Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: LOC100292425 Sequence: fasta or formatted (64aa) NCBI GI: 239756328
Description:

PREDICTED: hypothetical protein isoform 1

Not currently referenced in the text

Other entries for this name:
alt prot {194aa} PREDICTED: hypothetical protein isoform 2
alt prot {114aa} PREDICTED: hypothetical protein isoform 3
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.2          4           1
 C cysteine            1.6          1           1
 D aspartate           0.0          0           0
 E glutamate           1.6          1           1
 F phenylalanine       3.1          2           1
 G glycine             9.4          6           1
 H histidine           1.6          1           1
 I isoleucine          4.7          3           1
 K lysine              6.2          4           1
 L leucine            14.1          9           1
 M methionine          1.6          1           1
 N asparagine          1.6          1           1
 P proline             3.1          2           1
 Q glutamine           0.0          0           0
 R arginine           18.8         12           3
 S serine             17.2         11           2
 T threonine           1.6          1           1
 V valine              1.6          1           1
 W tryptophan          3.1          2           1
 Y tyrosine            3.1          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein isoform 1 
LOC100291013          1.000   PREDICTED: hypothetical protein XP_002347576 isofor...
LOC100288938          1.000   PREDICTED: hypothetical protein XP_002343405 isofor...
USP37                 0.029   ubiquitin specific peptidase 37 
C1orf89               0.010   hypothetical protein LOC79363 
LOC100291595          0.010   PREDICTED: hypothetical protein XP_002345793 
LOC100291431          0.010   PREDICTED: hypothetical protein XP_002346654 
LOC100289468          0.010   PREDICTED: hypothetical protein XP_002342491 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press