSPPGKPQGPP--PQGGKPQ 108
>gi|160707881 formin 2 [Homo sapiens]
Length = 1722
Score = 33.1 bits (74), Expect = 0.051
Identities = 29/88 (32%), Positives = 34/88 (38%), Gaps = 3/88 (3%)
Query: 33 GGLTGLNSCHLPPIQKARPHPGQTHTSVRLTGGPVLAGKLLA--KRPRSPPSPNGERGSA 90
G GL+ L P A PG T L+ L L A + P+ PPSP G S
Sbjct: 244 GAFLGLDRFLLGPSGGAGEAPGSPDTEQALSALSDLPESLAAEPREPQQPPSPGGLPVSE 303
Query: 91 ASRSPTAAPQQRPRSPVGGRQELTEAAP 118
A P A P + SP EA P
Sbjct: 304 APSLPAAQPAAKD-SPSSTAFPFPEAGP 330
>gi|189217919 protein associated with topoisomerase II homolog 1
[Homo sapiens]
Length = 770
Score = 32.7 bits (73), Expect = 0.067
Identities = 36/123 (29%), Positives = 47/123 (38%), Gaps = 14/123 (11%)
Query: 1 MLSVPDSRRKPSPHIGQETTSISKLRRKGEVAGGLTGLNSCHLPPIQKARPHPGQTHTSV 60
+ SVP+S P +S L+R ++ GG +Q R P Q
Sbjct: 237 LCSVPNSSLLGHPFPPSVPPVLSPLQR-AQLLGGAQ---------LQPGRMSPSQFARVP 286
Query: 61 RLTGGPVLA--GKLLAKRPRS--PPSPNGERGSAASRSPTAAPQQRPRSPVGGRQELTEA 116
G P+ A KLL R PP+P +A S T PQQ P P Q L
Sbjct: 287 GFVGSPLAAMNPKLLQGRVGQMLPPAPGFRAFFSAPPSATPPPQQHPPGPGPHLQNLRSQ 346
Query: 117 APL 119
AP+
Sbjct: 347 APM 349
>gi|163965366 nascent polypeptide-associated complex alpha subunit
isoform a [Homo sapiens]
Length = 2078
Score = 32.7 bits (73), Expect = 0.067
Identities = 29/123 (23%), Positives = 44/123 (35%), Gaps = 8/123 (6%)
Query: 1 MLSVPDSRRKPSPHIGQETTSISKLRRKGEVAGGLTGLNSCHLPPIQKARPHPGQTHTSV 60
++++P + P+ ++ ++S + A P K P P T
Sbjct: 890 VVNLPFPKEGPATPAPKQAPALSMTSSSPKKARATPAPKGIPASPSPKGAPTPPAA-TPP 948
Query: 61 RLTGGPVLAGKLLAKRP--RSPPSPNGERGSAASRSPTAAPQQRPRSPVGGRQELTEAAP 118
GGP A P +PPSP G + + + P P SP GG A P
Sbjct: 949 SPKGGPATPSPKWAPTPPAATPPSPKGGPATPSPKGAPTPPAATPPSPKGG-----PATP 1003
Query: 119 LPK 121
PK
Sbjct: 1004 SPK 1006
Score = 32.3 bits (72), Expect = 0.087
Identities = 33/121 (27%), Positives = 42/121 (34%), Gaps = 9/121 (7%)
Query: 3 SVPDSRRKPSPHIGQETTSISKLRRKGEVAGGLTGLNSCHLPPIQKARPHPGQTHTSVRL 62
S P + PSP T + K A + P ++ A P T S +
Sbjct: 1033 STPPAATPPSPKGSPAATPLPKGAPTTPAATLPSPKGGPATPSLKGAPTPPAATPPSPK- 1091
Query: 63 TGGPVLAGKLLAKRP--RSPPSPNGERGSAASRSPTAAPQQRPRSPVGGRQELTEAAPLP 120
GGP A P +PPSP G + + P P SP GG A P P
Sbjct: 1092 -GGPATPSPKGAPMPPAATPPSPKGGLATPPHKGAPTTPAATPPSPKGGL-----ATPPP 1145
Query: 121 K 121
K
Sbjct: 1146 K 1146
Score = 30.4 bits (67), Expect = 0.33
Identities = 21/66 (31%), Positives = 26/66 (39%), Gaps = 3/66 (4%)
Query: 45 PIQKARPHPGQTHTSVRLTGGPVLAGKLLAKRP--RSPPSPNGERGSAASRSPTAAPQQR 102
P K P+P T GGP + A P +PPSP G G+ + P
Sbjct: 1281 PPHKGAPNPAVV-TPPSPKGGPATSPPKGAPTPPAATPPSPKGSPGTPPPKGAPTPPAVT 1339
Query: 103 PRSPVG 108
P SP G
Sbjct: 1340 PPSPKG 1345
Score = 29.6 bits (65), Expect = 0.57
Identities = 30/108 (27%), Positives = 38/108 (35%), Gaps = 5/108 (4%)
Query: 5 PDSRRKPSPHIGQETTSISKLRRKGEVAGGLTGLNSCHLPPIQKARPH-PGQTHTSVRLT 63
P + PSP T K A + S P+ K P P T S +
Sbjct: 1011 PPAVTPPSPKGSPAATPFPKGASTPPAATPPSPKGSPAATPLPKGAPTTPAATLPSPK-- 1068
Query: 64 GGPVLAGKLLAKRP--RSPPSPNGERGSAASRSPTAAPQQRPRSPVGG 109
GGP A P +PPSP G + + + P P SP GG
Sbjct: 1069 GGPATPSLKGAPTPPAATPPSPKGGPATPSPKGAPMPPAATPPSPKGG 1116
Score = 28.5 bits (62), Expect = 1.3
Identities = 27/88 (30%), Positives = 31/88 (35%), Gaps = 14/88 (15%)
Query: 44 PPIQK---ARPHPGQTHTSVRLT-----GGPVLAGKLLAKRP--RSPPSPNGERGSAASR 93
PP K A P P T T GGP A P +PPSP G + + +
Sbjct: 947 PPSPKGGPATPSPKWAPTPPAATPPSPKGGPATPSPKGAPTPPAATPPSPKGGPATPSPK 1006
Query: 94 SPTAAPQQRPRSPVGGRQELTEAAPLPK 121
P P SP G A P PK
Sbjct: 1007 GAPTPPAVTPPSPKGS----PAATPFPK 1030
Score = 28.5 bits (62), Expect = 1.3
Identities = 27/89 (30%), Positives = 33/89 (37%), Gaps = 17/89 (19%)
Query: 44 PPIQK---ARPHPGQTHTSVRLTGGPVLAGKLLAKRPR--------SPPSPNGERGSAAS 92
PP K A P P T+ T P G L P+ +PPSP G + +
Sbjct: 1179 PPSPKGGLATPSPKGAPTTPAATP-PSPKGGLATPSPKGAPTTPAATPPSPKGGLATPSP 1237
Query: 93 RSPTAAPQQRPRSPVGGRQELTEAAPLPK 121
+ P P SP GG A P PK
Sbjct: 1238 KGAPTTPAATPPSPKGG-----PATPPPK 1261
Score = 28.1 bits (61), Expect = 1.6
Identities = 23/79 (29%), Positives = 27/79 (34%), Gaps = 15/79 (18%)
Query: 51 PHPGQTHTSVRLTGGPVLAGKLLAKRPR--------SPPSPNGERGSAASRSPTAAPQQR 102
PH G T P G L P+ +PPSP G + + P
Sbjct: 1121 PHKGAPTTPAATPPSP--KGGLATPPPKGAPTTPAATPPSPKGGLATPPPKGAPTTPAAT 1178
Query: 103 PRSPVGGRQELTEAAPLPK 121
P SP GG A P PK
Sbjct: 1179 PPSPKGGL-----ATPSPK 1192
Score = 28.1 bits (61), Expect = 1.6
Identities = 15/43 (34%), Positives = 19/43 (44%), Gaps = 5/43 (11%)
Query: 79 SPPSPNGERGSAASRSPTAAPQQRPRSPVGGRQELTEAAPLPK 121
+PPSP G + + + P P SP GG A P PK
Sbjct: 1178 TPPSPKGGLATPSPKGAPTTPAATPPSPKGGL-----ATPSPK 1215
>gi|23200002 NOL1/NOP2/Sun domain family, member 5C isoform 2 [Homo
sapiens]
Length = 291
Score = 32.7 bits (73), Expect = 0.067
Identities = 29/107 (27%), Positives = 46/107 (42%), Gaps = 15/107 (14%)
Query: 11 PSPHIGQETTSISKLRRKGEVAGGLT-GLNSCHLPPIQKARPH------PGQTHT----- 58
PSP + S+ + + V L + L P ARPH PG H
Sbjct: 142 PSPRLVYSMCSLCQEENEDMVQDALQQNPGAFRLAPALPARPHRGLSTFPGAEHCLRASP 201
Query: 59 SVRLTGGPVLAGKLLAKRPRSPPSPNGERGSAASRSPTAAPQQRPRS 105
L+GG +A + +R P S + + SA R+P+ AP+++ R+
Sbjct: 202 KTTLSGGFFVA---VIERVEMPTSASQAKASAPERTPSPAPKRKKRA 245
>gi|4557853 transcription factor SOX9 [Homo sapiens]
Length = 509
Score = 32.3 bits (72), Expect = 0.087
Identities = 26/81 (32%), Positives = 34/81 (41%), Gaps = 20/81 (24%)
Query: 42 HLPPIQKARPHPG--QTHTSVRLTGG---------PVLAGKLLAKRPRSPPSPNGERGSA 90
+LPP HPG TH V TG P AG + + ++PP P + A
Sbjct: 297 YLPP----NGHPGVPATHGQVTYTGSYGISSTAATPASAGHVWMSKQQAPPPPPQQPPQA 352
Query: 91 -----ASRSPTAAPQQRPRSP 106
A P AAP Q+P +P
Sbjct: 353 PPAPQAPPQPQAAPPQQPAAP 373
>gi|47778921 alpha 1 type XIX collagen precursor [Homo sapiens]
Length = 1142
Score = 32.3 bits (72), Expect = 0.087
Identities = 27/92 (29%), Positives = 32/92 (34%), Gaps = 3/92 (3%)
Query: 18 ETTSISKLRRKGEVA-GGLTGLNSCHLPPIQKARPHPGQTHTSVRLTGGPVLAGKLLAKR 76
ET + KG+ A GL G N P P G P L G L +
Sbjct: 338 ETGEKGEQGEKGDPALAGLNGENGLKGDLGPHGPPGPKGEKGDTGPPGPPALPGSLGIQG 397
Query: 77 PRSPPSPNGERGSAASRSPTAAPQQRPRSPVG 108
P+ PP G+RG P P P P G
Sbjct: 398 PQGPPGKEGQRGRRGKTGPPGKP--GPPGPPG 427
Score = 26.2 bits (56), Expect = 6.3
Identities = 13/36 (36%), Positives = 15/36 (41%)
Query: 64 GGPVLAGKLLAKRPRSPPSPNGERGSAASRSPTAAP 99
G P L G A P PP G GS + P +P
Sbjct: 968 GKPGLTGMKGAIGPMGPPGNKGSMGSPGHQGPPGSP 1003
>gi|209571537 proline-rich protein BstNI subfamily 2 [Homo sapiens]
Length = 416
Score = 32.3 bits (72), Expect = 0.087
Identities = 26/68 (38%), Positives = 31/68 (45%), Gaps = 11/68 (16%)
Query: 44 PPIQKARPHPGQTHTSVRLTGGPVLAGKLLAKRPRSPPSPNGERGSAASRSPTAAPQQRP 103
PP K + P Q + GP GK P+ PP P G+ S +SRSP PQ P
Sbjct: 134 PPPGKPQGPPPQGGNKPQ---GPPPPGK-----PQGPP-PQGDNKSRSSRSPPGKPQGPP 184
Query: 104 RSPVGGRQ 111
P GG Q
Sbjct: 185 --PQGGNQ 190
Score = 32.3 bits (72), Expect = 0.087
Identities = 23/70 (32%), Positives = 26/70 (37%), Gaps = 3/70 (4%)
Query: 44 PPIQKARPHP--GQTHTSVRLTGG-PVLAGKLLAKRPRSPPSPNGERGSAASRSPTAAPQ 100
PP + P P G S R G P + P+ PP P G P PQ
Sbjct: 341 PPGKPQGPPPQGGSKSRSARSPPGKPQGPPQQEGNNPQGPPPPAGGNPQQPQAPPAGQPQ 400
Query: 101 QRPRSPVGGR 110
PR P GGR
Sbjct: 401 GPPRPPQGGR 410
Score = 31.2 bits (69), Expect = 0.19
Identities = 25/68 (36%), Positives = 31/68 (45%), Gaps = 11/68 (16%)
Query: 44 PPIQKARPHPGQTHTSVRLTGGPVLAGKLLAKRPRSPPSPNGERGSAASRSPTAAPQQRP 103
PP K + P Q + GP GK P+ PP P G+ S ++RSP PQ P
Sbjct: 196 PPPGKPQGPPPQGGNKPQ---GPPPPGK-----PQGPP-PQGDNKSQSARSPPGKPQGPP 246
Query: 104 RSPVGGRQ 111
P GG Q
Sbjct: 247 --PQGGNQ 252
Score = 30.4 bits (67), Expect = 0.33
Identities = 26/68 (38%), Positives = 30/68 (44%), Gaps = 11/68 (16%)
Query: 44 PPIQKARPHPGQTHTSVRLTGGPVLAGKLLAKRPRSPPSPNGERGSAASRSPTAAPQQRP 103
PP K + P Q + GP GK P+ PP P G S +SRSP PQ P
Sbjct: 258 PPPGKPQGPPPQGGNKPQ---GPPPPGK-----PQGPP-PQGGSKSRSSRSPPGKPQGPP 308
Query: 104 RSPVGGRQ 111
P GG Q
Sbjct: 309 --PQGGNQ 314
Score = 27.7 bits (60), Expect = 2.2
Identities = 23/75 (30%), Positives = 28/75 (37%), Gaps = 13/75 (17%)
Query: 44 PPIQKARPHPGQTHTSVRLTGGPVLAGKLLAKRPRSPPSPNGERG-------SAASRSPT 96
PP Q G + G P G +P+ PP P +G S + RSP
Sbjct: 60 PPPQGGNQPQGPPPPPGKPQGPPPQGGN----KPQGPPPPGKPQGPPPQGDKSRSPRSPP 115
Query: 97 AAPQQRPRSPVGGRQ 111
PQ P P GG Q
Sbjct: 116 GKPQGPP--PQGGNQ 128
>gi|111118972 collagen, type XI, alpha 2 isoform 2 preproprotein
[Homo sapiens]
Length = 1650
Score = 32.0 bits (71), Expect = 0.11
Identities = 19/50 (38%), Positives = 22/50 (44%), Gaps = 1/50 (2%)
Query: 64 GGPVLAGKLLAKRPRSPPSPNGERGSAASRSPTAAP-QQRPRSPVGGRQE 112
GGP L G P P GERG+A S P P + P+ P G E
Sbjct: 911 GGPGLKGNEGPSGPPGPAGSPGERGAAGSGGPIGPPGRPGPQGPPGAAGE 960
>gi|111118968 collagen, type XI, alpha 2 isoform 3 preproprotein
[Homo sapiens]
Length = 1629
Score = 32.0 bits (71), Expect = 0.11
Identities = 19/50 (38%), Positives = 22/50 (44%), Gaps = 1/50 (2%)
Query: 64 GGPVLAGKLLAKRPRSPPSPNGERGSAASRSPTAAP-QQRPRSPVGGRQE 112
GGP L G P P GERG+A S P P + P+ P G E
Sbjct: 890 GGPGLKGNEGPSGPPGPAGSPGERGAAGSGGPIGPPGRPGPQGPPGAAGE 939
>gi|111118970 collagen, type XI, alpha 2 isoform 1 preproprotein [Homo
sapiens]
Length = 1736
Score = 32.0 bits (71), Expect = 0.11
Identities = 19/50 (38%), Positives = 22/50 (44%), Gaps = 1/50 (2%)
Query: 64 GGPVLAGKLLAKRPRSPPSPNGERGSAASRSPTAAP-QQRPRSPVGGRQE 112
GGP L G P P GERG+A S P P + P+ P G E
Sbjct: 997 GGPGLKGNEGPSGPPGPAGSPGERGAAGSGGPIGPPGRPGPQGPPGAAGE 1046
>gi|32140760 collagen, type XXVII, alpha 1 [Homo sapiens]
Length = 1860
Score = 32.0 bits (71), Expect = 0.11
Identities = 17/43 (39%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Query: 64 GGPVLAGKLLAKRPRSPPSPNGERGSAASRSPTAAPQQRPRSP 106
G P + G + PR P P GE+GS + P PQ RP P
Sbjct: 1054 GPPGMRGAKGRRGPRGPDGPAGEQGSRGLKGP-PGPQGRPGRP 1095
Score = 28.9 bits (63), Expect = 0.97
Identities = 15/41 (36%), Positives = 17/41 (41%), Gaps = 2/41 (4%)
Query: 77 PRSPPSPNGERGSAASRSPTAAPQQRP--RSPVGGRQELTE 115
P PP P GE+G P P R PVG R + E
Sbjct: 1319 PLGPPGPKGEKGEQGEDGKAEGPPGPPGDRGPVGDRGDRGE 1359
Score = 26.2 bits (56), Expect = 6.3
Identities = 28/96 (29%), Positives = 35/96 (36%), Gaps = 21/96 (21%)
Query: 34 GLTGLNSCHLPP-------IQKARPHPGQTHTSVRLTGGPVLAGKLLAKRPRSPPSPNGE 86
G+ GL PP IQ R PG L G + G L P P P G+
Sbjct: 1538 GMAGLFGPKGPPGDIGFKGIQGPRGPPG-------LMGKEGIVGPLGILGPSGLPGPKGD 1590
Query: 87 RGSAAS---RSPTAAPQQR----PRSPVGGRQELTE 115
+GS + P P R P P GG +L +
Sbjct: 1591 KGSRGDWGLQGPRGPPGPRGRPGPPGPPGGPIQLQQ 1626
>gi|156071472 CD2 molecule [Homo sapiens]
Length = 351
Score = 31.6 bits (70), Expect = 0.15
Identities = 17/49 (34%), Positives = 22/49 (44%), Gaps = 7/49 (14%)
Query: 80 PPSPNGERGSAASRSPTAA-------PQQRPRSPVGGRQELTEAAPLPK 121
PP P G R A S P PQ+RP +P G + + PLP+
Sbjct: 282 PPPPPGHRSQAPSHRPPPPGHRVQHQPQKRPPAPSGTQVHQQKGPPLPR 330
Score = 28.9 bits (63), Expect = 0.97
Identities = 17/68 (25%), Positives = 28/68 (41%), Gaps = 1/68 (1%)
Query: 45 PIQKARPHPGQTHTSVRLTGGPVLAGKLLAKRPRS-PPSPNGERGSAASRSPTAAPQQRP 103
P P P H S + P G + +P+ PP+P+G + P P+ +P
Sbjct: 276 PATSQHPPPPPGHRSQAPSHRPPPPGHRVQHQPQKRPPAPSGTQVHQQKGPPLPRPRVQP 335
Query: 104 RSPVGGRQ 111
+ P G +
Sbjct: 336 KPPHGAAE 343
>gi|169206080 PREDICTED: hypothetical protein LOC100132234 [Homo
sapiens]
Length = 202
Score = 31.6 bits (70), Expect = 0.15
Identities = 22/65 (33%), Positives = 28/65 (43%), Gaps = 7/65 (10%)
Query: 61 RLTGGPVLAGKLLAKRPRSPP-SPNGERG------SAASRSPTAAPQQRPRSPVGGRQEL 113
RL P + LA+RP PP P G G +AA +P P RP S + R +
Sbjct: 89 RLPPRPTRSPAPLARRPGKPPRRPKGAAGHPSAPPAAAPAAPAQPPAPRPESQLSDRPQS 148
Query: 114 TEAAP 118
E P
Sbjct: 149 WEQKP 153
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.310 0.130 0.383
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,256,304
Number of Sequences: 37866
Number of extensions: 361798
Number of successful extensions: 3194
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 147
Number of HSP's successfully gapped in prelim test: 266
Number of HSP's that attempted gapping in prelim test: 2500
Number of HSP's gapped (non-prelim): 930
length of query: 121
length of database: 18,247,518
effective HSP length: 89
effective length of query: 32
effective length of database: 14,877,444
effective search space: 476078208
effective search space used: 476078208
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.