Guide to the Human Genome
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Name: LOC100129268 Sequence: fasta or formatted (197aa) NCBI GI: 169161809
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Other entries for this name:
alt mRNA {197aa} PREDICTED: hypothetical protein
alt mRNA {197aa} PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.6         13           2
 C cysteine            3.6          7           1
 D aspartate           2.0          4           1
 E glutamate           2.5          5           3
 F phenylalanine       3.0          6           1
 G glycine             4.1          8           2
 H histidine           4.1          8           1
 I isoleucine          4.6          9           2
 K lysine              2.5          5           1
 L leucine            12.2         24           2
 M methionine          2.5          5           1
 N asparagine          3.0          6           1
 P proline            11.7         23           2
 Q glutamine           5.1         10           1
 R arginine            5.1         10           2
 S serine             11.7         23           2
 T threonine           7.1         14           2
 V valine              5.1         10           1
 W tryptophan          2.0          4           1
 Y tyrosine            1.5          3           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100129268          1.000   PREDICTED: hypothetical protein 
LOC100129268          1.000   PREDICTED: hypothetical protein 
LOC100288809          0.013   PREDICTED: hypothetical protein XP_002343208 
SRCAP                 0.013   Snf2-related CBP activator protein 
LOC100287171          0.010   PREDICTED: hypothetical protein XP_002342940 isofor...
LOC100287171          0.010   PREDICTED: hypothetical protein XP_002342939 isofor...
WASH1                 0.010   WAS protein family homolog 1 
LOC100292653          0.008   PREDICTED: similar to hCG1998564 
LOC100292590          0.008   PREDICTED: hypothetical protein 
NCDN                  0.008   neurochondrin isoform 2 
NCDN                  0.008   neurochondrin isoform 1 
NCDN                  0.008   neurochondrin isoform 1 
TEP1                  0.008   telomerase-associated protein 1 
LOC199897             0.008   PREDICTED: hypothetical protein 
LOC199897             0.008   PREDICTED: hypothetical protein 
SH2B2                 0.008   SH2B adaptor protein 2 
FRMPD3                0.008   PREDICTED: FERM and PDZ domain containing 3 
FRMPD3                0.008   PREDICTED: FERM and PDZ domain containing 3 
FRMPD3                0.008   PREDICTED: FERM and PDZ domain containing 3 
ACR                   0.008   acrosin precursor 
LOC729911             0.005   PREDICTED: hypothetical protein 
WNK2                  0.005   WNK lysine deficient protein kinase 2 
POM121C               0.005   POM121 membrane glycoprotein (rat)-like 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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