Guide to the Human Genome
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Name: RAB17 Sequence: fasta or formatted (212aa) NCBI GI: 11967981
Description:

RAB17, member RAS oncogene family

Referenced in:

Rab

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            10.4         22           2
 C cysteine            1.9          4           2
 D aspartate           4.7         10           1
 E glutamate           7.1         15           3
 F phenylalanine       4.7         10           2
 G glycine             6.1         13           1
 H histidine           2.8          6           1
 I isoleucine          1.4          3           1
 K lysine              7.5         16           1
 L leucine            11.8         25           2
 M methionine          1.4          3           1
 N asparagine          2.8          6           1
 P proline             3.3          7           1
 Q glutamine           6.6         14           2
 R arginine            4.7         10           1
 S serine              6.6         14           2
 T threonine           4.7         10           1
 V valine              8.5         18           2
 W tryptophan          0.9          2           1
 Y tyrosine            1.9          4           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   RAB17, member RAS oncogene family 
RAB5C                 0.380   RAB5C, member RAS oncogene family isoform a 
RAB5C                 0.380   RAB5C, member RAS oncogene family isoform b 
RAB5A                 0.370   RAB5A, member RAS oncogene family 
RAB5B                 0.360   RAB5B, member RAS oncogene family 
RAB25                 0.307   RAB25 
RAB21                 0.300   RAB21, member RAS oncogene family 
RAB31                 0.297   RAB31, member RAS oncogene family 
RAB14                 0.295   GTPase Rab14 
RAB2A                 0.292   RAB2A, member RAS oncogene family 
RAB4B                 0.292   ras-related GTP-binding protein 4b 
RAB6B                 0.282   RAB6B, member RAS oncogene family 
RAB2B                 0.280   RAB2B protein isoform 1 
RAB26                 0.280   RAB26, member RAS oncogene family 
RAB4A                 0.277   RAB4A, member RAS oncogene family 
RAB1A                 0.275   RAB1A, member RAS oncogene family isoform 1 
RAB35                 0.275   RAB35, member RAS oncogene family 
RAB6A                 0.270   RAB6A, member RAS oncogene family isoform a 
RAB30                 0.270   RAB30, member RAS oncogene family 
RAB37                 0.270   RAB37, member RAS oncogene family isoform 2 
RAB6A                 0.267   RAB6A, member RAS oncogene family isoform b 
RAB13                 0.267   RAB13, member RAS oncogene family 
RAB1B                 0.267   RAB1B, member RAS oncogene family 
RAB22A                0.267   RAS-related protein RAB-22A 
LOC100131294          0.267   PREDICTED: similar to RAB13, member RAS oncogene fa...
LOC100131294          0.267   PREDICTED: similar to hCG24991 
LOC100131294          0.267   PREDICTED: similar to hCG24991 
RAB37                 0.267   RAB37, member RAS oncogene family isoform 3 
RAB11B                0.264   RAB11B, member RAS oncogene family 
RAB8A                 0.262   mel transforming oncogene 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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