Guide to the Human Genome
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Name: RAB22A Sequence: fasta or formatted (194aa) NCBI GI: 10190714
Description:

RAS-related protein RAB-22A

Referenced in:

Rab

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.2         16           3
 C cysteine            2.1          4           2
 D aspartate           5.7         11           1
 E glutamate           6.7         13           2
 F phenylalanine       4.6          9           1
 G glycine             5.7         11           2
 H histidine           1.5          3           1
 I isoleucine          8.8         17           2
 K lysine              6.7         13           1
 L leucine             6.7         13           2
 M methionine          2.1          4           1
 N asparagine          5.2         10           1
 P proline             4.6          9           2
 Q glutamine           2.6          5           1
 R arginine            6.7         13           2
 S serine              6.7         13           2
 T threonine           5.2         10           1
 V valine              6.2         12           2
 W tryptophan          1.5          3           1
 Y tyrosine            2.6          5           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   RAS-related protein RAB-22A 
RAB31                 0.680   RAB31, member RAS oncogene family 
RAB5A                 0.450   RAB5A, member RAS oncogene family 
RAB5C                 0.442   RAB5C, member RAS oncogene family isoform a 
RAB5C                 0.442   RAB5C, member RAS oncogene family isoform b 
RAB5B                 0.439   RAB5B, member RAS oncogene family 
RAB1A                 0.331   RAB1A, member RAS oncogene family isoform 1 
RAB30                 0.328   RAB30, member RAS oncogene family 
RAB2B                 0.325   RAB2B protein isoform 1 
RAB11B                0.325   RAB11B, member RAS oncogene family 
RAB8A                 0.325   mel transforming oncogene 
RAB6A                 0.325   RAB6A, member RAS oncogene family isoform a 
RAB8B                 0.325   RAB8B, member RAS oncogene family 
RAB1B                 0.322   RAB1B, member RAS oncogene family 
RAB21                 0.322   RAB21, member RAS oncogene family 
RAB2A                 0.317   RAB2A, member RAS oncogene family 
RAB6B                 0.317   RAB6B, member RAS oncogene family 
RAB6A                 0.317   RAB6A, member RAS oncogene family isoform b 
RAB14                 0.317   GTPase Rab14 
RAB11A                0.317   Ras-related protein Rab-11A 
RAB25                 0.309   RAB25 
RAB13                 0.309   RAB13, member RAS oncogene family 
RAB18                 0.309   RAB18, member RAS oncogene family 
LOC100131294          0.304   PREDICTED: similar to RAB13, member RAS oncogene fa...
LOC100131294          0.304   PREDICTED: similar to hCG24991 
LOC100131294          0.304   PREDICTED: similar to hCG24991 
RAB4A                 0.301   RAB4A, member RAS oncogene family 
RAB4B                 0.298   ras-related GTP-binding protein 4b 
LOC150786             0.298   RAB6C-like 
RAB3A                 0.298   RAB3A, member RAS oncogene family 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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