Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: LOC645212 Sequence: fasta or formatted (149aa) NCBI GI: 239750823
Description:

PREDICTED: hypothetical LOC645212

Not currently referenced in the text

Other entries for this name:
alt mRNA {149aa} PREDICTED: hypothetical protein
alt prot {119aa} PREDICTED: hypothetical LOC645212, partial
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            13.4         20           4
 C cysteine            2.0          3           1
 D aspartate           0.7          1           1
 E glutamate           5.4          8           2
 F phenylalanine       2.0          3           2
 G glycine            13.4         20           2
 H histidine           1.3          2           1
 I isoleucine          1.3          2           1
 K lysine              0.7          1           1
 L leucine             6.0          9           1
 M methionine          0.7          1           1
 N asparagine          2.0          3           1
 P proline            10.7         16           3
 Q glutamine           2.7          4           1
 R arginine           11.4         17           2
 S serine              7.4         11           1
 T threonine           8.7         13           2
 V valine              7.4         11           2
 W tryptophan          2.0          3           1
 Y tyrosine            0.7          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical LOC645212 
LOC645212             1.000   PREDICTED: hypothetical protein 
LOC645212             0.784   PREDICTED: hypothetical LOC645212, partial 
SCAF1                 0.032   SR-related CTD-associated factor 1 
LOC646509             0.028   PREDICTED: hypothetical protein 
BSN                   0.025   bassoon protein 
ADCY6                 0.021   adenylate cyclase 6 isoform a 
ADCY6                 0.021   adenylate cyclase 6 isoform b 
ARL6IP4               0.021   SRp25 nuclear protein isoform 4 
ARL6IP4               0.021   SRp25 nuclear protein isoform 3 
ARL6IP4               0.021   SRp25 nuclear protein isoform 2 
ARL6IP4               0.021   SRp25 nuclear protein isoform 1 
LOC100132848          0.018   PREDICTED: hypothetical protein 
SRCAP                 0.018   Snf2-related CBP activator protein 
LOC645249             0.018   PREDICTED: hypothetical protein 
LOC100292591          0.018   PREDICTED: hypothetical protein 
LOC100287994          0.018   PREDICTED: hypothetical protein 
LOC100288108          0.018   PREDICTED: hypothetical protein 
LOC100287994          0.018   PREDICTED: hypothetical protein XP_002342988 
LOC100288108          0.018   PREDICTED: hypothetical protein XP_002342919 
LOC100133305          0.018   PREDICTED: hypothetical protein 
LOC100133305          0.018   PREDICTED: hypothetical protein 
NXPH4                 0.018   neurexophilin 4 
TMEM108               0.018   transmembrane protein 108 
TMEM108               0.018   transmembrane protein 108 
SIPA1L3               0.018   signal-induced proliferation-associated 1 like 3 [Ho...
DSG3                  0.014   desmoglein 3 preproprotein 
TSC22D2               0.014   TSC22 domain family, member 2 
KIAA0895L             0.014   hypothetical protein LOC653319 
LOC100292397          0.014   PREDICTED: hypothetical protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press