Guide to the Human Genome
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Name: LOC100291248 Sequence: fasta or formatted (146aa) NCBI GI: 239749667
Description:

PREDICTED: hypothetical protein XP_002347127

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.8         10           4
 C cysteine            4.1          6           1
 D aspartate           6.2          9           1
 E glutamate           3.4          5           1
 F phenylalanine       1.4          2           1
 G glycine            15.8         23           2
 H histidine           1.4          2           1
 I isoleucine          2.7          4           2
 K lysine              6.8         10           3
 L leucine             6.8         10           1
 M methionine          1.4          2           1
 N asparagine          1.4          2           1
 P proline             4.8          7           1
 Q glutamine           5.5          8           1
 R arginine           10.3         15           2
 S serine              7.5         11           1
 T threonine           2.7          4           1
 V valine              6.8         10           1
 W tryptophan          4.1          6           2
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002347127 
LOC100288920          1.000   PREDICTED: hypothetical protein XP_002342976 
HSPD1                 0.014   chaperonin 
HSPD1                 0.014   chaperonin 
IGLL1                 0.010   immunoglobulin lambda-like polypeptide 1 isoform a p...
COL1A2                0.010   alpha 2 type I collagen 
NHSL1                 0.007   NHS-like 1 
DACT3                 0.007   thymus expressed gene 3-like 
ALPK2                 0.007   heart alpha-kinase 
C9orf170              0.007   hypothetical protein LOC401535 
COL6A3                0.007   alpha 3 type VI collagen isoform 5 precursor 
COL6A3                0.007   alpha 3 type VI collagen isoform 1 precursor 
COL6A3                0.007   alpha 3 type VI collagen isoform 4 precursor 
EEF2                  0.007   eukaryotic translation elongation factor 2 
CCDC148               0.007   coiled-coil domain containing 148 
BRWD3                 0.007   bromodomain and WD repeat domain containing 3 [Homo...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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