Guide to the Human Genome
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Name: LOC100292425 Sequence: fasta or formatted (114aa) NCBI GI: 239756326
Description:

PREDICTED: hypothetical protein isoform 3

Not currently referenced in the text

Other entries for this name:
alt prot {194aa} PREDICTED: hypothetical protein isoform 2
alt prot {64aa} PREDICTED: hypothetical protein isoform 1
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            13.2         15           3
 C cysteine            0.0          0           0
 D aspartate           0.9          1           1
 E glutamate           5.3          6           1
 F phenylalanine       5.3          6           2
 G glycine             7.9          9           1
 H histidine           3.5          4           1
 I isoleucine          0.0          0           0
 K lysine              3.5          4           1
 L leucine            14.0         16           3
 M methionine          0.9          1           1
 N asparagine          2.6          3           1
 P proline             8.8         10           1
 Q glutamine           7.9          9           1
 R arginine           13.2         15           2
 S serine              4.4          5           1
 T threonine           5.3          6           1
 V valine              3.5          4           1
 W tryptophan          0.0          0           0
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein isoform 3 
LOC100292425          1.000   PREDICTED: hypothetical protein isoform 2 
LOC100291013          1.000   PREDICTED: hypothetical protein XP_002347575 isofor...
LOC100291013          1.000   PREDICTED: hypothetical protein XP_002347574 isofor...
LOC100288938          1.000   PREDICTED: hypothetical protein XP_002343404 isofor...
MAPK15                0.039   mitogen-activated protein kinase 15 
ZIC3                  0.039   zinc finger protein of the cerebellum 3 
AMOT                  0.025   angiomotin isoform 2 
AMOT                  0.025   angiomotin isoform 1 
LOC100287250          0.025   PREDICTED: hypothetical protein XP_002344493 
WNK2                  0.025   WNK lysine deficient protein kinase 2 
C15orf39              0.025   hypothetical protein LOC56905 
LOC129293             0.025   hypothetical protein LOC129293 
LOC100291507          0.020   PREDICTED: hypothetical protein XP_002347366 
C6orf27               0.020   G7c protein 
ENAH                  0.020   enabled homolog isoform a 
ENAH                  0.020   enabled homolog isoform b 
PRKAR2B               0.015   cAMP-dependent protein kinase, regulatory subunit be...
USP31                 0.015   ubiquitin specific peptidase 31 
PLEKHG6               0.015   pleckstrin homology domain-containing family G memb...
PLEKHG6               0.015   pleckstrin homology domain-containing family G memb...
C21orf66              0.015   GC-rich sequence DNA-binding factor candidate isofor...
C21orf66              0.015   GC-rich sequence DNA-binding factor candidate isofor...
NDUFV3                0.015   NADH-ubiquinone oxidoreductase flavoprotein 3 isofor...
BTBD6                 0.015   BTB domain protein BDPL 
SPON2                 0.015   spondin 2, extracellular matrix protein 
SPON2                 0.015   spondin 2, extracellular matrix protein 
LRCH4                 0.015   leucine-rich repeats and calponin homology (CH) doma...
XYLB                  0.010   xylulokinase 
MAGI2                 0.010   membrane associated guanylate kinase, WW and PDZ dom...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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