Guide to the Human Genome
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Name: LOC645212 Sequence: fasta or formatted (119aa) NCBI GI: 239756340
Description:

PREDICTED: hypothetical LOC645212, partial

Not currently referenced in the text

Other entries for this name:
alt prot {149aa} PREDICTED: hypothetical protein
alt prot {149aa} PREDICTED: hypothetical LOC645212
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            10.9         13           1
 C cysteine            2.5          3           1
 D aspartate           0.8          1           1
 E glutamate           4.2          5           2
 F phenylalanine       2.5          3           2
 G glycine            15.1         18           2
 H histidine           0.8          1           1
 I isoleucine          1.7          2           1
 K lysine              0.8          1           1
 L leucine             6.7          8           1
 M methionine          0.0          0           0
 N asparagine          2.5          3           1
 P proline            10.9         13           3
 Q glutamine           1.7          2           1
 R arginine           10.1         12           2
 S serine              9.2         11           1
 T threonine           8.4         10           2
 V valine              8.4         10           2
 W tryptophan          1.7          2           1
 Y tyrosine            0.8          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical LOC645212, partial 
LOC645212             1.000   PREDICTED: hypothetical LOC645212 
LOC645212             1.000   PREDICTED: hypothetical protein 
ADCY6                 0.027   adenylate cyclase 6 isoform a 
ADCY6                 0.027   adenylate cyclase 6 isoform b 
LOC645249             0.023   PREDICTED: hypothetical protein 
TMEM108               0.023   transmembrane protein 108 
TMEM108               0.023   transmembrane protein 108 
DSG3                  0.018   desmoglein 3 preproprotein 
LOC100292397          0.018   PREDICTED: hypothetical protein 
KIAA0368              0.018   KIAA0368 protein 
PRPSAP1               0.014   phosphoribosyl pyrophosphate synthetase-associated ...
GPR153                0.014   G protein-coupled receptor 153 
ARID1B                0.014   AT rich interactive domain 1B (SWI1-like) isoform 2 ...
ARID1B                0.014   AT rich interactive domain 1B (SWI1-like) isoform 1 ...
ARID1B                0.014   AT rich interactive domain 1B (SWI1-like) isoform 3 ...
LOC729590             0.014   PREDICTED: hypothetical protein 
LOC100292409          0.014   PREDICTED: hypothetical protein 
LOC729590             0.014   PREDICTED: hypothetical protein 
LOC729590             0.014   PREDICTED: hypothetical protein 
ZNF414                0.014   zinc finger protein 414 isoform 1 
ZNF414                0.014   zinc finger protein 414 isoform 2 
JTB                   0.009   jumping translocation breakpoint 
LIMD1                 0.009   LIM domains containing 1 
SRCAP                 0.009   Snf2-related CBP activator protein 
CRAT                  0.009   carnitine acetyltransferase precursor 
LOC100292005          0.009   PREDICTED: hypothetical protein XP_002345577 
LOC100288108          0.009   PREDICTED: hypothetical protein 
LOC100290520          0.009   PREDICTED: hypothetical protein XP_002348255 
LOC100288108          0.009   PREDICTED: hypothetical protein XP_002342919 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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