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Search of human proteins with 239756362
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239756362 PREDICTED: hypothetical protein [Homo sapiens]
(111 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239756362 PREDICTED: hypothetical protein [Homo sapiens] 231 1e-61
gi|239750887 PREDICTED: hypothetical protein [Homo sapiens] 229 4e-61
gi|239745250 PREDICTED: hypothetical protein [Homo sapiens] 226 4e-60
gi|48255900 SWI/SNF-related matrix-associated actin-dependent re... 29 0.71
gi|48255898 SWI/SNF-related matrix-associated actin-dependent re... 29 0.71
gi|55953110 retinoblastoma protein-binding zinc finger protein i... 28 1.6
gi|20336260 retinoblastoma protein-binding zinc finger protein i... 28 1.6
gi|20336258 retinoblastoma protein-binding zinc finger protein i... 28 1.6
gi|169180010 PREDICTED: hypothetical protein [Homo sapiens] 28 2.1
gi|169178954 PREDICTED: hypothetical protein [Homo sapiens] 28 2.1
gi|169176365 PREDICTED: hypothetical protein [Homo sapiens] 28 2.1
gi|212549553 interleukin enhancer binding factor 3 isoform d [Ho... 28 2.1
gi|24234750 interleukin enhancer binding factor 3 isoform a [Hom... 28 2.1
gi|239757083 PREDICTED: similar to hCG1996962 [Homo sapiens] 27 2.7
gi|169162301 PREDICTED: hypothetical protein [Homo sapiens] 27 2.7
gi|169161809 PREDICTED: hypothetical protein [Homo sapiens] 27 2.7
gi|169162579 PREDICTED: hypothetical protein [Homo sapiens] 27 2.7
gi|32490567 relaxin 3 receptor 2 [Homo sapiens] 27 2.7
gi|163644283 proteasome (prosome, macropain) activator subunit 4... 27 2.7
gi|109389365 glucose-6-phosphate dehydrogenase isoform a [Homo s... 27 3.5
gi|26051240 tumor necrosis factor, alpha-induced protein 2 [Homo... 27 3.5
gi|221219020 NYD-SP11 protein [Homo sapiens] 27 4.6
gi|239757942 PREDICTED: hypothetical protein XP_002346387 [Homo ... 27 4.6
gi|239754418 PREDICTED: hypothetical protein [Homo sapiens] 27 4.6
gi|239748946 PREDICTED: hypothetical protein XP_002346864 [Homo ... 27 4.6
gi|239742968 PREDICTED: hypothetical protein XP_002342707 [Homo ... 27 4.6
gi|33354279 hypothetical protein LOC55425 [Homo sapiens] 27 4.6
gi|104294888 fms-related tyrosine kinase 4 isoform 1 precursor [... 26 6.0
gi|239751590 PREDICTED: hypothetical protein XP_002347921 [Homo ... 26 6.0
gi|239749667 PREDICTED: hypothetical protein XP_002347127 [Homo ... 26 6.0
>gi|239756362 PREDICTED: hypothetical protein [Homo sapiens]
Length = 111
Score = 231 bits (588), Expect = 1e-61
Identities = 111/111 (100%), Positives = 111/111 (100%)
Query: 1 MAEPGCSTLTVRLGRRGSGSVRGAELRGSSRAGRVCQRPLLPVSVGIFQKAEHGGQVKPG 60
MAEPGCSTLTVRLGRRGSGSVRGAELRGSSRAGRVCQRPLLPVSVGIFQKAEHGGQVKPG
Sbjct: 1 MAEPGCSTLTVRLGRRGSGSVRGAELRGSSRAGRVCQRPLLPVSVGIFQKAEHGGQVKPG 60
Query: 61 RPAQWQQLWPEGHQWTQRPRERSRGQQETANAEAQSDQDTVLVHILGGADV 111
RPAQWQQLWPEGHQWTQRPRERSRGQQETANAEAQSDQDTVLVHILGGADV
Sbjct: 61 RPAQWQQLWPEGHQWTQRPRERSRGQQETANAEAQSDQDTVLVHILGGADV 111
>gi|239750887 PREDICTED: hypothetical protein [Homo sapiens]
Length = 111
Score = 229 bits (584), Expect = 4e-61
Identities = 110/111 (99%), Positives = 110/111 (99%)
Query: 1 MAEPGCSTLTVRLGRRGSGSVRGAELRGSSRAGRVCQRPLLPVSVGIFQKAEHGGQVKPG 60
MAEPGCSTLTVRLGRRGSGSVRGAELRGS RAGRVCQRPLLPVSVGIFQKAEHGGQVKPG
Sbjct: 1 MAEPGCSTLTVRLGRRGSGSVRGAELRGSGRAGRVCQRPLLPVSVGIFQKAEHGGQVKPG 60
Query: 61 RPAQWQQLWPEGHQWTQRPRERSRGQQETANAEAQSDQDTVLVHILGGADV 111
RPAQWQQLWPEGHQWTQRPRERSRGQQETANAEAQSDQDTVLVHILGGADV
Sbjct: 61 RPAQWQQLWPEGHQWTQRPRERSRGQQETANAEAQSDQDTVLVHILGGADV 111
>gi|239745250 PREDICTED: hypothetical protein [Homo sapiens]
Length = 134
Score = 226 bits (575), Expect = 4e-60
Identities = 108/109 (99%), Positives = 108/109 (99%)
Query: 3 EPGCSTLTVRLGRRGSGSVRGAELRGSSRAGRVCQRPLLPVSVGIFQKAEHGGQVKPGRP 62
EPGCSTLTVRLGRRGSGSVRGAELRGS RAGRVCQRPLLPVSVGIFQKAEHGGQVKPGRP
Sbjct: 26 EPGCSTLTVRLGRRGSGSVRGAELRGSGRAGRVCQRPLLPVSVGIFQKAEHGGQVKPGRP 85
Query: 63 AQWQQLWPEGHQWTQRPRERSRGQQETANAEAQSDQDTVLVHILGGADV 111
AQWQQLWPEGHQWTQRPRERSRGQQETANAEAQSDQDTVLVHILGGADV
Sbjct: 86 AQWQQLWPEGHQWTQRPRERSRGQQETANAEAQSDQDTVLVHILGGADV 134
>gi|48255900 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a2 isoform a [Homo sapiens]
Length = 1590
Score = 29.3 bits (64), Expect = 0.71
Identities = 16/56 (28%), Positives = 26/56 (46%)
Query: 49 QKAEHGGQVKPGRPAQWQQLWPEGHQWTQRPRERSRGQQETANAEAQSDQDTVLVH 104
Q A G + PG Q QQ + Q Q+ +++ + QQ+ + Q Q LV+
Sbjct: 203 QLAVQGKRTLPGLQQQQQQQQQQQQQQQQQQQQQQQPQQQPPQPQTQQQQQPALVN 258
>gi|48255898 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a2 isoform b [Homo sapiens]
Length = 1572
Score = 29.3 bits (64), Expect = 0.71
Identities = 16/56 (28%), Positives = 26/56 (46%)
Query: 49 QKAEHGGQVKPGRPAQWQQLWPEGHQWTQRPRERSRGQQETANAEAQSDQDTVLVH 104
Q A G + PG Q QQ + Q Q+ +++ + QQ+ + Q Q LV+
Sbjct: 203 QLAVQGKRTLPGLQQQQQQQQQQQQQQQQQQQQQQQPQQQPPQPQTQQQQQPALVN 258
>gi|55953110 retinoblastoma protein-binding zinc finger protein
isoform c [Homo sapiens]
Length = 1481
Score = 28.1 bits (61), Expect = 1.6
Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 4/44 (9%)
Query: 25 ELRGSSRAGRVCQRPLLPVSVGIFQKAEHGGQVKPGRPAQWQQL 68
E SS VC + L +S G+ QKAE G+ P QW+ +
Sbjct: 607 EWTASSAFSSVCNQQPLDLSSGVKQKAEGTGKT----PVQWESV 646
>gi|20336260 retinoblastoma protein-binding zinc finger protein
isoform b [Homo sapiens]
Length = 1682
Score = 28.1 bits (61), Expect = 1.6
Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 4/44 (9%)
Query: 25 ELRGSSRAGRVCQRPLLPVSVGIFQKAEHGGQVKPGRPAQWQQL 68
E SS VC + L +S G+ QKAE G+ P QW+ +
Sbjct: 808 EWTASSAFSSVCNQQPLDLSSGVKQKAEGTGKT----PVQWESV 847
>gi|20336258 retinoblastoma protein-binding zinc finger protein
isoform a [Homo sapiens]
Length = 1718
Score = 28.1 bits (61), Expect = 1.6
Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 4/44 (9%)
Query: 25 ELRGSSRAGRVCQRPLLPVSVGIFQKAEHGGQVKPGRPAQWQQL 68
E SS VC + L +S G+ QKAE G+ P QW+ +
Sbjct: 808 EWTASSAFSSVCNQQPLDLSSGVKQKAEGTGKT----PVQWESV 847
>gi|169180010 PREDICTED: hypothetical protein [Homo sapiens]
Length = 219
Score = 27.7 bits (60), Expect = 2.1
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 78 RPRERSRGQQETANAEAQSDQDTVLVHI 105
+PRE S+G Q AN D D L+++
Sbjct: 150 KPREESQGAQHRANLRVYRDADPFLINV 177
>gi|169178954 PREDICTED: hypothetical protein [Homo sapiens]
Length = 219
Score = 27.7 bits (60), Expect = 2.1
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 78 RPRERSRGQQETANAEAQSDQDTVLVHI 105
+PRE S+G Q AN D D L+++
Sbjct: 150 KPREESQGAQHRANLRVYRDADPFLINV 177
>gi|169176365 PREDICTED: hypothetical protein [Homo sapiens]
Length = 219
Score = 27.7 bits (60), Expect = 2.1
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 78 RPRERSRGQQETANAEAQSDQDTVLVHI 105
+PRE S+G Q AN D D L+++
Sbjct: 150 KPREESQGAQHRANLRVYRDADPFLINV 177
>gi|212549553 interleukin enhancer binding factor 3 isoform d [Homo
sapiens]
Length = 898
Score = 27.7 bits (60), Expect = 2.1
Identities = 19/63 (30%), Positives = 26/63 (41%), Gaps = 2/63 (3%)
Query: 17 GSGSVRGAELRGSSRAGRVCQRPLLPVSVGIFQKAEHGGQVKPGRPAQWQQLWPEGHQWT 76
G G G+ GS G P+ P G +K HGGQ KP + +Q + +
Sbjct: 707 GGGGGGGSSGYGSYYQGDNYNSPVPPKHAG--KKQPHGGQQKPSYGSGYQSHQGQQQSYN 764
Query: 77 QRP 79
Q P
Sbjct: 765 QSP 767
>gi|24234750 interleukin enhancer binding factor 3 isoform a [Homo
sapiens]
Length = 894
Score = 27.7 bits (60), Expect = 2.1
Identities = 19/63 (30%), Positives = 26/63 (41%), Gaps = 2/63 (3%)
Query: 17 GSGSVRGAELRGSSRAGRVCQRPLLPVSVGIFQKAEHGGQVKPGRPAQWQQLWPEGHQWT 76
G G G+ GS G P+ P G +K HGGQ KP + +Q + +
Sbjct: 703 GGGGGGGSSGYGSYYQGDNYNSPVPPKHAG--KKQPHGGQQKPSYGSGYQSHQGQQQSYN 760
Query: 77 QRP 79
Q P
Sbjct: 761 QSP 763
>gi|239757083 PREDICTED: similar to hCG1996962 [Homo sapiens]
Length = 192
Score = 27.3 bits (59), Expect = 2.7
Identities = 21/85 (24%), Positives = 34/85 (40%), Gaps = 11/85 (12%)
Query: 1 MAEPGCSTLTVRLGRRGSGSVRGAELRGSSRAGRVCQRPL-----------LPVSVGIFQ 49
+A P T R G G+ ++L + A +RP P + G F+
Sbjct: 103 VAPPRVPPRTPRRGSLGAAVFSSSDLTFDAEAQGQVRRPRPAQAVGPSGARRPEAPGWFR 162
Query: 50 KAEHGGQVKPGRPAQWQQLWPEGHQ 74
K++ G+ G +QW Q P+ Q
Sbjct: 163 KSDRSGRAGTGAWSQWPQANPDEQQ 187
>gi|169162301 PREDICTED: hypothetical protein [Homo sapiens]
Length = 197
Score = 27.3 bits (59), Expect = 2.7
Identities = 15/41 (36%), Positives = 19/41 (46%)
Query: 25 ELRGSSRAGRVCQRPLLPVSVGIFQKAEHGGQVKPGRPAQW 65
ELRGSSR + + PV + + G GRPA W
Sbjct: 150 ELRGSSRLTCILKYAFCPVLISSPSTSAGGMGASAGRPACW 190
>gi|169161809 PREDICTED: hypothetical protein [Homo sapiens]
Length = 197
Score = 27.3 bits (59), Expect = 2.7
Identities = 15/41 (36%), Positives = 19/41 (46%)
Query: 25 ELRGSSRAGRVCQRPLLPVSVGIFQKAEHGGQVKPGRPAQW 65
ELRGSSR + + PV + + G GRPA W
Sbjct: 150 ELRGSSRLTCILKYAFCPVLISSPSTSAGGMGASAGRPACW 190
>gi|169162579 PREDICTED: hypothetical protein [Homo sapiens]
Length = 197
Score = 27.3 bits (59), Expect = 2.7
Identities = 15/41 (36%), Positives = 19/41 (46%)
Query: 25 ELRGSSRAGRVCQRPLLPVSVGIFQKAEHGGQVKPGRPAQW 65
ELRGSSR + + PV + + G GRPA W
Sbjct: 150 ELRGSSRLTCILKYAFCPVLISSPSTSAGGMGASAGRPACW 190
>gi|32490567 relaxin 3 receptor 2 [Homo sapiens]
Length = 374
Score = 27.3 bits (59), Expect = 2.7
Identities = 11/39 (28%), Positives = 22/39 (56%)
Query: 67 QLWPEGHQWTQRPRERSRGQQETANAEAQSDQDTVLVHI 105
+LWP+G W Q+ + G++ A+ +S T+L ++
Sbjct: 330 RLWPQGGGWVQQVALKQVGRRWVASNPRESRPSTLLTNL 368
>gi|163644283 proteasome (prosome, macropain) activator subunit 4
[Homo sapiens]
Length = 1843
Score = 27.3 bits (59), Expect = 2.7
Identities = 10/19 (52%), Positives = 13/19 (68%)
Query: 60 GRPAQWQQLWPEGHQWTQR 78
GR Q Q+LWP G WT++
Sbjct: 60 GRAVQLQELWPGGLFWTRK 78
>gi|109389365 glucose-6-phosphate dehydrogenase isoform a [Homo
sapiens]
Length = 545
Score = 26.9 bits (58), Expect = 3.5
Identities = 12/22 (54%), Positives = 13/22 (59%)
Query: 13 LGRRGSGSVRGAELRGSSRAGR 34
+GRRGS G LRG R GR
Sbjct: 1 MGRRGSAPGNGRTLRGCERGGR 22
>gi|26051240 tumor necrosis factor, alpha-induced protein 2 [Homo
sapiens]
Length = 654
Score = 26.9 bits (58), Expect = 3.5
Identities = 15/45 (33%), Positives = 21/45 (46%), Gaps = 6/45 (13%)
Query: 61 RPAQWQQLWPEGHQWTQRPRERSRGQQETANAEAQSDQDTVLVHI 105
RP +W QLW G E GQ+ A AE ++V +H+
Sbjct: 182 RPRRWLQLWRRG---VAEAAEERMGQRPAAGAEV---PESVFLHL 220
>gi|221219020 NYD-SP11 protein [Homo sapiens]
Length = 2873
Score = 26.6 bits (57), Expect = 4.6
Identities = 13/55 (23%), Positives = 29/55 (52%)
Query: 45 VGIFQKAEHGGQVKPGRPAQWQQLWPEGHQWTQRPRERSRGQQETANAEAQSDQD 99
V + ++ G+ K + + Q+ E H+W + R+R+R +++ A E + Q+
Sbjct: 1544 VTLEEEVSREGEEKEQQVTEEQRHIQEEHKWARIHRKRARAEKKRAQEERKLAQE 1598
>gi|239757942 PREDICTED: hypothetical protein XP_002346387 [Homo
sapiens]
Length = 239
Score = 26.6 bits (57), Expect = 4.6
Identities = 20/69 (28%), Positives = 26/69 (37%), Gaps = 4/69 (5%)
Query: 18 SGSVRGAELRGSSRAGRVCQRPLLPVSVGIFQKAEHGGQVKPGRPAQWQQLW--PEGHQW 75
S + G LR GRV R G K H +P + +W P H W
Sbjct: 41 SSLMAGLSLRSPEVVGRVASRARARTWEG--GKEGHAAVPQPATRSGRLGVWGGPLRHSW 98
Query: 76 TQRPRERSR 84
RPR+ S+
Sbjct: 99 APRPRQASQ 107
>gi|239754418 PREDICTED: hypothetical protein [Homo sapiens]
Length = 106
Score = 26.6 bits (57), Expect = 4.6
Identities = 25/77 (32%), Positives = 30/77 (38%), Gaps = 11/77 (14%)
Query: 23 GAELRGSSRAGRVCQRPLLPVSVGIFQKAEHGG--QVKPGRPA--------QWQQLWPEG 72
G LR S A QRP LP G + HGG Q P PA + +PEG
Sbjct: 28 GRALRQDSAAAGPGQRPPLPKPGGNSSPSRHGGCAQCAP-EPAPLTGALSGRLHVAFPEG 86
Query: 73 HQWTQRPRERSRGQQET 89
+ R +G ET
Sbjct: 87 YHKINRDTPSPQGASET 103
>gi|239748946 PREDICTED: hypothetical protein XP_002346864 [Homo
sapiens]
Length = 106
Score = 26.6 bits (57), Expect = 4.6
Identities = 25/77 (32%), Positives = 30/77 (38%), Gaps = 11/77 (14%)
Query: 23 GAELRGSSRAGRVCQRPLLPVSVGIFQKAEHGG--QVKPGRPA--------QWQQLWPEG 72
G LR S A QRP LP G + HGG Q P PA + +PEG
Sbjct: 28 GRALRQDSAAAGPGQRPPLPKPGGNSSPSRHGGCAQCAP-EPAPLTGALSGRLHVAFPEG 86
Query: 73 HQWTQRPRERSRGQQET 89
+ R +G ET
Sbjct: 87 YHKINRDTPSPQGASET 103
>gi|239742968 PREDICTED: hypothetical protein XP_002342707 [Homo
sapiens]
Length = 106
Score = 26.6 bits (57), Expect = 4.6
Identities = 25/77 (32%), Positives = 30/77 (38%), Gaps = 11/77 (14%)
Query: 23 GAELRGSSRAGRVCQRPLLPVSVGIFQKAEHGG--QVKPGRPA--------QWQQLWPEG 72
G LR S A QRP LP G + HGG Q P PA + +PEG
Sbjct: 28 GRALRQDSAAAGPGQRPPLPKPGGNSSPSRHGGCAQCAP-EPAPLTGALSGRLHVAFPEG 86
Query: 73 HQWTQRPRERSRGQQET 89
+ R +G ET
Sbjct: 87 YHKINRDTPSPQGASET 103
>gi|33354279 hypothetical protein LOC55425 [Homo sapiens]
Length = 340
Score = 26.6 bits (57), Expect = 4.6
Identities = 14/36 (38%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Query: 75 WTQRPRERSRGQQETANAEAQSDQDTVLVHILGGAD 110
WT P +R R +ET A S + HIL G D
Sbjct: 223 WTDTPADRERKAKETQEARKSSSKKDE-EHILSGRD 257
>gi|104294888 fms-related tyrosine kinase 4 isoform 1 precursor [Homo
sapiens]
Length = 1363
Score = 26.2 bits (56), Expect = 6.0
Identities = 24/95 (25%), Positives = 37/95 (38%), Gaps = 23/95 (24%)
Query: 22 RGAELRGSSRAGRVCQRPLLPVSV----------GIFQKAEHGGQVK------------- 58
RGAE RGSSR + P+ P + G+ +E Q++
Sbjct: 1242 RGAETRGSSRMKTFEEFPMTPTTYKGSVDNQTDSGMVLASEEFEQIESRHRQESGFSCKG 1301
Query: 59 PGRPAQWQQLWPEGHQWTQRPRERSRGQQETANAE 93
PG+ + P+ +RP +RG Q N+E
Sbjct: 1302 PGQNVAVTRAHPDSQGRRRRPERGARGGQVFYNSE 1336
>gi|239751590 PREDICTED: hypothetical protein XP_002347921 [Homo
sapiens]
Length = 192
Score = 26.2 bits (56), Expect = 6.0
Identities = 17/56 (30%), Positives = 25/56 (44%), Gaps = 5/56 (8%)
Query: 24 AELRGSSRAGRVCQR-----PLLPVSVGIFQKAEHGGQVKPGRPAQWQQLWPEGHQ 74
AE +G R R Q P + G F+K++ G+ G +QW Q P+ Q
Sbjct: 132 AEAQGQVRRPRPAQAVGPSGARRPEAPGWFRKSDRSGRAGTGAWSQWPQANPDEQQ 187
>gi|239749667 PREDICTED: hypothetical protein XP_002347127 [Homo
sapiens]
Length = 146
Score = 26.2 bits (56), Expect = 6.0
Identities = 21/73 (28%), Positives = 27/73 (36%), Gaps = 13/73 (17%)
Query: 14 GRRGSGSVRGAELRGSS--------RAGRVCQRPLLPVSVGIFQKAEHGGQVKPGRPAQW 65
G RGS S+ G S + G+V RPL + K+ G + G P
Sbjct: 46 GHRGSCSIIRQSRSGQSTNVLVLCLQVGQVGLRPLAAAA-----KSFPDGVAEDGHPGGP 100
Query: 66 QQLWPEGHQWTQR 78
WP W QR
Sbjct: 101 SDRWPRATWWPQR 113
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.316 0.132 0.410
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,900,085
Number of Sequences: 37866
Number of extensions: 231445
Number of successful extensions: 782
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 753
Number of HSP's gapped (non-prelim): 48
length of query: 111
length of database: 18,247,518
effective HSP length: 81
effective length of query: 30
effective length of database: 15,180,372
effective search space: 455411160
effective search space used: 455411160
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.