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Search of human proteins with 239756315
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239756315 PREDICTED: hypothetical protein [Homo sapiens]
(143 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239756315 PREDICTED: hypothetical protein [Homo sapiens] 293 3e-80
gi|239750850 PREDICTED: hypothetical protein XP_002347579 [Homo ... 291 2e-79
gi|239745213 PREDICTED: hypothetical protein XP_002343410 [Homo ... 291 2e-79
gi|239750960 PREDICTED: hypothetical protein XP_002347618 [Homo ... 30 0.90
gi|239745366 PREDICTED: hypothetical protein XP_002343448 [Homo ... 30 0.90
gi|223890203 zinc finger and BTB domain containing 22 [Homo sapi... 29 1.2
gi|223890199 zinc finger and BTB domain containing 22 [Homo sapi... 29 1.2
gi|122937195 plasma membrane associated protein, S3-12 [Homo sap... 29 1.5
gi|148596990 cutC copper transporter homolog [Homo sapiens] 29 1.5
gi|83715964 high-mobility group 20B [Homo sapiens] 28 2.6
gi|156104891 general transcription factor IIF, polypeptide 1, 74... 28 3.4
gi|22094125 zinc finger protein 28 [Homo sapiens] 28 3.4
gi|226053185 paternally expressed 3 isoform 3 [Homo sapiens] 27 4.4
gi|226053169 paternally expressed 3 isoform 1 [Homo sapiens] 27 4.4
gi|226053148 paternally expressed 3 isoform 2 [Homo sapiens] 27 4.4
gi|226053126 paternally expressed 3 isoform 1 [Homo sapiens] 27 4.4
gi|33354285 paternally expressed 3 isoform 1 [Homo sapiens] 27 4.4
gi|239756028 PREDICTED: hypothetical protein [Homo sapiens] 27 4.4
gi|6754472 kinesin family member 23 isoform 2 [Homo sapiens] 27 5.8
gi|20143967 kinesin family member 23 isoform 1 [Homo sapiens] 27 5.8
gi|119220598 apolipoprotein B48 receptor [Homo sapiens] 27 5.8
gi|229577391 pyridine nucleotide-disulphide oxidoreductase domai... 27 7.6
gi|169201839 PREDICTED: similar to hCG2038970 [Homo sapiens] 27 7.6
gi|169201482 PREDICTED: similar to hCG2038970 [Homo sapiens] 27 7.6
gi|239744229 PREDICTED: similar to hCG2038970 [Homo sapiens] 27 7.6
gi|108389176 tRNA splicing endonuclease 54 homolog [Homo sapiens] 27 7.6
gi|213972636 tumor protein p53 binding protein 1 isoform 1 [Homo... 27 7.6
gi|213972634 tumor protein p53 binding protein 1 isoform 2 [Homo... 27 7.6
gi|5032189 tumor protein p53 binding protein 1 isoform 3 [Homo s... 27 7.6
gi|54607035 integrin beta 4 isoform 1 precursor [Homo sapiens] 27 7.6
>gi|239756315 PREDICTED: hypothetical protein [Homo sapiens]
Length = 143
Score = 293 bits (751), Expect = 3e-80
Identities = 143/143 (100%), Positives = 143/143 (100%)
Query: 1 MNAGRGPSQGSGSSCELAPISNDASKGWASGRAEGGTTPAFPRAQVSQWSQVKKEVKTGV 60
MNAGRGPSQGSGSSCELAPISNDASKGWASGRAEGGTTPAFPRAQVSQWSQVKKEVKTGV
Sbjct: 1 MNAGRGPSQGSGSSCELAPISNDASKGWASGRAEGGTTPAFPRAQVSQWSQVKKEVKTGV 60
Query: 61 AARVRRQGGVLQGGFEEVKEPVRGVIKVDRACQGGSISGETTPGSGCGYKHRMLIGREGF 120
AARVRRQGGVLQGGFEEVKEPVRGVIKVDRACQGGSISGETTPGSGCGYKHRMLIGREGF
Sbjct: 61 AARVRRQGGVLQGGFEEVKEPVRGVIKVDRACQGGSISGETTPGSGCGYKHRMLIGREGF 120
Query: 121 YRQVRVSLVAELLRVGLQGHWSH 143
YRQVRVSLVAELLRVGLQGHWSH
Sbjct: 121 YRQVRVSLVAELLRVGLQGHWSH 143
>gi|239750850 PREDICTED: hypothetical protein XP_002347579 [Homo
sapiens]
Length = 143
Score = 291 bits (744), Expect = 2e-79
Identities = 142/143 (99%), Positives = 142/143 (99%)
Query: 1 MNAGRGPSQGSGSSCELAPISNDASKGWASGRAEGGTTPAFPRAQVSQWSQVKKEVKTGV 60
MNAGRGPSQGSGSSCELAPISNDASKGWASGRAEGGTTPAFPRAQVSQWSQVKKEVKTGV
Sbjct: 1 MNAGRGPSQGSGSSCELAPISNDASKGWASGRAEGGTTPAFPRAQVSQWSQVKKEVKTGV 60
Query: 61 AARVRRQGGVLQGGFEEVKEPVRGVIKVDRACQGGSISGETTPGSGCGYKHRMLIGREGF 120
AARVRRQGGVLQGGFEEVKEPVRGVIKVDRACQGGSISGETTPGSGCGYKHRMLIGREGF
Sbjct: 61 AARVRRQGGVLQGGFEEVKEPVRGVIKVDRACQGGSISGETTPGSGCGYKHRMLIGREGF 120
Query: 121 YRQVRVSLVAELLRVGLQGHWSH 143
YRQVRVSL AELLRVGLQGHWSH
Sbjct: 121 YRQVRVSLGAELLRVGLQGHWSH 143
>gi|239745213 PREDICTED: hypothetical protein XP_002343410 [Homo
sapiens]
Length = 143
Score = 291 bits (744), Expect = 2e-79
Identities = 142/143 (99%), Positives = 142/143 (99%)
Query: 1 MNAGRGPSQGSGSSCELAPISNDASKGWASGRAEGGTTPAFPRAQVSQWSQVKKEVKTGV 60
MNAGRGPSQGSGSSCELAPISNDASKGWASGRAEGGTTPAFPRAQVSQWSQVKKEVKTGV
Sbjct: 1 MNAGRGPSQGSGSSCELAPISNDASKGWASGRAEGGTTPAFPRAQVSQWSQVKKEVKTGV 60
Query: 61 AARVRRQGGVLQGGFEEVKEPVRGVIKVDRACQGGSISGETTPGSGCGYKHRMLIGREGF 120
AARVRRQGGVLQGGFEEVKEPVRGVIKVDRACQGGSISGETTPGSGCGYKHRMLIGREGF
Sbjct: 61 AARVRRQGGVLQGGFEEVKEPVRGVIKVDRACQGGSISGETTPGSGCGYKHRMLIGREGF 120
Query: 121 YRQVRVSLVAELLRVGLQGHWSH 143
YRQVRVSL AELLRVGLQGHWSH
Sbjct: 121 YRQVRVSLGAELLRVGLQGHWSH 143
>gi|239750960 PREDICTED: hypothetical protein XP_002347618 [Homo
sapiens]
Length = 100
Score = 29.6 bits (65), Expect = 0.90
Identities = 12/36 (33%), Positives = 17/36 (47%)
Query: 7 PSQGSGSSCELAPISNDASKGWASGRAEGGTTPAFP 42
P + S P DA++GWA+ R +G FP
Sbjct: 28 PEKAKSQSAAARPGRADAARGWAAARTQGQECAVFP 63
>gi|239745366 PREDICTED: hypothetical protein XP_002343448 [Homo
sapiens]
Length = 100
Score = 29.6 bits (65), Expect = 0.90
Identities = 12/36 (33%), Positives = 17/36 (47%)
Query: 7 PSQGSGSSCELAPISNDASKGWASGRAEGGTTPAFP 42
P + S P DA++GWA+ R +G FP
Sbjct: 28 PEKAKSQSAAARPGRADAARGWAAARTQGQECAVFP 63
>gi|223890203 zinc finger and BTB domain containing 22 [Homo
sapiens]
Length = 634
Score = 29.3 bits (64), Expect = 1.2
Identities = 32/117 (27%), Positives = 50/117 (42%), Gaps = 20/117 (17%)
Query: 4 GRGPSQGSGSSCELAPISNDASKGWASGRAEGGTTPA----FPRAQVSQWSQVKKE--VK 57
G G GSG + +AP + +++ AS RA +P+ F + + +S +E
Sbjct: 170 GAGVPSGSGGT--VAPATMGSARSHASSRASENQSPSSSNYFSPRESTDFSSSSQEAFAA 227
Query: 58 TGVAARVRRQGG-------VLQGGFEEVKEPVRGVIKVDRAC-QGGSISGETTPGSG 106
+ V + RR GG V GG K +++ D C GG G PG+G
Sbjct: 228 SAVGSGERRGGGPVFPAPVVGSGGATSGKL----LLEADELCDDGGDGRGAVVPGAG 280
>gi|223890199 zinc finger and BTB domain containing 22 [Homo
sapiens]
Length = 634
Score = 29.3 bits (64), Expect = 1.2
Identities = 32/117 (27%), Positives = 50/117 (42%), Gaps = 20/117 (17%)
Query: 4 GRGPSQGSGSSCELAPISNDASKGWASGRAEGGTTPA----FPRAQVSQWSQVKKE--VK 57
G G GSG + +AP + +++ AS RA +P+ F + + +S +E
Sbjct: 170 GAGVPSGSGGT--VAPATMGSARSHASSRASENQSPSSSNYFSPRESTDFSSSSQEAFAA 227
Query: 58 TGVAARVRRQGG-------VLQGGFEEVKEPVRGVIKVDRAC-QGGSISGETTPGSG 106
+ V + RR GG V GG K +++ D C GG G PG+G
Sbjct: 228 SAVGSGERRGGGPVFPAPVVGSGGATSGKL----LLEADELCDDGGDGRGAVVPGAG 280
>gi|122937195 plasma membrane associated protein, S3-12 [Homo
sapiens]
Length = 1357
Score = 28.9 bits (63), Expect = 1.5
Identities = 15/42 (35%), Positives = 24/42 (57%)
Query: 47 SQWSQVKKEVKTGVAARVRRQGGVLQGGFEEVKEPVRGVIKV 88
S+ S+ K V +GVA+ V GV+QGG + + + G +V
Sbjct: 83 SKMSRAKDAVSSGVASVVDVAKGVVQGGLDTTRSALTGTKEV 124
>gi|148596990 cutC copper transporter homolog [Homo sapiens]
Length = 273
Score = 28.9 bits (63), Expect = 1.5
Identities = 17/40 (42%), Positives = 23/40 (57%), Gaps = 5/40 (12%)
Query: 30 SGRAEGGTTPAFPRAQVSQWSQVKKEVKTGVAARVRRQGG 69
SG +EGGTTP+ QV VK+ V+ V +R +GG
Sbjct: 53 SGLSEGGTTPSMGVLQV-----VKQSVQIPVFVMIRPRGG 87
>gi|83715964 high-mobility group 20B [Homo sapiens]
Length = 317
Score = 28.1 bits (61), Expect = 2.6
Identities = 16/60 (26%), Positives = 25/60 (41%), Gaps = 3/60 (5%)
Query: 4 GRGPSQGSGSSCELAPISNDASKGWASGRAEGGTTPAFPRAQVSQWSQVKKEVKTGVAAR 63
G GP G S E P+ +GW G+ P P+A V+ + + E + + R
Sbjct: 35 GEGPRAGEKGSHEEEPVKK---RGWPKGKKRKKILPNGPKAPVTGYVRFLNERREQIRTR 91
>gi|156104891 general transcription factor IIF, polypeptide 1, 74kDa
[Homo sapiens]
Length = 517
Score = 27.7 bits (60), Expect = 3.4
Identities = 22/74 (29%), Positives = 31/74 (41%), Gaps = 15/74 (20%)
Query: 33 AEGGTTPAFPRAQVSQWSQVKKEVKTGVAARVRRQGGVLQGGFEEVKEPVRGVIKVDRAC 92
AEGG+T + RA S+ Q K+ + A R+R G + +P
Sbjct: 392 AEGGSTSSTLRAAASKLEQGKRVSEMPAAKRLRLDTGPQSLSGKSTPQPP---------- 441
Query: 93 QGGSISGETTPGSG 106
SG+TTP SG
Sbjct: 442 -----SGKTTPNSG 450
>gi|22094125 zinc finger protein 28 [Homo sapiens]
Length = 868
Score = 27.7 bits (60), Expect = 3.4
Identities = 22/80 (27%), Positives = 36/80 (45%), Gaps = 9/80 (11%)
Query: 3 AGRGPSQGSGSSCELAPISNDASKGWASGRAEGGTTPAFP--RAQVSQWSQVKKE----- 55
AGRGP+ G+ ++ L S+ + + + G P P RA S+ + + +E
Sbjct: 27 AGRGPTVGTPATLALPARGRPRSRNGLASKGQRGAAPTGPGHRALPSRDTALPQERNKKL 86
Query: 56 --VKTGVAARVRRQGGVLQG 73
V TG+ + QG V G
Sbjct: 87 EAVGTGIEPKAMSQGLVTFG 106
>gi|226053185 paternally expressed 3 isoform 3 [Homo sapiens]
Length = 1464
Score = 27.3 bits (59), Expect = 4.4
Identities = 15/55 (27%), Positives = 23/55 (41%), Gaps = 2/55 (3%)
Query: 23 DASKGWASGRAEGGT--TPAFPRAQVSQWSQVKKEVKTGVAARVRRQGGVLQGGF 75
D S+ SGRA + + FPR W + + V + +G +GGF
Sbjct: 197 DVSRSSKSGRARESSDRSQRFPRMSDDNWKDISLNKRESVIQQRVYEGNAFRGGF 251
>gi|226053169 paternally expressed 3 isoform 1 [Homo sapiens]
Length = 1588
Score = 27.3 bits (59), Expect = 4.4
Identities = 15/55 (27%), Positives = 23/55 (41%), Gaps = 2/55 (3%)
Query: 23 DASKGWASGRAEGGT--TPAFPRAQVSQWSQVKKEVKTGVAARVRRQGGVLQGGF 75
D S+ SGRA + + FPR W + + V + +G +GGF
Sbjct: 321 DVSRSSKSGRARESSDRSQRFPRMSDDNWKDISLNKRESVIQQRVYEGNAFRGGF 375
>gi|226053148 paternally expressed 3 isoform 2 [Homo sapiens]
Length = 1462
Score = 27.3 bits (59), Expect = 4.4
Identities = 15/55 (27%), Positives = 23/55 (41%), Gaps = 2/55 (3%)
Query: 23 DASKGWASGRAEGGT--TPAFPRAQVSQWSQVKKEVKTGVAARVRRQGGVLQGGF 75
D S+ SGRA + + FPR W + + V + +G +GGF
Sbjct: 195 DVSRSSKSGRARESSDRSQRFPRMSDDNWKDISLNKRESVIQQRVYEGNAFRGGF 249
>gi|226053126 paternally expressed 3 isoform 1 [Homo sapiens]
Length = 1588
Score = 27.3 bits (59), Expect = 4.4
Identities = 15/55 (27%), Positives = 23/55 (41%), Gaps = 2/55 (3%)
Query: 23 DASKGWASGRAEGGT--TPAFPRAQVSQWSQVKKEVKTGVAARVRRQGGVLQGGF 75
D S+ SGRA + + FPR W + + V + +G +GGF
Sbjct: 321 DVSRSSKSGRARESSDRSQRFPRMSDDNWKDISLNKRESVIQQRVYEGNAFRGGF 375
>gi|33354285 paternally expressed 3 isoform 1 [Homo sapiens]
Length = 1588
Score = 27.3 bits (59), Expect = 4.4
Identities = 15/55 (27%), Positives = 23/55 (41%), Gaps = 2/55 (3%)
Query: 23 DASKGWASGRAEGGT--TPAFPRAQVSQWSQVKKEVKTGVAARVRRQGGVLQGGF 75
D S+ SGRA + + FPR W + + V + +G +GGF
Sbjct: 321 DVSRSSKSGRARESSDRSQRFPRMSDDNWKDISLNKRESVIQQRVYEGNAFRGGF 375
>gi|239756028 PREDICTED: hypothetical protein [Homo sapiens]
Length = 255
Score = 27.3 bits (59), Expect = 4.4
Identities = 25/105 (23%), Positives = 33/105 (31%), Gaps = 22/105 (20%)
Query: 7 PSQGSGSSCELAPISNDASKGWASGRAEGGTTPAFPRAQVSQWSQVKKEVKTGVAARVRR 66
P G+ C+ P S GW S A G P G +R
Sbjct: 98 PRGGASPQCDGGPKSQGGKSGWLSVPASRGVAP------------------PGAMGILRA 139
Query: 67 QGGVLQGGFEEVKE----PVRGVIKVDRACQGGSISGETTPGSGC 107
+GG G + P + V RA G + E+ P GC
Sbjct: 140 RGGRGTGSQSPLPASLGVPPPPAMGVQRARGGRGVGSESPPRWGC 184
>gi|6754472 kinesin family member 23 isoform 2 [Homo sapiens]
Length = 856
Score = 26.9 bits (58), Expect = 5.8
Identities = 21/78 (26%), Positives = 32/78 (41%), Gaps = 5/78 (6%)
Query: 8 SQGSGSSCELAPISN--DASKGWASGRAEGGTTPAFPRAQVSQWSQVKKEVKTGVAARVR 65
++G G S + I S + R PA P S+W+ V E + VA +
Sbjct: 779 TRGGGQSVQFTDIETLKQESPNGSRKRRSSTVAPAQPDGAESEWTDV--ETRCSVAVEM- 835
Query: 66 RQGGVLQGGFEEVKEPVR 83
R G L G++ +P R
Sbjct: 836 RAGSQLGPGYQHHAQPKR 853
>gi|20143967 kinesin family member 23 isoform 1 [Homo sapiens]
Length = 960
Score = 26.9 bits (58), Expect = 5.8
Identities = 21/78 (26%), Positives = 32/78 (41%), Gaps = 5/78 (6%)
Query: 8 SQGSGSSCELAPISN--DASKGWASGRAEGGTTPAFPRAQVSQWSQVKKEVKTGVAARVR 65
++G G S + I S + R PA P S+W+ V E + VA +
Sbjct: 883 TRGGGQSVQFTDIETLKQESPNGSRKRRSSTVAPAQPDGAESEWTDV--ETRCSVAVEM- 939
Query: 66 RQGGVLQGGFEEVKEPVR 83
R G L G++ +P R
Sbjct: 940 RAGSQLGPGYQHHAQPKR 957
>gi|119220598 apolipoprotein B48 receptor [Homo sapiens]
Length = 1088
Score = 26.9 bits (58), Expect = 5.8
Identities = 21/68 (30%), Positives = 26/68 (38%), Gaps = 4/68 (5%)
Query: 3 AGRGPSQGSGSSCELAPISNDASKGWASGRAEGGTTPAFPRAQVSQWSQVKKEVKTGVAA 62
A G G+ S E A I++ G ASG E GT A W+ KE +
Sbjct: 322 ASGGEEAGTASGGEEAGIASGGEAGTASGGEEAGTASGGDEA----WTTSGKEEADLLGV 377
Query: 63 RVRRQGGV 70
R G V
Sbjct: 378 RQTEYGAV 385
>gi|229577391 pyridine nucleotide-disulphide oxidoreductase domain 2
[Homo sapiens]
Length = 581
Score = 26.6 bits (57), Expect = 7.6
Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 4/50 (8%)
Query: 70 VLQGGFEEVKEPVRGVIKVDRACQGGSISGETTPGSGCGYKHRMLIGREG 119
VL FE EP++ + D G+++ TPGSG H ++ G EG
Sbjct: 230 VLDQWFES--EPLKATLATDAVI--GAMTSPHTPGSGYVLLHHVMGGLEG 275
>gi|169201839 PREDICTED: similar to hCG2038970 [Homo sapiens]
Length = 915
Score = 26.6 bits (57), Expect = 7.6
Identities = 18/51 (35%), Positives = 22/51 (43%), Gaps = 6/51 (11%)
Query: 1 MNAGRGPSQGSGSSCELAPISNDASKGWASGRAEGGTTPAFPRAQVSQWSQ 51
MN G P + SG S S S+G + G + PR QVS W Q
Sbjct: 112 MNDGSLPVRSSGLS------SGTGSEGGSWGHMTAASEGRAPRIQVSSWWQ 156
>gi|169201482 PREDICTED: similar to hCG2038970 [Homo sapiens]
Length = 821
Score = 26.6 bits (57), Expect = 7.6
Identities = 18/51 (35%), Positives = 22/51 (43%), Gaps = 6/51 (11%)
Query: 1 MNAGRGPSQGSGSSCELAPISNDASKGWASGRAEGGTTPAFPRAQVSQWSQ 51
MN G P + SG S S S+G + G + PR QVS W Q
Sbjct: 112 MNDGSLPVRSSGLS------SGTGSEGGSWGHMTAASEGRAPRIQVSSWWQ 156
>gi|239744229 PREDICTED: similar to hCG2038970 [Homo sapiens]
Length = 904
Score = 26.6 bits (57), Expect = 7.6
Identities = 18/51 (35%), Positives = 22/51 (43%), Gaps = 6/51 (11%)
Query: 1 MNAGRGPSQGSGSSCELAPISNDASKGWASGRAEGGTTPAFPRAQVSQWSQ 51
MN G P + SG S S S+G + G + PR QVS W Q
Sbjct: 112 MNDGSLPVRSSGLS------SGTGSEGGSWGHMTAASEGRAPRIQVSSWWQ 156
>gi|108389176 tRNA splicing endonuclease 54 homolog [Homo sapiens]
Length = 526
Score = 26.6 bits (57), Expect = 7.6
Identities = 20/47 (42%), Positives = 21/47 (44%), Gaps = 7/47 (14%)
Query: 1 MNAGRGPSQGSGSSCELAPISNDASKG----WASGRAEGGTTPAFPR 43
M GP Q GS L P A +G W SGRAE G T A R
Sbjct: 251 MKGPGGPFQLLGS---LGPSPGPAREGVGCSWESGRAENGVTGAGKR 294
>gi|213972636 tumor protein p53 binding protein 1 isoform 1 [Homo
sapiens]
Length = 1977
Score = 26.6 bits (57), Expect = 7.6
Identities = 14/32 (43%), Positives = 19/32 (59%)
Query: 7 PSQGSGSSCELAPISNDASKGWASGRAEGGTT 38
PSQ GSS +L IS+ +SK + R GT+
Sbjct: 1294 PSQTGGSSGDLGDISSFSSKASSLHRTSSGTS 1325
>gi|213972634 tumor protein p53 binding protein 1 isoform 2 [Homo
sapiens]
Length = 1975
Score = 26.6 bits (57), Expect = 7.6
Identities = 14/32 (43%), Positives = 19/32 (59%)
Query: 7 PSQGSGSSCELAPISNDASKGWASGRAEGGTT 38
PSQ GSS +L IS+ +SK + R GT+
Sbjct: 1294 PSQTGGSSGDLGDISSFSSKASSLHRTSSGTS 1325
>gi|5032189 tumor protein p53 binding protein 1 isoform 3 [Homo
sapiens]
Length = 1972
Score = 26.6 bits (57), Expect = 7.6
Identities = 14/32 (43%), Positives = 19/32 (59%)
Query: 7 PSQGSGSSCELAPISNDASKGWASGRAEGGTT 38
PSQ GSS +L IS+ +SK + R GT+
Sbjct: 1289 PSQTGGSSGDLGDISSFSSKASSLHRTSSGTS 1320
>gi|54607035 integrin beta 4 isoform 1 precursor [Homo sapiens]
Length = 1822
Score = 26.6 bits (57), Expect = 7.6
Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 4/49 (8%)
Query: 85 VIKVDRACQGGSISGETTPGSGCGYKHRMLIGREGFYRQVRVSLVAELL 133
V++ Q S+S +T GCG+K L+G E R+V L EL+
Sbjct: 1353 VLRSPSGSQRPSVSDDT----GCGWKFEPLLGEELDLRRVTWRLPPELI 1397
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.315 0.133 0.405
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,205,546
Number of Sequences: 37866
Number of extensions: 276673
Number of successful extensions: 563
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 26
Number of HSP's that attempted gapping in prelim test: 542
Number of HSP's gapped (non-prelim): 48
length of query: 143
length of database: 18,247,518
effective HSP length: 92
effective length of query: 51
effective length of database: 14,763,846
effective search space: 752956146
effective search space used: 752956146
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 56 (26.2 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.