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Search of human proteins with 239756683
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239756683 PREDICTED: hypothetical protein [Homo sapiens]
(247 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239756683 PREDICTED: hypothetical protein [Homo sapiens] 510 e-145
gi|239751180 PREDICTED: hypothetical protein XP_002347740 [Homo ... 291 3e-79
gi|239745668 PREDICTED: hypothetical protein XP_002343538 [Homo ... 226 1e-59
gi|117414137 retinitis pigmentosa 1-like 1 [Homo sapiens] 32 0.39
gi|94536793 tubulin tyrosine ligase-like family, member 7 [Homo ... 32 0.67
gi|148806928 hypothetical protein LOC57482 [Homo sapiens] 31 0.87
gi|38348236 zinc finger protein 497 [Homo sapiens] 31 0.87
gi|22779860 forkhead box L1 [Homo sapiens] 30 1.9
gi|29568103 U1 small nuclear ribonucleoprotein 70 kDa [Homo sapi... 30 2.5
gi|24430139 RNA polymerase II associated protein 1 [Homo sapiens] 30 2.5
gi|24475586 ependymin related protein 1 precursor [Homo sapiens] 29 3.3
gi|239754512 PREDICTED: hypothetical protein [Homo sapiens] 29 4.3
gi|239749073 PREDICTED: hypothetical protein [Homo sapiens] 29 4.3
gi|239743099 PREDICTED: hypothetical protein XP_002342754 [Homo ... 29 4.3
gi|239508751 PREDICTED: hypothetical protein [Homo sapiens] 29 4.3
gi|153946401 BCL2/adenovirus E1B 19kD interacting protein 1 isof... 29 4.3
gi|74048554 cancer susceptibility candidate 5 isoform 2 [Homo sa... 28 5.6
gi|74048514 cancer susceptibility candidate 5 isoform 1 [Homo sa... 28 5.6
gi|239755545 PREDICTED: otogelin isoform 1 [Homo sapiens] 28 5.6
gi|239755543 PREDICTED: otogelin isoform 2 [Homo sapiens] 28 5.6
gi|239749989 PREDICTED: otogelin isoform 2 [Homo sapiens] 28 5.6
gi|239749987 PREDICTED: otogelin isoform 1 [Homo sapiens] 28 5.6
gi|239744300 PREDICTED: otogelin isoform 2 [Homo sapiens] 28 5.6
gi|239744298 PREDICTED: otogelin isoform 1 [Homo sapiens] 28 5.6
gi|41281453 serine/threonine kinase 2 [Homo sapiens] 28 5.6
gi|122937496 WAS/WASL interacting protein family, member 3 [Homo... 28 5.6
gi|119120918 coiled-coil domain containing 64 [Homo sapiens] 28 5.6
gi|153946403 BCL2/adenovirus E1B 19kD interacting protein 1 isof... 28 5.6
gi|119508426 alpha 3 type IX collagen [Homo sapiens] 28 7.4
gi|239740641 PREDICTED: hypothetical protein [Homo sapiens] 28 9.6
>gi|239756683 PREDICTED: hypothetical protein [Homo sapiens]
Length = 247
Score = 510 bits (1313), Expect = e-145
Identities = 247/247 (100%), Positives = 247/247 (100%)
Query: 1 MEQNRKDPPGPETTSLAPRSPLPQRSPCHRGLVAPELLLRVECPGLEALGCSSLNPQALL 60
MEQNRKDPPGPETTSLAPRSPLPQRSPCHRGLVAPELLLRVECPGLEALGCSSLNPQALL
Sbjct: 1 MEQNRKDPPGPETTSLAPRSPLPQRSPCHRGLVAPELLLRVECPGLEALGCSSLNPQALL 60
Query: 61 ALDCFPPSILFLNACFFPPFVHLHKSSCVYVRGALAAVLKFPSGGRQNEGDSENVSAALA 120
ALDCFPPSILFLNACFFPPFVHLHKSSCVYVRGALAAVLKFPSGGRQNEGDSENVSAALA
Sbjct: 61 ALDCFPPSILFLNACFFPPFVHLHKSSCVYVRGALAAVLKFPSGGRQNEGDSENVSAALA 120
Query: 121 LGEEARGPPSPLNPLQGISQGLGPQETRADLNLWAWNKFLVPGEEIWPSERVSLERTHHG 180
LGEEARGPPSPLNPLQGISQGLGPQETRADLNLWAWNKFLVPGEEIWPSERVSLERTHHG
Sbjct: 121 LGEEARGPPSPLNPLQGISQGLGPQETRADLNLWAWNKFLVPGEEIWPSERVSLERTHHG 180
Query: 181 QKQRLLQKGEERADQRLQSREAAELGGGDLHGSVQAPDSGVDESSHDCVQDEGEDLGEEK 240
QKQRLLQKGEERADQRLQSREAAELGGGDLHGSVQAPDSGVDESSHDCVQDEGEDLGEEK
Sbjct: 181 QKQRLLQKGEERADQRLQSREAAELGGGDLHGSVQAPDSGVDESSHDCVQDEGEDLGEEK 240
Query: 241 ATVGIRP 247
ATVGIRP
Sbjct: 241 ATVGIRP 247
>gi|239751180 PREDICTED: hypothetical protein XP_002347740 [Homo
sapiens]
Length = 331
Score = 291 bits (746), Expect = 3e-79
Identities = 143/149 (95%), Positives = 144/149 (96%), Gaps = 2/149 (1%)
Query: 1 MEQNRKDPPGPETTSLAPRSPLPQRSPCHRGLVAPELLLRVECPGLEALGCSSLNPQALL 60
MEQNRKDPPGPETTSLAPRSPLPQRSPCHRGLVAPELLLRVECPGLEALGCSSLNPQALL
Sbjct: 1 MEQNRKDPPGPETTSLAPRSPLPQRSPCHRGLVAPELLLRVECPGLEALGCSSLNPQALL 60
Query: 61 ALDCFPPSILFLNACFFPPFVHLHKSSCVYVRGALAAVLKFPSGGRQNEGDSENVSAALA 120
ALDCFPPSILFLNACFFPPFVHLHKSSCVYVRGALAAVLKFPSGGRQNEGDSENVSAALA
Sbjct: 61 ALDCFPPSILFLNACFFPPFVHLHKSSCVYVRGALAAVLKFPSGGRQNEGDSENVSAALA 120
Query: 121 LGEEARGPPSPLNPLQGISQGLGPQETRA 149
LGEEARGPPSPLNPLQGISQ PQ +A
Sbjct: 121 LGEEARGPPSPLNPLQGISQ--APQRPQA 147
Score = 226 bits (577), Expect = 1e-59
Identities = 110/117 (94%), Positives = 110/117 (94%)
Query: 131 PLNPLQGISQGLGPQETRADLNLWAWNKFLVPGEEIWPSERVSLERTHHGQKQRLLQKGE 190
PL QGLGPQETRADLNLWAWNKFLVPGEEIWPSERVSLERTHHGQKQRLLQKGE
Sbjct: 215 PLQLAPVADQGLGPQETRADLNLWAWNKFLVPGEEIWPSERVSLERTHHGQKQRLLQKGE 274
Query: 191 ERADQRLQSREAAELGGGDLHGSVQAPDSGVDESSHDCVQDEGEDLGEEKATVGIRP 247
ERADQRLQSREAAELGGGDLHGSVQAPDSGVDESSHDCVQDEGEDLGEEKATVGIRP
Sbjct: 275 ERADQRLQSREAAELGGGDLHGSVQAPDSGVDESSHDCVQDEGEDLGEEKATVGIRP 331
>gi|239745668 PREDICTED: hypothetical protein XP_002343538 [Homo
sapiens]
Length = 305
Score = 226 bits (577), Expect = 1e-59
Identities = 110/117 (94%), Positives = 110/117 (94%)
Query: 131 PLNPLQGISQGLGPQETRADLNLWAWNKFLVPGEEIWPSERVSLERTHHGQKQRLLQKGE 190
PL QGLGPQETRADLNLWAWNKFLVPGEEIWPSERVSLERTHHGQKQRLLQKGE
Sbjct: 189 PLQLAPVADQGLGPQETRADLNLWAWNKFLVPGEEIWPSERVSLERTHHGQKQRLLQKGE 248
Query: 191 ERADQRLQSREAAELGGGDLHGSVQAPDSGVDESSHDCVQDEGEDLGEEKATVGIRP 247
ERADQRLQSREAAELGGGDLHGSVQAPDSGVDESSHDCVQDEGEDLGEEKATVGIRP
Sbjct: 249 ERADQRLQSREAAELGGGDLHGSVQAPDSGVDESSHDCVQDEGEDLGEEKATVGIRP 305
Score = 181 bits (460), Expect = 4e-46
Identities = 90/96 (93%), Positives = 91/96 (94%), Gaps = 2/96 (2%)
Query: 54 LNPQALLALDCFPPSILFLNACFFPPFVHLHKSSCVYVRGALAAVLKFPSGGRQNEGDSE 113
LNPQALLALDCFPPSILFLNACFFPPFVHLHKSSCVYVRGALAAVLKFPSGGRQNEGDSE
Sbjct: 28 LNPQALLALDCFPPSILFLNACFFPPFVHLHKSSCVYVRGALAAVLKFPSGGRQNEGDSE 87
Query: 114 NVSAALALGEEARGPPSPLNPLQGISQGLGPQETRA 149
NVSAALALGEEARGPPSPLNPLQGISQ PQ +A
Sbjct: 88 NVSAALALGEEARGPPSPLNPLQGISQ--APQRPQA 121
>gi|117414137 retinitis pigmentosa 1-like 1 [Homo sapiens]
Length = 2400
Score = 32.3 bits (72), Expect = 0.39
Identities = 41/141 (29%), Positives = 58/141 (41%), Gaps = 15/141 (10%)
Query: 5 RKDPPGPETTSLAPRSPLP--QRSPCHRGLVAPELLLRVECPGLEALGCSSLNPQALLAL 62
RKD P +S+ + P P +R C G V P +A G +L P + +L
Sbjct: 671 RKDTHSPLDSSVTKQVPRPPERRRACQDGSV-PRYSGSSSSTRTQASG--NLRPPSSGSL 727
Query: 63 DCFPPSILFLNACFFPPFVHLHKSSCVYVRGALAAVLKFPSGGRQ--------NEGDSEN 114
+L ++ P VH S V A +A +G R + DS +
Sbjct: 728 PS--QDLLGTSSATVTPAVHSDFVSGVSPHNAPSAGWAGDAGSRTCSPAPIPPHTSDSCS 785
Query: 115 VSAALALGEEARGPPSPLNPL 135
S A +LGEEAR P P +PL
Sbjct: 786 KSGAASLGEEARDTPQPSSPL 806
>gi|94536793 tubulin tyrosine ligase-like family, member 7 [Homo
sapiens]
Length = 887
Score = 31.6 bits (70), Expect = 0.67
Identities = 19/63 (30%), Positives = 31/63 (49%), Gaps = 2/63 (3%)
Query: 140 QGLGPQETRADLNLWAWN--KFLVPGEEIWPSERVSLERTHHGQKQRLLQKGEERADQRL 197
+ L Q+ A L+ N K L+PG W +R LER K+RL Q ++ + +
Sbjct: 387 RNLAKQKAEAQRRLYGQNSIKRLLPGSSDWEQQRHQLERRKEELKERLAQVRKQISREEH 446
Query: 198 QSR 200
++R
Sbjct: 447 ENR 449
>gi|148806928 hypothetical protein LOC57482 [Homo sapiens]
Length = 1233
Score = 31.2 bits (69), Expect = 0.87
Identities = 22/75 (29%), Positives = 35/75 (46%), Gaps = 4/75 (5%)
Query: 170 ERVSLERTHHGQKQRLLQKGEERADQRLQSREAAELGGGD----LHGSVQAPDSGVDESS 225
ER LE +++R ++ E R + L+ +E E G + VQ P ++E+
Sbjct: 331 ERRRLEEDARLEERRRQEEEEGRCAEELKRQEEEEAEGWEELEQQEAEVQGPPEALEETG 390
Query: 226 HDCVQDEGEDLGEEK 240
E EDLGEE+
Sbjct: 391 EGRRGAEEEDLGEEE 405
>gi|38348236 zinc finger protein 497 [Homo sapiens]
Length = 498
Score = 31.2 bits (69), Expect = 0.87
Identities = 15/41 (36%), Positives = 18/41 (43%)
Query: 110 GDSENVSAALALGEEARGPPSPLNPLQGISQGLGPQETRAD 150
GD + A L +E GP L P G G GP+ AD
Sbjct: 52 GDGQRQQATLGAADEQGGPGRELGPADGGRDGAGPRSEPAD 92
>gi|22779860 forkhead box L1 [Homo sapiens]
Length = 345
Score = 30.0 bits (66), Expect = 1.9
Identities = 19/43 (44%), Positives = 25/43 (58%), Gaps = 5/43 (11%)
Query: 97 AVLKFPSGGRQNE--GDSENVSAALALGEEAR---GPPSPLNP 134
A L +P NE GD+ +AA+A+G+ AR GP SPL P
Sbjct: 204 APLHWPGTASPNEDAGDAAQGAAAVAVGQAARTGDGPGSPLRP 246
>gi|29568103 U1 small nuclear ribonucleoprotein 70 kDa [Homo
sapiens]
Length = 437
Score = 29.6 bits (65), Expect = 2.5
Identities = 17/59 (28%), Positives = 29/59 (49%)
Query: 182 KQRLLQKGEERADQRLQSREAAELGGGDLHGSVQAPDSGVDESSHDCVQDEGEDLGEEK 240
++R + ERA + + +E GGGD+ +A D+ D+ + +G D EEK
Sbjct: 288 RKRRSSRSRERARRERERKEELRGGGGDMAEPSEAGDAPPDDGPPGELGPDGPDGPEEK 346
>gi|24430139 RNA polymerase II associated protein 1 [Homo sapiens]
Length = 1393
Score = 29.6 bits (65), Expect = 2.5
Identities = 23/65 (35%), Positives = 27/65 (41%), Gaps = 6/65 (9%)
Query: 44 PGLEALGCSSLNPQALLALDCFPPSILFLNACFFPPFVHLHKSSCVYVRGALAAVLKFPS 103
P L +LGCS P+ LA P L +HK C G LAA+L P
Sbjct: 868 PSLVSLGCSGGCPRLSLAGSASPFPFLTALLSLLNTLAQIHKGLC----GQLAAILAAP- 922
Query: 104 GGRQN 108
G QN
Sbjct: 923 -GLQN 926
>gi|24475586 ependymin related protein 1 precursor [Homo sapiens]
Length = 344
Score = 29.3 bits (64), Expect = 3.3
Identities = 21/73 (28%), Positives = 30/73 (41%), Gaps = 9/73 (12%)
Query: 136 QGISQGLGPQETRADLNLWAWNKFLVPGEEIWPSERVSLERTHHGQKQRLLQKGEERADQ 195
Q ++ G GP + W+ + LVP R QK++ KG+E
Sbjct: 32 QAVAAGSGPGRNSSRAIHWSLPRALVPATGT---------RASGSQKRQRPPKGQEALWS 82
Query: 196 RLQSREAAELGGG 208
R SR +AE GG
Sbjct: 83 RPHSRHSAERAGG 95
>gi|239754512 PREDICTED: hypothetical protein [Homo sapiens]
Length = 556
Score = 28.9 bits (63), Expect = 4.3
Identities = 15/44 (34%), Positives = 17/44 (38%), Gaps = 10/44 (22%)
Query: 2 EQNRKDPPGPETTSLA----------PRSPLPQRSPCHRGLVAP 35
+Q R PPGP P P P+R PCHR P
Sbjct: 431 DQGRDAPPGPTPARRGLPRPPPPPPPPLPPPPRREPCHRAWPGP 474
>gi|239749073 PREDICTED: hypothetical protein [Homo sapiens]
Length = 884
Score = 28.9 bits (63), Expect = 4.3
Identities = 15/44 (34%), Positives = 17/44 (38%), Gaps = 10/44 (22%)
Query: 2 EQNRKDPPGPETTSLA----------PRSPLPQRSPCHRGLVAP 35
+Q R PPGP P P P+R PCHR P
Sbjct: 759 DQGRDAPPGPTPARRGLPRPPPPPPPPLPPPPRREPCHRAWPGP 802
>gi|239743099 PREDICTED: hypothetical protein XP_002342754 [Homo
sapiens]
Length = 884
Score = 28.9 bits (63), Expect = 4.3
Identities = 15/44 (34%), Positives = 17/44 (38%), Gaps = 10/44 (22%)
Query: 2 EQNRKDPPGPETTSLA----------PRSPLPQRSPCHRGLVAP 35
+Q R PPGP P P P+R PCHR P
Sbjct: 759 DQGRDAPPGPTPARRGLPRPPPPPPPPLPPPPRREPCHRAWPGP 802
>gi|239508751 PREDICTED: hypothetical protein [Homo sapiens]
Length = 884
Score = 28.9 bits (63), Expect = 4.3
Identities = 15/44 (34%), Positives = 17/44 (38%), Gaps = 10/44 (22%)
Query: 2 EQNRKDPPGPETTSLA----------PRSPLPQRSPCHRGLVAP 35
+Q R PPGP P P P+R PCHR P
Sbjct: 759 DQGRDAPPGPTPARRGLPRPPPPPPPPLPPPPRREPCHRAWPGP 802
>gi|153946401 BCL2/adenovirus E1B 19kD interacting protein 1 isoform
BNIP1 [Homo sapiens]
Length = 228
Score = 28.9 bits (63), Expect = 4.3
Identities = 19/66 (28%), Positives = 29/66 (43%)
Query: 135 LQGISQGLGPQETRADLNLWAWNKFLVPGEEIWPSERVSLERTHHGQKQRLLQKGEERAD 194
+Q I GP +LN KF I E+++ E+ +KQ LLQ+ E
Sbjct: 27 IQDIRDCSGPLSALTELNTKVKEKFQQLRHRIQDLEQLAKEQDKESEKQLLLQEVENHKK 86
Query: 195 QRLQSR 200
Q L ++
Sbjct: 87 QMLSNQ 92
>gi|74048554 cancer susceptibility candidate 5 isoform 2 [Homo
sapiens]
Length = 2316
Score = 28.5 bits (62), Expect = 5.6
Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Query: 2 EQNRKDPPGPETTSLAPRSPLPQR-SPCHRGLVAPELLLRVEC 43
E+N+K G ETTSL P++ + C G+ P L + C
Sbjct: 1621 EENKKSHNGAETTSLPPKTVFKDKVRRCSLGIFLPRLPNKRNC 1663
>gi|74048514 cancer susceptibility candidate 5 isoform 1 [Homo
sapiens]
Length = 2342
Score = 28.5 bits (62), Expect = 5.6
Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Query: 2 EQNRKDPPGPETTSLAPRSPLPQR-SPCHRGLVAPELLLRVEC 43
E+N+K G ETTSL P++ + C G+ P L + C
Sbjct: 1647 EENKKSHNGAETTSLPPKTVFKDKVRRCSLGIFLPRLPNKRNC 1689
>gi|239755545 PREDICTED: otogelin isoform 1 [Homo sapiens]
Length = 2852
Score = 28.5 bits (62), Expect = 5.6
Identities = 14/26 (53%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
Query: 2 EQNRKDPPGPETTSLAPRSPLPQRSP 27
EQ PPGP T+SL PR P Q++P
Sbjct: 243 EQAPNQPPGPTTSSL-PRPPCLQQNP 267
>gi|239755543 PREDICTED: otogelin isoform 2 [Homo sapiens]
Length = 2924
Score = 28.5 bits (62), Expect = 5.6
Identities = 14/26 (53%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
Query: 2 EQNRKDPPGPETTSLAPRSPLPQRSP 27
EQ PPGP T+SL PR P Q++P
Sbjct: 315 EQAPNQPPGPTTSSL-PRPPCLQQNP 339
>gi|239749989 PREDICTED: otogelin isoform 2 [Homo sapiens]
Length = 2852
Score = 28.5 bits (62), Expect = 5.6
Identities = 14/26 (53%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
Query: 2 EQNRKDPPGPETTSLAPRSPLPQRSP 27
EQ PPGP T+SL PR P Q++P
Sbjct: 243 EQAPNQPPGPTTSSL-PRPPCLQQNP 267
>gi|239749987 PREDICTED: otogelin isoform 1 [Homo sapiens]
Length = 2924
Score = 28.5 bits (62), Expect = 5.6
Identities = 14/26 (53%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
Query: 2 EQNRKDPPGPETTSLAPRSPLPQRSP 27
EQ PPGP T+SL PR P Q++P
Sbjct: 315 EQAPNQPPGPTTSSL-PRPPCLQQNP 339
>gi|239744300 PREDICTED: otogelin isoform 2 [Homo sapiens]
Length = 2852
Score = 28.5 bits (62), Expect = 5.6
Identities = 14/26 (53%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
Query: 2 EQNRKDPPGPETTSLAPRSPLPQRSP 27
EQ PPGP T+SL PR P Q++P
Sbjct: 243 EQAPNQPPGPTTSSL-PRPPCLQQNP 267
>gi|239744298 PREDICTED: otogelin isoform 1 [Homo sapiens]
Length = 2924
Score = 28.5 bits (62), Expect = 5.6
Identities = 14/26 (53%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
Query: 2 EQNRKDPPGPETTSLAPRSPLPQRSP 27
EQ PPGP T+SL PR P Q++P
Sbjct: 315 EQAPNQPPGPTTSSL-PRPPCLQQNP 339
>gi|41281453 serine/threonine kinase 2 [Homo sapiens]
Length = 1235
Score = 28.5 bits (62), Expect = 5.6
Identities = 19/67 (28%), Positives = 32/67 (47%), Gaps = 4/67 (5%)
Query: 181 QKQRLLQ----KGEERADQRLQSREAAELGGGDLHGSVQAPDSGVDESSHDCVQDEGEDL 236
+KQ++ + K EE D LQ+ + G+ ++QA DS V + D + GED
Sbjct: 476 EKQQMFENKLIKSEEIKDTILQTVDLVSQETGEKEANIQAVDSEVGLTKEDTQEKLGEDD 535
Query: 237 GEEKATV 243
+K +
Sbjct: 536 KTQKDVI 542
>gi|122937496 WAS/WASL interacting protein family, member 3 [Homo
sapiens]
Length = 483
Score = 28.5 bits (62), Expect = 5.6
Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
Query: 8 PPGPETTSLAPRSPLPQRSPCHRGLVAPELLLRVEC--PGLEA 48
PP P + L+ ++ PQ +P H + P L L C PGL+A
Sbjct: 235 PPLPPASVLSDKAVKPQLAPLHLPPIPPPLPLLPPCGYPGLKA 277
>gi|119120918 coiled-coil domain containing 64 [Homo sapiens]
Length = 573
Score = 28.5 bits (62), Expect = 5.6
Identities = 20/53 (37%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
Query: 94 ALAAVLKFPSGGRQNEGDSENVSAALALGEEARGP-PSPLNPLQGISQGLGPQ 145
A AA L FP G + E E A LA GE P P +++G GPQ
Sbjct: 38 AAAAALIFPGGSGELELALEEELALLAAGERPSDPGEHPQAEPGSLAEGAGPQ 90
>gi|153946403 BCL2/adenovirus E1B 19kD interacting protein 1 isoform
BNIP1-a [Homo sapiens]
Length = 194
Score = 28.5 bits (62), Expect = 5.6
Identities = 19/64 (29%), Positives = 28/64 (43%)
Query: 135 LQGISQGLGPQETRADLNLWAWNKFLVPGEEIWPSERVSLERTHHGQKQRLLQKGEERAD 194
+Q I GP +LN KF I E+++ E+ +KQ LLQ+ E
Sbjct: 27 IQDIRDCSGPLSALTELNTKVKEKFQQLRHRIQDLEQLAKEQDKESEKQLLLQEVENHKK 86
Query: 195 QRLQ 198
Q L+
Sbjct: 87 QMLR 90
>gi|119508426 alpha 3 type IX collagen [Homo sapiens]
Length = 684
Score = 28.1 bits (61), Expect = 7.4
Identities = 15/41 (36%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
Query: 6 KDPPGPETTSLAPRSPLPQRSPCHRGLVAPELLLRVECPGL 46
+ PPGP P P P P H G V PE ++CP +
Sbjct: 138 RGPPGPSGLPGLPGPPGPPGPPGHPG-VLPEGATDLQCPSI 177
>gi|239740641 PREDICTED: hypothetical protein [Homo sapiens]
Length = 107
Score = 27.7 bits (60), Expect = 9.6
Identities = 15/45 (33%), Positives = 19/45 (42%)
Query: 102 PSGGRQNEGDSENVSAALALGEEARGPPSPLNPLQGISQGLGPQE 146
PS R + G + LA PP P G+ QG GP+E
Sbjct: 63 PSSRRGSPGPAPPPGGPLASPRRGGFPPDPALTRPGLGQGQGPRE 107
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.314 0.135 0.414
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,977,054
Number of Sequences: 37866
Number of extensions: 625021
Number of successful extensions: 1919
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 1890
Number of HSP's gapped (non-prelim): 48
length of query: 247
length of database: 18,247,518
effective HSP length: 100
effective length of query: 147
effective length of database: 14,460,918
effective search space: 2125754946
effective search space used: 2125754946
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.