Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: SPON2 Sequence: fasta or formatted (331aa) NCBI GI: 190341087
Description:

spondin 2, extracellular matrix protein

Referenced in:

Additional Genes in Development

Other entries for this name:
alt mRNA [331aa] spondin 2, extracellular matrix protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            11.2         37           3
 C cysteine            2.7          9           1
 D aspartate           4.5         15           1
 E glutamate           5.7         19           3
 F phenylalanine       3.6         12           1
 G glycine             6.6         22           2
 H histidine           1.5          5           1
 I isoleucine          2.7          9           1
 K lysine              2.4          8           1
 L leucine             8.8         29           3
 M methionine          0.9          3           1
 N asparagine          2.7          9           2
 P proline             9.4         31           2
 Q glutamine           3.6         12           1
 R arginine            6.0         20           2
 S serine             10.9         36           3
 T threonine           4.8         16           1
 V valine              6.6         22           2
 W tryptophan          2.4          8           1
 Y tyrosine            2.7          9           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   spondin 2, extracellular matrix protein 
SPON2                 1.000   spondin 2, extracellular matrix protein 
SPON1                 0.225   spondin 1, extracellular matrix protein 
THSD7B                0.052   thrombospondin, type I, domain containing 7B 
THSD7A                0.046   thrombospondin, type I, domain containing 7A 
C8orf84               0.037   RPE-spondin 
SSPO                  0.027   SCO-spondin 
RSPO1                 0.026   R-spondin1 
RSPO3                 0.024   R-spondin 3 
RSPO2                 0.023   R-spondin family, member 2 
C8B                   0.020   complement component 8, beta polypeptide preproprotei...
BAI1                  0.020   brain-specific angiogenesis inhibitor 1 precursor [...
CILP2                 0.018   cartilage intermediate layer protein 2 
CILP                  0.017   cartilage intermediate layer protein 
BAI2                  0.015   brain-specific angiogenesis inhibitor 2 
HMCN1                 0.015   hemicentin 1 
UNC5D                 0.015   unc-5 homolog D 
ZFC3H1                0.014   proline/serine-rich coiled-coil 2 
CFP                   0.012   complement factor properdin precursor 
BAI3                  0.012   brain-specific angiogenesis inhibitor 3 
CFP                   0.012   complement factor properdin precursor 
C9                    0.012   complement component 9 precursor 
TBX22                 0.012   T-box 22 isoform 2 
TBX22                 0.012   T-box 22 isoform 1 
TBX22                 0.012   T-box 22 isoform 1 
MGA                   0.012   MAX gene associated 
UNC5C                 0.011   unc5C 
ADAMTS17              0.011   ADAM metallopeptidase with thrombospondin type 1 mo...
THBS1                 0.011   thrombospondin 1 precursor 
SPEN                  0.011   spen homolog, transcriptional regulator 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press