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Search of human proteins with 119943098
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|119943098 dihydropyrimidine dehydrogenase isoform 1 [Homo
sapiens]
(1025 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|119943098 dihydropyrimidine dehydrogenase isoform 1 [Homo sap... 2072 0.0
gi|237757300 dihydropyrimidine dehydrogenase isoform 2 [Homo sap... 340 4e-93
gi|45006951 dihydroorotate dehydrogenase precursor [Homo sapiens] 57 1e-07
gi|40807366 PP3111 protein [Homo sapiens] 35 0.36
gi|28559080 spermine oxidase isoform 4 [Homo sapiens] 34 0.62
gi|28559078 spermine oxidase isoform 3 [Homo sapiens] 34 0.62
gi|28559076 spermine oxidase isoform 2 [Homo sapiens] 34 0.62
gi|28559074 spermine oxidase isoform 1 [Homo sapiens] 34 0.62
gi|18765727 myogenin [Homo sapiens] 34 0.81
gi|116517330 factor in the germline alpha [Homo sapiens] 33 1.4
gi|31742496 dihydrouridine synthase 4-like [Homo sapiens] 33 1.4
gi|108773784 ATP-binding cassette, sub-family E, member 1 [Homo ... 33 1.8
gi|108773782 ATP-binding cassette, sub-family E, member 1 [Homo ... 33 1.8
gi|183227703 mitochondrial translation optimization 1 homolog is... 32 4.0
gi|19882217 mitochondrial translation optimization 1 homolog iso... 32 4.0
gi|74024895 mitochondrial translation optimization 1 homolog iso... 32 4.0
gi|157671929 phosphoinositide-3-kinase, class 2 alpha polypeptid... 31 6.8
gi|154354987 hook homolog 2 isoform 2 [Homo sapiens] 31 6.8
gi|154354985 hook homolog 2 isoform 1 [Homo sapiens] 31 6.8
gi|229577391 pyridine nucleotide-disulphide oxidoreductase domai... 30 8.9
gi|23097308 spectrin repeat containing, nuclear envelope 1 isofo... 30 8.9
gi|154277116 spectrin repeat containing, nuclear envelope 1 isof... 30 8.9
gi|194018565 zinc finger protein 100 [Homo sapiens] 30 8.9
>gi|119943098 dihydropyrimidine dehydrogenase isoform 1 [Homo sapiens]
Length = 1025
Score = 2072 bits (5369), Expect = 0.0
Identities = 1025/1025 (100%), Positives = 1025/1025 (100%)
Query: 1 MAPVLSKDSADIESILALNPRTQTHATLCSTSAKKLDKKHWKRNPDKNCFNCEKLENNFD 60
MAPVLSKDSADIESILALNPRTQTHATLCSTSAKKLDKKHWKRNPDKNCFNCEKLENNFD
Sbjct: 1 MAPVLSKDSADIESILALNPRTQTHATLCSTSAKKLDKKHWKRNPDKNCFNCEKLENNFD 60
Query: 61 DIKHTTLGERGALREAMRCLKCADAPCQKSCPTNLDIKSFITSIANKNYYGAAKMIFSDN 120
DIKHTTLGERGALREAMRCLKCADAPCQKSCPTNLDIKSFITSIANKNYYGAAKMIFSDN
Sbjct: 61 DIKHTTLGERGALREAMRCLKCADAPCQKSCPTNLDIKSFITSIANKNYYGAAKMIFSDN 120
Query: 121 PLGLTCGMVCPTSDLCVGGCNLYATEEGPINIGGLQQFATEVFKAMSIPQIRNPSLPPPE 180
PLGLTCGMVCPTSDLCVGGCNLYATEEGPINIGGLQQFATEVFKAMSIPQIRNPSLPPPE
Sbjct: 121 PLGLTCGMVCPTSDLCVGGCNLYATEEGPINIGGLQQFATEVFKAMSIPQIRNPSLPPPE 180
Query: 181 KMSEAYSAKIALFGAGPASISCASFLARLGYSDITIFEKQEYVGGLSTSEIPQFRLPYDV 240
KMSEAYSAKIALFGAGPASISCASFLARLGYSDITIFEKQEYVGGLSTSEIPQFRLPYDV
Sbjct: 181 KMSEAYSAKIALFGAGPASISCASFLARLGYSDITIFEKQEYVGGLSTSEIPQFRLPYDV 240
Query: 241 VNFEIELMKDLGVKIICGKSLSVNEMTLSTLKEKGYKAAFIGIGLPEPNKDAIFQGLTQD 300
VNFEIELMKDLGVKIICGKSLSVNEMTLSTLKEKGYKAAFIGIGLPEPNKDAIFQGLTQD
Sbjct: 241 VNFEIELMKDLGVKIICGKSLSVNEMTLSTLKEKGYKAAFIGIGLPEPNKDAIFQGLTQD 300
Query: 301 QGFYTSKDFLPLVAKGSKAGMCACHSPLPSIRGVVIVLGAGDTAFDCATSALRCGARRVF 360
QGFYTSKDFLPLVAKGSKAGMCACHSPLPSIRGVVIVLGAGDTAFDCATSALRCGARRVF
Sbjct: 301 QGFYTSKDFLPLVAKGSKAGMCACHSPLPSIRGVVIVLGAGDTAFDCATSALRCGARRVF 360
Query: 361 IVFRKGFVNIRAVPEEMELAKEEKCEFLPFLSPRKVIVKGGRIVAMQFVRTEQDETGKWN 420
IVFRKGFVNIRAVPEEMELAKEEKCEFLPFLSPRKVIVKGGRIVAMQFVRTEQDETGKWN
Sbjct: 361 IVFRKGFVNIRAVPEEMELAKEEKCEFLPFLSPRKVIVKGGRIVAMQFVRTEQDETGKWN 420
Query: 421 EDEDQMVHLKADVVISAFGSVLSDPKVKEALSPIKFNRWGLPEVDPETMQTSEAWVFAGG 480
EDEDQMVHLKADVVISAFGSVLSDPKVKEALSPIKFNRWGLPEVDPETMQTSEAWVFAGG
Sbjct: 421 EDEDQMVHLKADVVISAFGSVLSDPKVKEALSPIKFNRWGLPEVDPETMQTSEAWVFAGG 480
Query: 481 DVVGLANTTVESVNDGKQASWYIHKYVQSQYGASVSAKPELPLFYTPIDLVDISVEMAGL 540
DVVGLANTTVESVNDGKQASWYIHKYVQSQYGASVSAKPELPLFYTPIDLVDISVEMAGL
Sbjct: 481 DVVGLANTTVESVNDGKQASWYIHKYVQSQYGASVSAKPELPLFYTPIDLVDISVEMAGL 540
Query: 541 KFINPFGLASATPATSTSMIRRAFEAGWGFALTKTFSLDKDIVTNVSPRIIRGTTSGPMY 600
KFINPFGLASATPATSTSMIRRAFEAGWGFALTKTFSLDKDIVTNVSPRIIRGTTSGPMY
Sbjct: 541 KFINPFGLASATPATSTSMIRRAFEAGWGFALTKTFSLDKDIVTNVSPRIIRGTTSGPMY 600
Query: 601 GPGQSSFLNIELISEKTAAYWCQSVTELKADFPDNIVIASIMCSYNKNDWTELAKKSEDS 660
GPGQSSFLNIELISEKTAAYWCQSVTELKADFPDNIVIASIMCSYNKNDWTELAKKSEDS
Sbjct: 601 GPGQSSFLNIELISEKTAAYWCQSVTELKADFPDNIVIASIMCSYNKNDWTELAKKSEDS 660
Query: 661 GADALELNLSCPHGMGERGMGLACGQDPELVRNICRWVRQAVQIPFFAKLTPNVTDIVSI 720
GADALELNLSCPHGMGERGMGLACGQDPELVRNICRWVRQAVQIPFFAKLTPNVTDIVSI
Sbjct: 661 GADALELNLSCPHGMGERGMGLACGQDPELVRNICRWVRQAVQIPFFAKLTPNVTDIVSI 720
Query: 721 ARAAKEGGANGVTATNTVSGLMGLKSDGTPWPAVGIAKRTTYGGVSGTAIRPIALRAVTS 780
ARAAKEGGANGVTATNTVSGLMGLKSDGTPWPAVGIAKRTTYGGVSGTAIRPIALRAVTS
Sbjct: 721 ARAAKEGGANGVTATNTVSGLMGLKSDGTPWPAVGIAKRTTYGGVSGTAIRPIALRAVTS 780
Query: 781 IARALPGFPILATGGIDSAESGLQFLHSGASVLQVCSAIQNQDFTVIEDYCTGLKALLYL 840
IARALPGFPILATGGIDSAESGLQFLHSGASVLQVCSAIQNQDFTVIEDYCTGLKALLYL
Sbjct: 781 IARALPGFPILATGGIDSAESGLQFLHSGASVLQVCSAIQNQDFTVIEDYCTGLKALLYL 840
Query: 841 KSIEELQDWDGQSPATVSHQKGKPVPRIAELMDKKLPSFGPYLEQRKKIIAENKIRLKEQ 900
KSIEELQDWDGQSPATVSHQKGKPVPRIAELMDKKLPSFGPYLEQRKKIIAENKIRLKEQ
Sbjct: 841 KSIEELQDWDGQSPATVSHQKGKPVPRIAELMDKKLPSFGPYLEQRKKIIAENKIRLKEQ 900
Query: 901 NVAFSPLKRNCFIPKRPIPTIKDVIGKALQYLGTFGELSNVEQVVAMIDEEMCINCGKCY 960
NVAFSPLKRNCFIPKRPIPTIKDVIGKALQYLGTFGELSNVEQVVAMIDEEMCINCGKCY
Sbjct: 901 NVAFSPLKRNCFIPKRPIPTIKDVIGKALQYLGTFGELSNVEQVVAMIDEEMCINCGKCY 960
Query: 961 MTCNDSGYQAIQFDPETHLPTITDTCTGCTLCLSVCPIVDCIKMVSRTTPYEPKRGVPLS 1020
MTCNDSGYQAIQFDPETHLPTITDTCTGCTLCLSVCPIVDCIKMVSRTTPYEPKRGVPLS
Sbjct: 961 MTCNDSGYQAIQFDPETHLPTITDTCTGCTLCLSVCPIVDCIKMVSRTTPYEPKRGVPLS 1020
Query: 1021 VNPVC 1025
VNPVC
Sbjct: 1021 VNPVC 1025
>gi|237757300 dihydropyrimidine dehydrogenase isoform 2 [Homo
sapiens]
Length = 173
Score = 340 bits (872), Expect = 4e-93
Identities = 161/161 (100%), Positives = 161/161 (100%)
Query: 1 MAPVLSKDSADIESILALNPRTQTHATLCSTSAKKLDKKHWKRNPDKNCFNCEKLENNFD 60
MAPVLSKDSADIESILALNPRTQTHATLCSTSAKKLDKKHWKRNPDKNCFNCEKLENNFD
Sbjct: 1 MAPVLSKDSADIESILALNPRTQTHATLCSTSAKKLDKKHWKRNPDKNCFNCEKLENNFD 60
Query: 61 DIKHTTLGERGALREAMRCLKCADAPCQKSCPTNLDIKSFITSIANKNYYGAAKMIFSDN 120
DIKHTTLGERGALREAMRCLKCADAPCQKSCPTNLDIKSFITSIANKNYYGAAKMIFSDN
Sbjct: 61 DIKHTTLGERGALREAMRCLKCADAPCQKSCPTNLDIKSFITSIANKNYYGAAKMIFSDN 120
Query: 121 PLGLTCGMVCPTSDLCVGGCNLYATEEGPINIGGLQQFATE 161
PLGLTCGMVCPTSDLCVGGCNLYATEEGPINIGGLQQFATE
Sbjct: 121 PLGLTCGMVCPTSDLCVGGCNLYATEEGPINIGGLQQFATE 161
>gi|45006951 dihydroorotate dehydrogenase precursor [Homo sapiens]
Length = 395
Score = 56.6 bits (135), Expect = 1e-07
Identities = 74/317 (23%), Positives = 135/317 (42%), Gaps = 28/317 (8%)
Query: 533 ISVEMAGLKFINPFGLASATPATSTSMIRRAFEAGWGFALTKTFSLDKDIVTNVSPRIIR 592
+ V + G KF NP G+A+ + + ++ G+GF + + K N PR+ R
Sbjct: 78 LEVRVLGHKFRNPVGIAAGFDKHGEA-VDGLYKMGFGFVEIGSVT-PKPQEGNPRPRVFR 135
Query: 593 GTTSGPMYGPGQSSFLNIELISEKTAAYWCQSVTELKADFPDNIVIASIMCSYNKNDWTE 652
+ + + ++ + A + + P + + S + +
Sbjct: 136 LPEDQAVINRYGFNSHGLSVVEHRLRARQQKQAKLTEDGLPLGVNLGKNKTSVDAAEDYA 195
Query: 653 LAKKSEDSGADALELNLSCPHGMGERGM-GLACGQDPELVRNICR------WVRQAVQIP 705
+ AD L +N+S P+ G R + G A EL R + + +R+ +
Sbjct: 196 EGVRVLGPLADYLVVNVSSPNTAGLRSLQGKA-----ELRRLLTKVLQERDGLRRVHRPA 250
Query: 706 FFAKLTPNVT--DIVSIARAAKEGGANGVTATNT-VSGLMGLKSDGTPWPAVGIAKRTTY 762
K+ P++T D IA KE G +G+ TNT VS GL+ A R+
Sbjct: 251 VLVKIAPDLTSQDKEDIASVVKELGIDGLIVTNTTVSRPAGLQG----------ALRSET 300
Query: 763 GGVSGTAIRPIALRAVTSIARALPG-FPILATGGIDSAESGLQFLHSGASVLQVCSAIQN 821
GG+SG +R ++ + + + G PI+ GG+ S + L+ + +GAS++Q+ +A+
Sbjct: 301 GGLSGKPLRDLSTQTIREMYALTQGRVPIIGVGGVSSGQDALEKIRAGASLVQLYTALTF 360
Query: 822 QDFTVIEDYCTGLKALL 838
V+ L+ALL
Sbjct: 361 WGPPVVGKVKRELEALL 377
>gi|40807366 PP3111 protein [Homo sapiens]
Length = 473
Score = 35.0 bits (79), Expect = 0.36
Identities = 27/130 (20%), Positives = 56/130 (43%), Gaps = 4/130 (3%)
Query: 633 PDNIVIASIMCSYNKNDWTELAKKSEDSGADALELNLSCPHGMGERGMGLACGQDP-ELV 691
P++ + C+ + + + A ++D DA++LNL CP + +RG A QD +L+
Sbjct: 71 PEDRPLIVQFCANDPEVFVQAALLAQDY-CDAIDLNLGCPQMIAKRGHYGAFLQDEWDLL 129
Query: 692 RNICRWVRQAVQIPFFAKLT--PNVTDIVSIARAAKEGGANGVTATNTVSGLMGLKSDGT 749
+ + + + +P K+ P + V A+ ++ G +T G S
Sbjct: 130 QRMILLAHEKLSVPVTCKIRVFPEIDKTVRYAQMLEKAGCQLLTVHGRTKEQKGPLSGAA 189
Query: 750 PWPAVGIAKR 759
W + ++
Sbjct: 190 SWEHIKAVRK 199
>gi|28559080 spermine oxidase isoform 4 [Homo sapiens]
Length = 532
Score = 34.3 bits (77), Expect = 0.62
Identities = 12/37 (32%), Positives = 23/37 (62%)
Query: 189 KIALFGAGPASISCASFLARLGYSDITIFEKQEYVGG 225
++ + GAG A ++ A L G++D+T+ E ++GG
Sbjct: 26 RVVVIGAGLAGLAAAKALLEQGFTDVTVLEASSHIGG 62
>gi|28559078 spermine oxidase isoform 3 [Homo sapiens]
Length = 190
Score = 34.3 bits (77), Expect = 0.62
Identities = 12/37 (32%), Positives = 23/37 (62%)
Query: 189 KIALFGAGPASISCASFLARLGYSDITIFEKQEYVGG 225
++ + GAG A ++ A L G++D+T+ E ++GG
Sbjct: 26 RVVVIGAGLAGLAAAKALLEQGFTDVTVLEASSHIGG 62
>gi|28559076 spermine oxidase isoform 2 [Homo sapiens]
Length = 502
Score = 34.3 bits (77), Expect = 0.62
Identities = 12/37 (32%), Positives = 23/37 (62%)
Query: 189 KIALFGAGPASISCASFLARLGYSDITIFEKQEYVGG 225
++ + GAG A ++ A L G++D+T+ E ++GG
Sbjct: 26 RVVVIGAGLAGLAAAKALLEQGFTDVTVLEASSHIGG 62
>gi|28559074 spermine oxidase isoform 1 [Homo sapiens]
Length = 555
Score = 34.3 bits (77), Expect = 0.62
Identities = 12/37 (32%), Positives = 23/37 (62%)
Query: 189 KIALFGAGPASISCASFLARLGYSDITIFEKQEYVGG 225
++ + GAG A ++ A L G++D+T+ E ++GG
Sbjct: 26 RVVVIGAGLAGLAAAKALLEQGFTDVTVLEASSHIGG 62
>gi|18765727 myogenin [Homo sapiens]
Length = 224
Score = 33.9 bits (76), Expect = 0.81
Identities = 22/78 (28%), Positives = 42/78 (53%), Gaps = 6/78 (7%)
Query: 856 TVSHQKGKPVPRIAELMDKKLPSFGPYLEQRKKIIAENKIRLKEQNVAFSPLKRNCFI-P 914
T H G+ +P ++ +K S +++R+ K RLK+ N AF LKR+ + P
Sbjct: 57 TPEHCPGQCLPWACKVCKRKSVS----VDRRRAATLREKRRLKKVNEAFEALKRSTLLNP 112
Query: 915 KRPIPTIKDVIGKALQYL 932
+ +P + +++ A+QY+
Sbjct: 113 NQRLPKV-EILRSAIQYI 129
>gi|116517330 factor in the germline alpha [Homo sapiens]
Length = 219
Score = 33.1 bits (74), Expect = 1.4
Identities = 32/113 (28%), Positives = 54/113 (47%), Gaps = 18/113 (15%)
Query: 836 ALLYLKSIEELQDWDGQSPATVSHQKGKPVPRIAELMD-KKLPSFGP--------YLEQR 886
ALL E L+D V ++ P+P++A + K+LPS G LE+R
Sbjct: 16 ALLGTPQAEVLED--------VLREQFGPLPQLAAVCRLKRLPSGGYSSTENLQLVLERR 67
Query: 887 KKIIAENKIRLKEQNVAFSPLKRNC-FIPKRPIPTIKDVIGKALQYLGTFGEL 938
+ A+ + R+K N F+ LK F+P+ P+ D++ A +Y+ +L
Sbjct: 68 RVANAKERERIKNLNRGFARLKALVPFLPQSRKPSKVDILKGATEYIQVLSDL 120
>gi|31742496 dihydrouridine synthase 4-like [Homo sapiens]
Length = 317
Score = 33.1 bits (74), Expect = 1.4
Identities = 30/125 (24%), Positives = 58/125 (46%), Gaps = 10/125 (8%)
Query: 618 AAYWCQSVTELKADFPDNIVIASIMCSYNKNDWTEL--AKKSEDSGADALELNLSCPH-- 673
AA + +S+ ++F N ++ + ND L A + A+ +++N CP
Sbjct: 61 AADFVKSIKARDSEFTTNQGDCPLIVQFAANDARLLSDAARIVCPYANGIDINCGCPQRW 120
Query: 674 GMGERGMGLACGQDPELVRNICRWVRQAVQIPFFA-----KLTPNVTDIVSIARAAKEGG 728
M E G G PELV+++ + VR V+ P F+ ++ ++ V + + A+ G
Sbjct: 121 AMAE-GYGACLINKPELVQDMVKQVRNQVETPGFSVSIKIRIHDDLKRTVDLCQKAEATG 179
Query: 729 ANGVT 733
+ +T
Sbjct: 180 VSWIT 184
>gi|108773784 ATP-binding cassette, sub-family E, member 1 [Homo
sapiens]
Length = 599
Score = 32.7 bits (73), Expect = 1.8
Identities = 17/60 (28%), Positives = 30/60 (50%), Gaps = 8/60 (13%)
Query: 945 VAMIDEEMCINCGKCYMTCNDS------GYQAIQFDPETHLPTITDT-CTGCTLCLSVCP 997
+A+++ + C KC C S G I+ P++ + I++T C GC +C+ CP
Sbjct: 8 IAIVNHDKC-KPKKCRQECKKSCPVVRMGKLCIEVTPQSKIAWISETLCIGCGICIKKCP 66
>gi|108773782 ATP-binding cassette, sub-family E, member 1 [Homo
sapiens]
Length = 599
Score = 32.7 bits (73), Expect = 1.8
Identities = 17/60 (28%), Positives = 30/60 (50%), Gaps = 8/60 (13%)
Query: 945 VAMIDEEMCINCGKCYMTCNDS------GYQAIQFDPETHLPTITDT-CTGCTLCLSVCP 997
+A+++ + C KC C S G I+ P++ + I++T C GC +C+ CP
Sbjct: 8 IAIVNHDKC-KPKKCRQECKKSCPVVRMGKLCIEVTPQSKIAWISETLCIGCGICIKKCP 66
>gi|183227703 mitochondrial translation optimization 1 homolog
isoform c [Homo sapiens]
Length = 732
Score = 31.6 bits (70), Expect = 4.0
Identities = 13/30 (43%), Positives = 19/30 (63%)
Query: 335 VIVLGAGDTAFDCATSALRCGARRVFIVFR 364
VIV+G G + AT+A RCG+R + + R
Sbjct: 39 VIVIGGGHAGTEAATAAARCGSRTLLLTHR 68
>gi|19882217 mitochondrial translation optimization 1 homolog
isoform b [Homo sapiens]
Length = 717
Score = 31.6 bits (70), Expect = 4.0
Identities = 13/30 (43%), Positives = 19/30 (63%)
Query: 335 VIVLGAGDTAFDCATSALRCGARRVFIVFR 364
VIV+G G + AT+A RCG+R + + R
Sbjct: 39 VIVIGGGHAGTEAATAAARCGSRTLLLTHR 68
>gi|74024895 mitochondrial translation optimization 1 homolog
isoform a [Homo sapiens]
Length = 692
Score = 31.6 bits (70), Expect = 4.0
Identities = 13/30 (43%), Positives = 19/30 (63%)
Query: 335 VIVLGAGDTAFDCATSALRCGARRVFIVFR 364
VIV+G G + AT+A RCG+R + + R
Sbjct: 39 VIVIGGGHAGTEAATAAARCGSRTLLLTHR 68
>gi|157671929 phosphoinositide-3-kinase, class 2 alpha polypeptide
[Homo sapiens]
Length = 1686
Score = 30.8 bits (68), Expect = 6.8
Identities = 18/49 (36%), Positives = 30/49 (61%), Gaps = 4/49 (8%)
Query: 585 NVSPRIIRGTTSGPMYGPGQSSFLNIELISEKTAAYWCQSVTELKADFP 633
++S + GT+S P G S +E+ +E+ AA+ C+S+T+LK FP
Sbjct: 352 HISQKDPNGTSSLPT---GSSLLQEVEVQNEEMAAF-CRSITKLKTKFP 396
>gi|154354987 hook homolog 2 isoform 2 [Homo sapiens]
Length = 717
Score = 30.8 bits (68), Expect = 6.8
Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 3/41 (7%)
Query: 46 DKNCFNCEKLENNFDDI---KHTTLGERGALREAMRCLKCA 83
+K F C LE ++ + K L ER +LREA L+CA
Sbjct: 384 EKWLFECRNLEEKYESVTKEKERLLAERDSLREANEELRCA 424
>gi|154354985 hook homolog 2 isoform 1 [Homo sapiens]
Length = 719
Score = 30.8 bits (68), Expect = 6.8
Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 3/41 (7%)
Query: 46 DKNCFNCEKLENNFDDI---KHTTLGERGALREAMRCLKCA 83
+K F C LE ++ + K L ER +LREA L+CA
Sbjct: 384 EKWLFECRNLEEKYESVTKEKERLLAERDSLREANEELRCA 424
>gi|229577391 pyridine nucleotide-disulphide oxidoreductase domain 2
[Homo sapiens]
Length = 581
Score = 30.4 bits (67), Expect = 8.9
Identities = 16/46 (34%), Positives = 28/46 (60%), Gaps = 3/46 (6%)
Query: 192 LFGAGPASISCASFLARLGYSDITIFEKQEYVGGLSTSE--IPQFR 235
+ GAG + A++L RLG + +FE++ +GG + +E IP F+
Sbjct: 39 VIGAGHNGLVAAAYLQRLGV-NTAVFERRHVIGGAAVTEEIIPGFK 83
>gi|23097308 spectrin repeat containing, nuclear envelope 1 isoform 2
[Homo sapiens]
Length = 8749
Score = 30.4 bits (67), Expect = 8.9
Identities = 17/54 (31%), Positives = 25/54 (46%)
Query: 799 AESGLQFLHSGASVLQVCSAIQNQDFTVIEDYCTGLKALLYLKSIEELQDWDGQ 852
AE L+ HS A LQ + + +ED L L Y K+ ++Q W G+
Sbjct: 4740 AEEKLKMYHSLAGSLQDSGIVLKRVTIHLEDLAPHLDPLAYEKARHQIQSWQGE 4793
>gi|154277116 spectrin repeat containing, nuclear envelope 1 isoform 1
[Homo sapiens]
Length = 8797
Score = 30.4 bits (67), Expect = 8.9
Identities = 17/54 (31%), Positives = 25/54 (46%)
Query: 799 AESGLQFLHSGASVLQVCSAIQNQDFTVIEDYCTGLKALLYLKSIEELQDWDGQ 852
AE L+ HS A LQ + + +ED L L Y K+ ++Q W G+
Sbjct: 4811 AEEKLKMYHSLAGSLQDSGIVLKRVTIHLEDLAPHLDPLAYEKARHQIQSWQGE 4864
>gi|194018565 zinc finger protein 100 [Homo sapiens]
Length = 542
Score = 30.4 bits (67), Expect = 8.9
Identities = 21/70 (30%), Positives = 32/70 (45%), Gaps = 6/70 (8%)
Query: 22 TQTHATLCSTSAKKL-----DKKHWKRNPDKNCFNCEKLENNFDDIKHTTLGERGALRE- 75
TQ++ C SAK +H R+ K F C+K E +F + H T +R + E
Sbjct: 172 TQSNIFQCDPSAKVFHTFSNSNRHKIRHTRKKPFKCKKCEKSFCMLLHLTQHKRFHITEN 231
Query: 76 AMRCLKCADA 85
+ +C C A
Sbjct: 232 SYQCKDCGKA 241
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.319 0.135 0.408
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 39,715,426
Number of Sequences: 37866
Number of extensions: 1821646
Number of successful extensions: 4217
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 4192
Number of HSP's gapped (non-prelim): 32
length of query: 1025
length of database: 18,247,518
effective HSP length: 112
effective length of query: 913
effective length of database: 14,006,526
effective search space: 12787958238
effective search space used: 12787958238
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 67 (30.4 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.