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Search of human proteins with 239756303
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239756303 PREDICTED: hypothetical protein [Homo sapiens]
(232 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239756303 PREDICTED: hypothetical protein [Homo sapiens] 483 e-137
gi|169206489 PREDICTED: hypothetical protein [Homo sapiens] 45 5e-05
gi|169205942 PREDICTED: hypothetical protein [Homo sapiens] 45 5e-05
gi|239755634 PREDICTED: hypothetical protein [Homo sapiens] 44 2e-04
gi|239744429 PREDICTED: hypothetical protein XP_002343157 [Homo ... 44 2e-04
gi|169168202 PREDICTED: hypothetical protein [Homo sapiens] 43 2e-04
gi|169167967 PREDICTED: hypothetical protein [Homo sapiens] 42 3e-04
gi|169167681 PREDICTED: hypothetical protein [Homo sapiens] 42 3e-04
gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens] 42 4e-04
gi|239750121 PREDICTED: hypothetical protein XP_002347280 [Homo ... 39 0.005
gi|239749251 PREDICTED: similar to hCG2042508 [Homo sapiens] 39 0.005
gi|239743343 PREDICTED: similar to hCG2042508 [Homo sapiens] 39 0.005
gi|239509031 PREDICTED: similar to hCG2042508 [Homo sapiens] 39 0.005
gi|239754110 PREDICTED: hypothetical protein XP_002345881 [Homo ... 37 0.011
gi|239755439 PREDICTED: NK1 homeobox 2 [Homo sapiens] 37 0.014
gi|239750574 PREDICTED: hypothetical protein [Homo sapiens] 37 0.014
gi|239749920 PREDICTED: NK1 homeobox 2 [Homo sapiens] 37 0.014
gi|169205732 PREDICTED: hypothetical protein [Homo sapiens] 37 0.014
gi|239744223 PREDICTED: NK1 homeobox 2 [Homo sapiens] 37 0.014
gi|239741982 PREDICTED: hypothetical protein [Homo sapiens] 37 0.014
gi|239758151 PREDICTED: hypothetical protein XP_002346314 [Homo ... 37 0.019
gi|188536004 zinc finger protein 469 [Homo sapiens] 37 0.019
gi|239748084 PREDICTED: hypothetical protein [Homo sapiens] 36 0.025
gi|158854042 hypothetical protein LOC222183 [Homo sapiens] 36 0.025
gi|239758013 PREDICTED: hypothetical protein [Homo sapiens] 36 0.032
gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens] 36 0.032
gi|239753576 PREDICTED: hypothetical protein [Homo sapiens] 35 0.042
gi|239753314 PREDICTED: similar to RIKEN cDNA C230030N03 [Homo s... 35 0.042
gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens] 35 0.055
gi|169214061 PREDICTED: hypothetical protein [Homo sapiens] 35 0.055
>gi|239756303 PREDICTED: hypothetical protein [Homo sapiens]
Length = 232
Score = 483 bits (1243), Expect = e-137
Identities = 232/232 (100%), Positives = 232/232 (100%)
Query: 1 MRGREEGRGDQERTRRHRACPGCRGSEVSPGEGAPGSGQRPAGTSGGRKVLELSERYGEG 60
MRGREEGRGDQERTRRHRACPGCRGSEVSPGEGAPGSGQRPAGTSGGRKVLELSERYGEG
Sbjct: 1 MRGREEGRGDQERTRRHRACPGCRGSEVSPGEGAPGSGQRPAGTSGGRKVLELSERYGEG 60
Query: 61 LCRRVGMRRQQGKDSVWGRYSGRCPPLVSGLGEGPRLEGTQFKGRVFCPTRRHRARRAQA 120
LCRRVGMRRQQGKDSVWGRYSGRCPPLVSGLGEGPRLEGTQFKGRVFCPTRRHRARRAQA
Sbjct: 61 LCRRVGMRRQQGKDSVWGRYSGRCPPLVSGLGEGPRLEGTQFKGRVFCPTRRHRARRAQA 120
Query: 121 ELRPPEAARTGGGCGERRRRKAAATLLLRNQNARRRNPGSRRAGPASRGAMLEKGSSSRE 180
ELRPPEAARTGGGCGERRRRKAAATLLLRNQNARRRNPGSRRAGPASRGAMLEKGSSSRE
Sbjct: 121 ELRPPEAARTGGGCGERRRRKAAATLLLRNQNARRRNPGSRRAGPASRGAMLEKGSSSRE 180
Query: 181 DAPPAWEAEEPARGAWRVASRGETGLARSGDPHRPQSARGDPVTALPFPDPA 232
DAPPAWEAEEPARGAWRVASRGETGLARSGDPHRPQSARGDPVTALPFPDPA
Sbjct: 181 DAPPAWEAEEPARGAWRVASRGETGLARSGDPHRPQSARGDPVTALPFPDPA 232
>gi|169206489 PREDICTED: hypothetical protein [Homo sapiens]
Length = 564
Score = 45.1 bits (105), Expect = 5e-05
Identities = 65/253 (25%), Positives = 92/253 (36%), Gaps = 55/253 (21%)
Query: 22 GCRGSEVSPGEGAPGSGQRPAGTSGGRKVLELSERYGEGLC----RRVGMRRQQGKDSVW 77
G RGS P G PG G+ + +G R+ LS LC R+ RR QG S W
Sbjct: 155 GGRGSHSGPRAGTPGGGR--SSRAGARRKTPLS------LCPLKLRKGSSRRCQGLGSSW 206
Query: 78 GRYSGRCPPLV------SGLGEGPRLEGTQFK--------------GRVFCPTRRHRARR 117
G PP G ++ G++ + G V R H +
Sbjct: 207 GGSGTPPPPRALWNRHGGAAGARAQVRGSEKRACPGSTLPPSSVLAGCVGTRARGHGGVQ 266
Query: 118 AQAELRPPEAARTGGG-CGERRRR-------KAAATLLLRNQNARRRNP----------- 158
Q P + +GG GER R KAA L +P
Sbjct: 267 RQRFSAPSSHSTSGGRPTGERSSREPLLDPSKAARASALPTARVAHASPPSLAAAQWRLG 326
Query: 159 GSRRAGPASRGAMLEKGSSSREDAPPAWEAEEPARGA--WRVASR--GETGLARSGDPHR 214
G +R +GA+ S++ E+ P + A EPA+G+ W A R G +G P R
Sbjct: 327 GGKRKPTVLKGAVRTDLSTAEEEDPRSGRALEPAQGSELWARAERHGGSSGARTLPTPSR 386
Query: 215 PQSARGDPVTALP 227
+ + P + P
Sbjct: 387 ARPGKPAPRGSAP 399
Score = 32.3 bits (72), Expect = 0.35
Identities = 55/203 (27%), Positives = 70/203 (34%), Gaps = 44/203 (21%)
Query: 2 RGREEGRGDQ--ERTRRHRACPGCRG----SEVSPGEGAPGSGQRPAGTSGGRKVLELSE 55
R E +G + R RH G R S PG+ AP PA GG L++
Sbjct: 355 RALEPAQGSELWARAERHGGSSGARTLPTPSRARPGKPAPRGSAPPARLRGGGGGSGLTQ 414
Query: 56 RYGEGLCRRVGMRRQQGKDSVWGRYSGRCP-------------PLVSGLGEGP------R 96
G G R G+ G ++ R R P PL S + P R
Sbjct: 415 LVGSG--RGSGVTHSVGTHALATRRGSRAPRPVGVLRGVPHFRPLSSPAPQSPPRSPSVR 472
Query: 97 LEGTQF-KGRVFCP-TRRHRARRAQAELRPPEAARTGG----GCG-----------ERRR 139
G + GR+ CP R A A L P A GG GCG ER +
Sbjct: 473 AFGPRLGAGRLSCPQAPRAAALPGIAVLAPSPAHDWGGQRCEGCGGGSQPFAGRRAERGK 532
Query: 140 RKAAATLLLRNQNARRRNPGSRR 162
R A + + RR G+ R
Sbjct: 533 RGAGVPWRTQTLSLLRRCSGALR 555
>gi|169205942 PREDICTED: hypothetical protein [Homo sapiens]
Length = 564
Score = 45.1 bits (105), Expect = 5e-05
Identities = 65/253 (25%), Positives = 92/253 (36%), Gaps = 55/253 (21%)
Query: 22 GCRGSEVSPGEGAPGSGQRPAGTSGGRKVLELSERYGEGLC----RRVGMRRQQGKDSVW 77
G RGS P G PG G+ + +G R+ LS LC R+ RR QG S W
Sbjct: 155 GGRGSHSGPRAGTPGGGR--SSRAGARRKTPLS------LCPLKLRKGSSRRCQGLGSSW 206
Query: 78 GRYSGRCPPLV------SGLGEGPRLEGTQFK--------------GRVFCPTRRHRARR 117
G PP G ++ G++ + G V R H +
Sbjct: 207 GGSGTPPPPRALWNRHGGAAGARAQVRGSEKRACPGSTLPPSSVLAGCVGTRARGHGGVQ 266
Query: 118 AQAELRPPEAARTGGG-CGERRRR-------KAAATLLLRNQNARRRNP----------- 158
Q P + +GG GER R KAA L +P
Sbjct: 267 RQRFSAPSSHSTSGGRPTGERSSREPLLDPSKAARASALPTARVAHASPPSLAAAQWRLG 326
Query: 159 GSRRAGPASRGAMLEKGSSSREDAPPAWEAEEPARGA--WRVASR--GETGLARSGDPHR 214
G +R +GA+ S++ E+ P + A EPA+G+ W A R G +G P R
Sbjct: 327 GGKRKPTVLKGAVRTDLSTAEEEDPRSGRALEPAQGSELWARAERHGGSSGARTLPTPSR 386
Query: 215 PQSARGDPVTALP 227
+ + P + P
Sbjct: 387 ARPGKPAPRGSAP 399
Score = 32.3 bits (72), Expect = 0.35
Identities = 55/203 (27%), Positives = 70/203 (34%), Gaps = 44/203 (21%)
Query: 2 RGREEGRGDQ--ERTRRHRACPGCRG----SEVSPGEGAPGSGQRPAGTSGGRKVLELSE 55
R E +G + R RH G R S PG+ AP PA GG L++
Sbjct: 355 RALEPAQGSELWARAERHGGSSGARTLPTPSRARPGKPAPRGSAPPARLRGGGGGSGLTQ 414
Query: 56 RYGEGLCRRVGMRRQQGKDSVWGRYSGRCP-------------PLVSGLGEGP------R 96
G G R G+ G ++ R R P PL S + P R
Sbjct: 415 LVGSG--RGSGVTHSVGTHALATRRGSRAPRPVGVLRGVPHFRPLSSPAPQSPPRSPSVR 472
Query: 97 LEGTQF-KGRVFCP-TRRHRARRAQAELRPPEAARTGG----GCG-----------ERRR 139
G + GR+ CP R A A L P A GG GCG ER +
Sbjct: 473 AFGPRLGAGRLSCPQAPRAAALPGIAVLAPSPAHDWGGQRCEGCGGGSQPFAGRRAERGK 532
Query: 140 RKAAATLLLRNQNARRRNPGSRR 162
R A + + RR G+ R
Sbjct: 533 RGAGVPWRTQTLSLLRRCSGALR 555
>gi|239755634 PREDICTED: hypothetical protein [Homo sapiens]
Length = 449
Score = 43.5 bits (101), Expect = 2e-04
Identities = 55/230 (23%), Positives = 80/230 (34%), Gaps = 29/230 (12%)
Query: 1 MRGREEGRGDQERTRRHRACPGCRGSEVSPGEGAPGSGQRPAGTSGGRKVLELSERYGEG 60
+RGR E R + + R GCR S AP P + +LE
Sbjct: 48 VRGRAERRPARGKHVRGGGVGGCRDSRAGGSHAAPSGLGVPGDSESALGLLEPGPPKSLR 107
Query: 61 LCRRVGMRRQQGKDSVWGRYSGRCPPLVSGLGEGPRLEGTQFKGRVFCPTRRHRARRAQA 120
+ +G + G + +G+ PP S + P +RR ++R ++
Sbjct: 108 ISVTLGQAPRAGPSAASSAAAGKTPP--SRVPAEP-------------SSRRGASKRRES 152
Query: 121 ELRPPEAARTGGGCG----------ERRRRKAAATLLLRNQNARRRNPGSRRAGPASRGA 170
E R+G GC + RR ++ ARR PG + S G
Sbjct: 153 WRTDGERLRSGRGCAGAARGPDASLDTRREGWPRAAVVGRHEARRLKPGVSVSSSLSPGP 212
Query: 171 MLEKGSSSRED-APPAWEAEEPARGAWRVASRGETGLARSGDP---HRPQ 216
L++ SS E A AE AR + R E G HRPQ
Sbjct: 213 PLQRSSSLNETLRSAAAHAESSARECGKRTQRPEQRFLCRGSSFCGHRPQ 262
>gi|239744429 PREDICTED: hypothetical protein XP_002343157 [Homo
sapiens]
Length = 449
Score = 43.5 bits (101), Expect = 2e-04
Identities = 55/230 (23%), Positives = 80/230 (34%), Gaps = 29/230 (12%)
Query: 1 MRGREEGRGDQERTRRHRACPGCRGSEVSPGEGAPGSGQRPAGTSGGRKVLELSERYGEG 60
+RGR E R + + R GCR S AP P + +LE
Sbjct: 48 VRGRAERRPARGKHVRGGGVGGCRDSRAGGSHAAPSGLGVPGDSESALGLLEPGPPKSLR 107
Query: 61 LCRRVGMRRQQGKDSVWGRYSGRCPPLVSGLGEGPRLEGTQFKGRVFCPTRRHRARRAQA 120
+ +G + G + +G+ PP S + P +RR ++R ++
Sbjct: 108 ISVTLGQAPRAGPSAASSAAAGKTPP--SRVPAEP-------------SSRRGASKRRES 152
Query: 121 ELRPPEAARTGGGCG----------ERRRRKAAATLLLRNQNARRRNPGSRRAGPASRGA 170
E R+G GC + RR ++ ARR PG + S G
Sbjct: 153 WRTDGERLRSGRGCAGAARGPDASLDTRREGWPRAAVVGRHEARRLKPGVSVSSSLSPGP 212
Query: 171 MLEKGSSSRED-APPAWEAEEPARGAWRVASRGETGLARSGDP---HRPQ 216
L++ SS E A AE AR + R E G HRPQ
Sbjct: 213 PLQRSSSLNETLRSAAAHAESSARECGKRTQRPEQRFLCRGSSFCGHRPQ 262
>gi|169168202 PREDICTED: hypothetical protein [Homo sapiens]
Length = 460
Score = 43.1 bits (100), Expect = 2e-04
Identities = 59/200 (29%), Positives = 73/200 (36%), Gaps = 38/200 (19%)
Query: 35 PGSGQRPAGTSGGRKVLELSERYGEGLCRRVGMRRQQGKDSVWGRYSGRCPPLVSGLGEG 94
PG P + GGR+ L G GL + R Q+ + G S R S G
Sbjct: 153 PGKTSAPRPSPGGRRGRPLGAARGTGLNPGLSPRLQEPR----GHQSARRTDTASRAGWA 208
Query: 95 PRLEGTQFKGRVFCPTRRHR--ARRAQAELRPPEAARTGGGCGERRRRKAAATLLLRNQN 152
R P+RR A R LR P+A + G + +R A A +L N
Sbjct: 209 TRR----------APSRRRNFGAPRGSRRLR-PDAGKFPEASGGKGQRAAGAERVLNN-- 255
Query: 153 ARRRNPGSRRAGPASRGAMLEKGSSSREDAPPAWEAEEPARGAWRVASRGETGLARSGDP 212
R P SR G A G + PP W E G SR + RSG
Sbjct: 256 --GRGPRSRLPGLA--GGV----------EPPGWSRERAGAG----LSRDSPQVPRSGSW 297
Query: 213 HRPQSARGDP-VTALPFPDP 231
RP +G P V AL P P
Sbjct: 298 ARPCREQGHPAVLALQSPAP 317
>gi|169167967 PREDICTED: hypothetical protein [Homo sapiens]
Length = 460
Score = 42.4 bits (98), Expect = 3e-04
Identities = 59/200 (29%), Positives = 73/200 (36%), Gaps = 38/200 (19%)
Query: 35 PGSGQRPAGTSGGRKVLELSERYGEGLCRRVGMRRQQGKDSVWGRYSGRCPPLVSGLGEG 94
PG P + GGR+ L G GL + R Q+ + G S R S G
Sbjct: 153 PGKTSAPRPSPGGRRGRPLGAARGTGLNPGLSPRLQEPR----GHQSARRTDTASRAGWA 208
Query: 95 PRLEGTQFKGRVFCPTRRHR--ARRAQAELRPPEAARTGGGCGERRRRKAAATLLLRNQN 152
R P+RR A R LR P+A + G + +R A A +L N
Sbjct: 209 TRR----------APSRRRNFGAPRGSRRLR-PDAGKFPEASGGKGQRAAGAERVLDN-- 255
Query: 153 ARRRNPGSRRAGPASRGAMLEKGSSSREDAPPAWEAEEPARGAWRVASRGETGLARSGDP 212
R P SR G A G + PP W E G SR + RSG
Sbjct: 256 --GRGPRSRLPGLA--GGV----------EPPGWSRERAGAG----LSRDSPQVPRSGSW 297
Query: 213 HRPQSARGDP-VTALPFPDP 231
RP +G P V AL P P
Sbjct: 298 ARPCREQGHPAVLALQSPAP 317
>gi|169167681 PREDICTED: hypothetical protein [Homo sapiens]
Length = 460
Score = 42.4 bits (98), Expect = 3e-04
Identities = 59/200 (29%), Positives = 73/200 (36%), Gaps = 38/200 (19%)
Query: 35 PGSGQRPAGTSGGRKVLELSERYGEGLCRRVGMRRQQGKDSVWGRYSGRCPPLVSGLGEG 94
PG P + GGR+ L G GL + R Q+ + G S R S G
Sbjct: 153 PGKTSAPRPSPGGRRGRPLGAARGTGLNPGLSPRLQEPR----GHQSARRTDTASRAGWA 208
Query: 95 PRLEGTQFKGRVFCPTRRHR--ARRAQAELRPPEAARTGGGCGERRRRKAAATLLLRNQN 152
R P+RR A R LR P+A + G + +R A A +L N
Sbjct: 209 TRR----------APSRRRNFGAPRGSRRLR-PDAGKFPEASGGKGQRAAGAERVLDN-- 255
Query: 153 ARRRNPGSRRAGPASRGAMLEKGSSSREDAPPAWEAEEPARGAWRVASRGETGLARSGDP 212
R P SR G A G + PP W E G SR + RSG
Sbjct: 256 --GRGPRSRLPGLA--GGV----------EPPGWSRERAGAG----LSRDSPQVPRSGSW 297
Query: 213 HRPQSARGDP-VTALPFPDP 231
RP +G P V AL P P
Sbjct: 298 ARPCREQGHPAVLALQSPAP 317
>gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens]
Length = 1464
Score = 42.0 bits (97), Expect = 4e-04
Identities = 60/205 (29%), Positives = 72/205 (35%), Gaps = 52/205 (25%)
Query: 21 PGCRGSEVSPGE----GAPGSGQRPAGTSGGRKVLELSERYGE-GLCRRVGMRRQQGKDS 75
PG G + SPG GAPG+ P G +G R V+ L + GE G G + GK
Sbjct: 928 PGPAGEKGSPGADGPAGAPGT-PGPQGIAGQRGVVGLPGQRGERGFPGLPGPSGEPGKQG 986
Query: 76 VWGRYSGRCPPLVSGLGEGPRLEGTQFKGRVFCPTRRHRARRAQAELRPPEAARTGGGCG 135
G R PP GP + PP A G G
Sbjct: 987 PSGASGERGPP-------GP--------------------------MGPPGLA---GPPG 1010
Query: 136 ERRRRKAAATLLLRNQNARRRNPGSRRAGPASRGAMLEKGSSSREDAPPAWEAEEPARGA 195
E R A +PG R P ++G E G + AP A A P A
Sbjct: 1011 ESGREGAPGA---------EGSPG-RDGSPGAKGDRGETGPAGPPGAPGAPGAPGPVGPA 1060
Query: 196 WRVASRGETGLARSGDPHRPQSARG 220
+ RGETG A P P ARG
Sbjct: 1061 GKSGDRGETGPAGPAGPVGPVGARG 1085
>gi|239750121 PREDICTED: hypothetical protein XP_002347280 [Homo
sapiens]
Length = 402
Score = 38.5 bits (88), Expect = 0.005
Identities = 43/190 (22%), Positives = 67/190 (35%), Gaps = 25/190 (13%)
Query: 1 MRGREEGRGDQERTRRHRACPGCRGSEVSPGEGAPGSGQRPAGTSGGRKVLELSERYGEG 60
+RGR E R + + R GCR S AP P + +LE
Sbjct: 48 VRGRAERRPARGKHVRGGGVGGCRDSRAGGSHAAPSGLGVPGDSESALGLLEPGPPKSLR 107
Query: 61 LCRRVGMRRQQGKDSVWGRYSGRCPPLVSGLGEGPRLEGTQFKGRVFCPTRRHRARRAQA 120
+ +G + G + +G+ PP S + P +RR ++R ++
Sbjct: 108 ISVTLGQAPRAGPSAASSAAAGKTPP--SRVPAEP-------------SSRRGASKRRES 152
Query: 121 ELRPPEAARTGGGCG----------ERRRRKAAATLLLRNQNARRRNPGSRRAGPASRGA 170
E R+G GC + RR ++ ARR PG + S G
Sbjct: 153 WRTDGERLRSGRGCAGAARGPDASLDTRREGWPRAAVVGRHEARRLKPGVSVSSSLSPGP 212
Query: 171 MLEKGSSSRE 180
L++ SS E
Sbjct: 213 PLQRSSSLNE 222
>gi|239749251 PREDICTED: similar to hCG2042508 [Homo sapiens]
Length = 460
Score = 38.5 bits (88), Expect = 0.005
Identities = 46/151 (30%), Positives = 50/151 (33%), Gaps = 26/151 (17%)
Query: 2 RGREEGRGDQERTRRHRACPGCRGSEVSPGEGAPGSGQRPAGTSGGRKVLELSERYGEGL 61
RGR E RG H PG S P G+ P T+G R + E
Sbjct: 230 RGRAESRGSGPAQPAHLPLPGPAHSPAPPAPELR-EGRAPGSTAGRRPRPREPQAAEESG 288
Query: 62 CRRVGMRRQQGKDSVWGRYSGRCPPLVSGLGE-------------GPRLEGTQ-FKGRVF 107
C VG+RR R PP SG GE G EGT G
Sbjct: 289 CATVGLRRGD-----CDRAGSSQPPATSGNGERCRFCRRRRRRGGGGEGEGTHATHGPAS 343
Query: 108 CPTRRHRARRAQAELRPPEAARTGGGCGERR 138
P RRH A L R G G G RR
Sbjct: 344 PPGRRHDEEVGAAVL------RAGSGEGSRR 368
>gi|239743343 PREDICTED: similar to hCG2042508 [Homo sapiens]
Length = 460
Score = 38.5 bits (88), Expect = 0.005
Identities = 46/151 (30%), Positives = 50/151 (33%), Gaps = 26/151 (17%)
Query: 2 RGREEGRGDQERTRRHRACPGCRGSEVSPGEGAPGSGQRPAGTSGGRKVLELSERYGEGL 61
RGR E RG H PG S P G+ P T+G R + E
Sbjct: 230 RGRAESRGSGPAQPAHLPLPGPAHSPAPPAPELR-EGRAPGSTAGRRPRPREPQAAEESG 288
Query: 62 CRRVGMRRQQGKDSVWGRYSGRCPPLVSGLGE-------------GPRLEGTQ-FKGRVF 107
C VG+RR R PP SG GE G EGT G
Sbjct: 289 CATVGLRRGD-----CDRAGSSQPPATSGNGERCRFCRRRRRRGGGGEGEGTHATHGPAS 343
Query: 108 CPTRRHRARRAQAELRPPEAARTGGGCGERR 138
P RRH A L R G G G RR
Sbjct: 344 PPGRRHDEEVGAAVL------RAGSGEGSRR 368
>gi|239509031 PREDICTED: similar to hCG2042508 [Homo sapiens]
Length = 460
Score = 38.5 bits (88), Expect = 0.005
Identities = 46/151 (30%), Positives = 50/151 (33%), Gaps = 26/151 (17%)
Query: 2 RGREEGRGDQERTRRHRACPGCRGSEVSPGEGAPGSGQRPAGTSGGRKVLELSERYGEGL 61
RGR E RG H PG S P G+ P T+G R + E
Sbjct: 230 RGRAESRGSGPAQPAHLPLPGPAHSPAPPAPELR-EGRAPGSTAGRRPRPREPQAAEESG 288
Query: 62 CRRVGMRRQQGKDSVWGRYSGRCPPLVSGLGE-------------GPRLEGTQ-FKGRVF 107
C VG+RR R PP SG GE G EGT G
Sbjct: 289 CATVGLRRGD-----CDRAGSSQPPATSGNGERCRFCRRRRRRGGGGEGEGTHATHGPAS 343
Query: 108 CPTRRHRARRAQAELRPPEAARTGGGCGERR 138
P RRH A L R G G G RR
Sbjct: 344 PPGRRHDEEVGAAVL------RAGSGEGSRR 368
>gi|239754110 PREDICTED: hypothetical protein XP_002345881 [Homo
sapiens]
Length = 284
Score = 37.4 bits (85), Expect = 0.011
Identities = 29/83 (34%), Positives = 40/83 (48%), Gaps = 5/83 (6%)
Query: 128 ARTGGGCGERRRRKAAATL----LLRNQNARRRNPGSRRAGPASRGAMLEKGSSS-REDA 182
+R G G GER +A A LR + RRR RRA S A LE+ +S RE+
Sbjct: 188 SRRGRGGGERGGPRAQAVRRRLSALRGRGRRRRLKRLRRAQETSGAAALERACASVREEL 247
Query: 183 PPAWEAEEPARGAWRVASRGETG 205
P + EP + A + +S +G
Sbjct: 248 LPVLQFSEPGKRAVQTSSGSHSG 270
>gi|239755439 PREDICTED: NK1 homeobox 2 [Homo sapiens]
Length = 332
Score = 37.0 bits (84), Expect = 0.014
Identities = 37/124 (29%), Positives = 52/124 (41%), Gaps = 10/124 (8%)
Query: 105 RVFCPTRRHRARRAQAELRPPEAARTGGGCGERRRRKA-----AATLLLRNQNARRRNPG 159
R P R R A+ L EA + R+ + AA+LL R + +
Sbjct: 33 RAALPAVRPAPREARKSLAEVEAGKDASSRDPVRQLETPGQGFAASLLTRQAHPHHSSDA 92
Query: 160 SRRAGPASRGAMLEKGSSSREDAPPAWEAEEPARGAWRV-ASRGETGLARSGDPHRPQSA 218
AGP + A +GS + E+ +AE+P R R A+R GLARS D A
Sbjct: 93 RDAAGPGAGQASPLEGSEAEEEE----DAEDPRRPRLRERAARLLPGLARSPDAPAGALA 148
Query: 219 RGDP 222
G+P
Sbjct: 149 SGEP 152
>gi|239750574 PREDICTED: hypothetical protein [Homo sapiens]
Length = 1297
Score = 37.0 bits (84), Expect = 0.014
Identities = 66/270 (24%), Positives = 87/270 (32%), Gaps = 54/270 (20%)
Query: 2 RGREEGRGDQERTRR------------------HRACPGCRGSEVS-------------P 30
RGR GR + R R HR PG RG V P
Sbjct: 698 RGRGAGRAEAARAAREGGPHQGVFIQRGRGGLGHRPLPGWRGQGVGPLAQPSVQVLGRVP 757
Query: 31 GEGAPGSGQRPAGTSGGRKVLELSER---YGEGLCR----RVGMRRQQGKDSVWG---RY 80
+ A G+ G G +EL+ G G R RV +G W
Sbjct: 758 RDPAVGAATVAQGPVHGHVPVELTAAAAVSGRGRLRDGLGRVASVAAEGAQVAWAGAVLV 817
Query: 81 SGRCPPLVSGLGEGPRLEGTQFKGRVFCPTRRHRAR--------RAQAELRPPEAARTGG 132
G + G G G G V R+ R R RA A A GG
Sbjct: 818 QGHEAGVAGGARGGGAAAGGPLAGAVVQRMRQRRVRAGRRRVGARAVAAAGRQGAGAGGG 877
Query: 133 GCGERRRRKAAATLLLRNQNARRRNPGSRRAGPASRGAMLEKGSSSREDA--PPAWEAEE 190
G R A +L R ++R+ A A++G +G + R A P+
Sbjct: 878 GRRVRHGHGHGAAVLQRAPCRQQRHLAPAAAAAAAQGVRAAQGRAHRPGAQGAPSHRHRP 937
Query: 191 PARGAWRVASRGETGLARSGDPHRPQSARG 220
ARG SR +A +G H ++A G
Sbjct: 938 GARGR---RSRRRAAVALAGGAHPARAALG 964
Score = 33.5 bits (75), Expect = 0.16
Identities = 44/163 (26%), Positives = 53/163 (32%), Gaps = 21/163 (12%)
Query: 24 RGSEVSPGEGAPGSGQRPAGTSGGRKVLELSERYGEGLCRRVGMRRQQGKDSVWGRYSGR 83
+G E GA G G G G V + +R RRVG R G
Sbjct: 818 QGHEAGVAGGARGGGAAAGGPLAGAVVQRMRQRRVRAGRRRVGARAVAAAGRQGAGAGGG 877
Query: 84 CPPLVSGLGEGPRLEGTQFKGRVFCPTRRHRA-----------RRAQAELRPPEAA---- 128
+ G G G + R C +RH A R AQ P A
Sbjct: 878 GRRVRHGHGHGAAV-----LQRAPCRQQRHLAPAAAAAAAQGVRAAQGRAHRPGAQGAPS 932
Query: 129 -RTGGGCGERRRRKAAATLLLRNQNARRRNPGSRRAGPASRGA 170
R G RR R+ AA L + R G RR G + GA
Sbjct: 933 HRHRPGARGRRSRRRAAVALAGGAHPARAALGRRRGGGQAVGA 975
>gi|239749920 PREDICTED: NK1 homeobox 2 [Homo sapiens]
Length = 332
Score = 37.0 bits (84), Expect = 0.014
Identities = 37/124 (29%), Positives = 52/124 (41%), Gaps = 10/124 (8%)
Query: 105 RVFCPTRRHRARRAQAELRPPEAARTGGGCGERRRRKA-----AATLLLRNQNARRRNPG 159
R P R R A+ L EA + R+ + AA+LL R + +
Sbjct: 33 RAALPAVRPAPREARKSLAEVEAGKDASSRDPVRQLETPGQGFAASLLTRQAHPHHSSDA 92
Query: 160 SRRAGPASRGAMLEKGSSSREDAPPAWEAEEPARGAWRV-ASRGETGLARSGDPHRPQSA 218
AGP + A +GS + E+ +AE+P R R A+R GLARS D A
Sbjct: 93 RDAAGPGAGQASPLEGSEAEEEE----DAEDPRRPRLRERAARLLPGLARSPDAPAGALA 148
Query: 219 RGDP 222
G+P
Sbjct: 149 SGEP 152
>gi|169205732 PREDICTED: hypothetical protein [Homo sapiens]
Length = 1297
Score = 37.0 bits (84), Expect = 0.014
Identities = 66/270 (24%), Positives = 87/270 (32%), Gaps = 54/270 (20%)
Query: 2 RGREEGRGDQERTRR------------------HRACPGCRGSEVS-------------P 30
RGR GR + R R HR PG RG V P
Sbjct: 698 RGRGAGRAEAARAAREGGPHQGVFIQRGRGGLGHRPLPGWRGQGVGPLAQPSVQVLGRVP 757
Query: 31 GEGAPGSGQRPAGTSGGRKVLELSER---YGEGLCR----RVGMRRQQGKDSVWG---RY 80
+ A G+ G G +EL+ G G R RV +G W
Sbjct: 758 RDPAVGAATVAQGPVHGHVPVELTAAAAVSGRGRLRDGLGRVASVAAEGAQVAWAGAVLV 817
Query: 81 SGRCPPLVSGLGEGPRLEGTQFKGRVFCPTRRHRAR--------RAQAELRPPEAARTGG 132
G + G G G G V R+ R R RA A A GG
Sbjct: 818 QGHEAGVAGGARGGGAAAGGPLAGAVVQRMRQRRVRAGRRRVGARAVAAAGRQGAGAGGG 877
Query: 133 GCGERRRRKAAATLLLRNQNARRRNPGSRRAGPASRGAMLEKGSSSREDA--PPAWEAEE 190
G R A +L R ++R+ A A++G +G + R A P+
Sbjct: 878 GRRVRHGHGHGAAVLQRAPCRQQRHLAPAAAAAAAQGVRAAQGRAHRPGAQGAPSHRHRP 937
Query: 191 PARGAWRVASRGETGLARSGDPHRPQSARG 220
ARG SR +A +G H ++A G
Sbjct: 938 GARGR---RSRRRAAVALAGGAHPARAALG 964
Score = 33.5 bits (75), Expect = 0.16
Identities = 44/163 (26%), Positives = 53/163 (32%), Gaps = 21/163 (12%)
Query: 24 RGSEVSPGEGAPGSGQRPAGTSGGRKVLELSERYGEGLCRRVGMRRQQGKDSVWGRYSGR 83
+G E GA G G G G V + +R RRVG R G
Sbjct: 818 QGHEAGVAGGARGGGAAAGGPLAGAVVQRMRQRRVRAGRRRVGARAVAAAGRQGAGAGGG 877
Query: 84 CPPLVSGLGEGPRLEGTQFKGRVFCPTRRHRA-----------RRAQAELRPPEAA---- 128
+ G G G + R C +RH A R AQ P A
Sbjct: 878 GRRVRHGHGHGAAV-----LQRAPCRQQRHLAPAAAAAAAQGVRAAQGRAHRPGAQGAPS 932
Query: 129 -RTGGGCGERRRRKAAATLLLRNQNARRRNPGSRRAGPASRGA 170
R G RR R+ AA L + R G RR G + GA
Sbjct: 933 HRHRPGARGRRSRRRAAVALAGGAHPARAALGRRRGGGQAVGA 975
>gi|239744223 PREDICTED: NK1 homeobox 2 [Homo sapiens]
Length = 332
Score = 37.0 bits (84), Expect = 0.014
Identities = 37/124 (29%), Positives = 52/124 (41%), Gaps = 10/124 (8%)
Query: 105 RVFCPTRRHRARRAQAELRPPEAARTGGGCGERRRRKA-----AATLLLRNQNARRRNPG 159
R P R R A+ L EA + R+ + AA+LL R + +
Sbjct: 33 RAALPAVRPAPREARKSLAEVEAGKDASSRDPVRQLETPGQGFAASLLTRQAHPHHSSDA 92
Query: 160 SRRAGPASRGAMLEKGSSSREDAPPAWEAEEPARGAWRV-ASRGETGLARSGDPHRPQSA 218
AGP + A +GS + E+ +AE+P R R A+R GLARS D A
Sbjct: 93 RDAAGPGAGQASPLEGSEAEEEE----DAEDPRRPRLRERAARLLPGLARSPDAPAGALA 148
Query: 219 RGDP 222
G+P
Sbjct: 149 SGEP 152
>gi|239741982 PREDICTED: hypothetical protein [Homo sapiens]
Length = 423
Score = 37.0 bits (84), Expect = 0.014
Identities = 59/216 (27%), Positives = 79/216 (36%), Gaps = 33/216 (15%)
Query: 2 RGREEGRGDQERTRRHRACPGCRGSEVSPGEGAPGSGQRPAGTSGGRKVLEL------SE 55
R R+E G Q R R A G + + G+G+R G G V L +
Sbjct: 135 RLRQESPGVQGRPRDGYAGGPGHGGQERIHACSLGAGRRCGGAGGNVPVFFLINDAHAAA 194
Query: 56 RYGEGLCRRVGMRRQQGKDSVWGRYSGR-CPPLVSGLGEGPRLEGTQFKGRVFCPTRRHR 114
R L +G+ + G + W Y GR P + +GP L+ P+
Sbjct: 195 RGSCALSPALGLA-ENGPGNEW--YRGRPAHPAGAITLDGPVLDA---------PSGAEA 242
Query: 115 ARRAQAELRPPEAARTGGGCGERRRRKAAATLLLRNQNARRRNPGSRRAGPASRGAMLEK 174
A A L PP GG G R R L Q+AR PG GP + GA
Sbjct: 243 ATLAGVRLPPPPGC---GGSGARGLRPEQ--LWSHVQHARCPQPGR---GPDASGAAGRS 294
Query: 175 GSSSREDAPPAWEAEEPARG------AWRVASRGET 204
+ P AWE + RG +WR + G T
Sbjct: 295 RAPPPAAVPAAWEGTDRRRGRRRRRPSWRNGTEGST 330
>gi|239758151 PREDICTED: hypothetical protein XP_002346314 [Homo
sapiens]
Length = 321
Score = 36.6 bits (83), Expect = 0.019
Identities = 44/148 (29%), Positives = 59/148 (39%), Gaps = 24/148 (16%)
Query: 31 GEGAPGSGQRPAGTSGGRKVLELSERYGEGLCRRVGMRRQQGKDSVWGRYSGRCPPLVSG 90
G+ A +G + G GG+K + R VG RR+ K R G+ G
Sbjct: 182 GQKAAAAGAKSCG-GGGKKPQK---------ARAVGARRRGWKKL---RRRGKKAAAAGG 228
Query: 91 LGEGPRLEGTQFKGRVFCPTRRHRARRAQAELRPPEAARTGGGCGERRRRKAAATLLLRN 150
G +L KGR ++ R R +A AA G C + RR+KAAA
Sbjct: 229 EKAGKKLRQQGEKGR-----KKPRRRGQKA------AAAGGERCKKPRRQKAAAVSAKSP 277
Query: 151 QNARRRNPGSRRAGPASRGAMLEKGSSS 178
+ RRR S R G SR +G S
Sbjct: 278 KKPRRRVLNSARLGAESRKNPQRRGQKS 305
>gi|188536004 zinc finger protein 469 [Homo sapiens]
Length = 3925
Score = 36.6 bits (83), Expect = 0.019
Identities = 60/235 (25%), Positives = 80/235 (34%), Gaps = 46/235 (19%)
Query: 2 RGREEGRGDQERTRRHRACPGCRGSEVSPGEGAPGSGQRPAGTSGGRKVLELSERYGEGL 61
+GR++ RG Q + R G G G SG RP R +GL
Sbjct: 941 QGRQQRRGKQLKLFRKDLDSGGAAEGSGSGGGGRASGLRP--------------RRNDGL 986
Query: 62 CRRVGMRRQQGKDSVWGRYSGRCP--PLVSGLGEGPRLEGTQFKGRVFCPTRRHRARRAQ 119
R R ++ + G + P P + L E TR R RR
Sbjct: 987 GERPPPRPRRPRTQAPGSRADPAPRVPRAAALPE---------------ETRSSRRRRLP 1031
Query: 120 AELRPPEAARTGGGCGE-----------RRRRKAAATLLLRNQNARRRNPGSR-RAGPAS 167
P + GG G+ R R A+ ++ R PG R R G
Sbjct: 1032 PRKDPRKRKARGGAWGKELILKIVQQKNRLREYDFASESEEDEQPPPRGPGFRGRRGRGE 1091
Query: 168 RGAMLEKGSSSREDAP--PAWEAEEPARGAWRVASRGETGLARSGDPHRPQSARG 220
+ +E RED P P A + A G A+ E G +R G P R ARG
Sbjct: 1092 KRKEVELTQGPREDEPQKPRKAARQEAGGDGAPANPEEPGGSRPG-PGRSPQARG 1145
>gi|239748084 PREDICTED: hypothetical protein [Homo sapiens]
Length = 423
Score = 36.2 bits (82), Expect = 0.025
Identities = 58/211 (27%), Positives = 76/211 (36%), Gaps = 27/211 (12%)
Query: 2 RGREEGRGDQERTRRHRACPGCRGSEVSPGEGAPGSGQRPAGTSGGRKVLEL------SE 55
R R+E G Q R R A G + + G+G+R G G V L +
Sbjct: 135 RLRQESPGVQGRPRDGYAGGPGHGGQERIHACSLGAGRRCGGAGGNVPVFFLINDAHAAA 194
Query: 56 RYGEGLCRRVGMRRQQGKDSVWGRYSGR-CPPLVSGLGEGPRLEGTQFKGRVFCPTRRHR 114
R L +G+ + G + W Y GR P + +GP L+ P+
Sbjct: 195 RGSCALSPALGLA-ENGPGNEW--YRGRPAHPAGAITLDGPVLDA---------PSGAEA 242
Query: 115 ARRAQAELRPPEAARTGGGCGERRRRKAAATLLLRNQNARRRNPGSRRAGPASRGAMLEK 174
A A L PP GG G R R L Q+AR PG GP + GA
Sbjct: 243 ATLAGVRLPPPPGC---GGSGARGLRPEQ--LWSHVQHARCPQPGR---GPDASGAAGRS 294
Query: 175 GSSSREDAPPAWEAEEPARGAWRVASRGETG 205
+ P AWE + RG R G G
Sbjct: 295 RAPPPAAVPAAWEGTDRRRGRRRRRPSGRNG 325
>gi|158854042 hypothetical protein LOC222183 [Homo sapiens]
Length = 653
Score = 36.2 bits (82), Expect = 0.025
Identities = 63/251 (25%), Positives = 85/251 (33%), Gaps = 44/251 (17%)
Query: 10 DQERTRRHRACPGCRGSEVSPGEGAPGSGQRPAGTSGGRKVLELSERY-GEGLCRRVGMR 68
++E+ R H PG R S G+ S + S R LS ++ EG R+ G +
Sbjct: 237 NKEKKRPHTESPGRRSHRHS--SGSSHSPSLSSHYSDSRSPSRLSPKHRDEG--RKTGSQ 292
Query: 69 RQQGKDSV-------WGRYSGRCPPLVSGLGEGPRLEGTQFKG------RVFCPTRRHRA 115
R G S WG P G G+ G + + P+ R R
Sbjct: 293 RSSGSRSPSPSGGSGWGS-----PQRNGGSGQRSGAHGGRPGSAHSPPDKPSSPSPRVRD 347
Query: 116 RRAQAELRPP-----------------EAARTGGGCGERRRRKAAATLLLRNQNARRRNP 158
+ A A PP R GG G RRRR+ + +A RR
Sbjct: 348 KAAAAAPTPPARGKESPSPRSAPSSQGRGGRAAGGAGRRRRRRRRRRRSRSSASAPRRR- 406
Query: 159 GSRRAGPASRGAMLEKGSSSREDAPPAWEAEEPARGAWRVASRGETGLARSGDPHRPQSA 218
G RR PA S +R + P G + RG G + RP A
Sbjct: 407 GRRRPRPAPPRGSSRSLSRARSSSDSGSGRGAPGPGPEPGSERGHGGHGKRA-KERPPRA 465
Query: 219 RGDPVTALPFP 229
R P + P P
Sbjct: 466 R--PASTSPSP 474
Score = 33.1 bits (74), Expect = 0.21
Identities = 61/229 (26%), Positives = 78/229 (34%), Gaps = 34/229 (14%)
Query: 4 REEGRGDQERTRRHRACPGCRGSEVSPGEGAP----GSGQRPAGTSGGR---------KV 50
R+EGR + P G G G+P GSGQR +G GGR K
Sbjct: 283 RDEGRKTGSQRSSGSRSPSPSGGS---GWGSPQRNGGSGQR-SGAHGGRPGSAHSPPDKP 338
Query: 51 LELSERYGEGLCRRVGMRRQQGKDSVWGRYSGRCPPLVSGLGEGPRLEGTQFKGRVFCPT 110
S R + +GK+S S R P S G G R G + R
Sbjct: 339 SSPSPRVRDKAAAAAPTPPARGKESP----SPRSAP--SSQGRGGRAAGGAGRRR----R 388
Query: 111 RRHRARRAQAELRPPEAARTGGGCGERRRRKAAATLLLRNQNARRRNPGSRRAGPASRGA 170
RR R RR+++ P R G RRR + A +R R+ +G + G
Sbjct: 389 RRRRRRRSRSSASAPR--RRG-----RRRPRPAPPRGSSRSLSRARSSSDSGSGRGAPGP 441
Query: 171 MLEKGSSSREDAPPAWEAEEPARGAWRVASRGETGLARSGDPHRPQSAR 219
E GS E P R S R G P S+R
Sbjct: 442 GPEPGSERGHGGHGKRAKERPPRARPASTSPSPGAHGRRGGPEGKSSSR 490
>gi|239758013 PREDICTED: hypothetical protein [Homo sapiens]
Length = 819
Score = 35.8 bits (81), Expect = 0.032
Identities = 67/261 (25%), Positives = 93/261 (35%), Gaps = 53/261 (20%)
Query: 2 RGREEGRGDQE-------------RTRRHRACPGCRGSEVSPGEGAPGSGQRPAG---TS 45
RG E+ +G Q R + R P G++ G G QR G +
Sbjct: 198 RGDEDKKGRQREAKSRFGKTRGGRRKKHRRPKPAAGGAKSRRGGGKKPQKQRRRGQKAAT 257
Query: 46 GGRKVLELSERYGEGLCRRVGMRRQQGKDSVWGRYSGRCPPLVSGLG-EGPRLEGTQFK- 103
GG+ + S G+ RR G G + P G G GP+ G Q
Sbjct: 258 GGKSRVGKSRGGGDKKLRRQGQNAALAGAKRRGAATAGEKPAAKGRGGRGPKSLGGQNPR 317
Query: 104 -GRVFCPTRRHRARRAQAELRPPEAARTGGGCGERRRRKAAATLLLRNQNARRRNPGSRR 162
GR RR R Q + A GG G++ KAA + + RRR RR
Sbjct: 318 WGRGGKKPRR----RGQKATKAAAAGTKRGGGGQQ---KAAVVGVKSRKKQRRRGKKPRR 370
Query: 163 -----AGPASRGAMLEKG---SSSREDA--PPAWE----------AEEPARGAWR----- 197
AG SRG +KG + R D P W+ A +P G +
Sbjct: 371 QKASAAGAKSRGGGDKKGLREAKRRGDGRKKPRWQNPRRRAQKAPAAKPRGGGSKKPRRR 430
Query: 198 --VASRGETGLARSGDPHRPQ 216
A++ G +RSG +P+
Sbjct: 431 GPKAAKSRGGKSRSGGGKKPR 451
>gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens]
Length = 2752
Score = 35.8 bits (81), Expect = 0.032
Identities = 56/213 (26%), Positives = 69/213 (32%), Gaps = 24/213 (11%)
Query: 8 RGDQERTR-RHRACPGCRGSEVSPGEGAPGSGQRPAGTSG-----GRKVLELSERYGEGL 61
R Q R R R PG S + G S +R S GR R G
Sbjct: 526 RSPQRRGRSRSPQRPGWSRSRNTQRRGRSRSARRGRSHSRSPATRGRSRSRTPARRGRSR 585
Query: 62 CRRVGMRRQQGKDSVWGRYSGRCPPLVSGLGEGPRLEGTQFKGRVFCPTRRHRARRAQAE 121
R RR + + R R P + G + + R P RR R+ A
Sbjct: 586 SRTPARRRSRSRTPTRRRSRSRTP---ARRGRSRSRTPARRRSRTRSPVRRRSRSRSPAR 642
Query: 122 LRPPEAARTGGGCGERRRRKAAATLLLRNQNARRRNPGSRRAGPASRGAMLEKGSSSRED 181
+RT G R R A R++ RR+ SR PA RG S SR
Sbjct: 643 RSGRSRSRTPARRGRSRSRTPARRGRSRSRTPARRSGRSRSRTPARRGR-----SRSR-- 695
Query: 182 APPAWEAEEPARGAWRVASRGETGLARSGDPHR 214
P RG R S G + S P R
Sbjct: 696 --------TPRRGRSRSRSLVRRGRSHSRTPQR 720
Score = 31.6 bits (70), Expect = 0.60
Identities = 38/132 (28%), Positives = 48/132 (36%), Gaps = 19/132 (14%)
Query: 96 RLEGTQFKGRVFCPTRRHRARRAQAELRPPEAARTGGGCGERRRRKAAATLLLRNQNARR 155
R Q GR P RR R+R Q RP G R ++ + R +
Sbjct: 515 RSRSAQRWGRSRSPQRRGRSRSPQ---RP-------GWSRSRNTQRRGRSRSARRGRSHS 564
Query: 156 RNPG----SRRAGPASRGAMLEKGSSSREDAPPAWEAEEPARGAWRVASRGETGLARSGD 211
R+P SR PA RG S SR A + P R R + G +RS
Sbjct: 565 RSPATRGRSRSRTPARRGR-----SRSRTPARRRSRSRTPTRRRSRSRTPARRGRSRSRT 619
Query: 212 PHRPQSARGDPV 223
P R +S PV
Sbjct: 620 PARRRSRTRSPV 631
Score = 31.6 bits (70), Expect = 0.60
Identities = 29/103 (28%), Positives = 42/103 (40%), Gaps = 10/103 (9%)
Query: 110 TRRHRARRAQAELRPPEAARTGGGCGERRRRKAAATLLLRNQNARRRNPGSRRAGPASRG 169
TRR R R +RT RRR + T LL + +R R+P + R SR
Sbjct: 2002 TRRRSRSRTSPVTRRRSRSRTPPAI---RRRSRSRTPLLPRKRSRSRSPLAIRRRSRSRT 2058
Query: 170 AMLEKGSSSREDAPPA-------WEAEEPARGAWRVASRGETG 205
+G S +PPA + + +R A A+R +G
Sbjct: 2059 PRTARGKRSLTRSPPAIRRRSASGSSSDRSRSATPPATRNHSG 2101
Score = 31.2 bits (69), Expect = 0.79
Identities = 62/255 (24%), Positives = 86/255 (33%), Gaps = 38/255 (14%)
Query: 4 REEGRGDQERTR-RHRACPGCRGSEVSPGEGAPGSGQR----PAGTSGGRKVLEL-SERY 57
+E R R R R R P R S AP R PA R L S R
Sbjct: 1828 QESSRTSSRRRRGRSRTPPTSRKRSRSRTSPAPWKRSRSRASPATHRRSRSRTPLISRRR 1887
Query: 58 GEGLCRRVGMRRQQGKDSVWGRYS-GRCPPLVSGLGEGPRLEGTQFKGRVFCPTRRHRAR 116
V RR + + SV R S R P+ T+ + R PT R R+R
Sbjct: 1888 SRSRTSPVSRRRSRSRTSVTRRRSRSRASPVSRRRSRSRTPPVTRRRSRSRTPTTRRRSR 1947
Query: 117 -------RAQAELRPPEAARTGGGCGE----------------RRRRKAAATLLLRNQNA 153
R ++ R P R RRR ++ + + R ++
Sbjct: 1948 SRTPPVTRRRSRSRTPPVTRRRSRSRTSPITRRRSRSRTSPVTRRRSRSRTSPVTRRRSR 2007
Query: 154 RRRNPGSRRAGPASRGAMLEKGSSSREDAPPAWEAEEPARGAWRVAS--------RGETG 205
R +P +RR + + + S SR P + + A R S RG+
Sbjct: 2008 SRTSPVTRRRSRSRTPPAIRRRSRSRTPLLPRKRSRSRSPLAIRRRSRSRTPRTARGKRS 2067
Query: 206 LARSGDPHRPQSARG 220
L RS R +SA G
Sbjct: 2068 LTRSPPAIRRRSASG 2082
>gi|239753576 PREDICTED: hypothetical protein [Homo sapiens]
Length = 423
Score = 35.4 bits (80), Expect = 0.042
Identities = 57/217 (26%), Positives = 74/217 (34%), Gaps = 40/217 (18%)
Query: 9 GDQERTRRHRACPGCRGSEVSPGEGAPG-------------SGQRPAGTSGGRKVLEL-- 53
G TR + PG +G G PG +G+R G G V L
Sbjct: 129 GGGSGTRLRQESPGVQGRPPDGYAGGPGHGGQERIHACSLGAGRRCGGAGGNVPVFFLIN 188
Query: 54 ----SERYGEGLCRRVGMRRQQGKDSVWGRYSGR-CPPLVSGLGEGPRLEGTQFKGRVFC 108
+ R L +G+ + G + W Y GR P + +GP L+
Sbjct: 189 DAHAAARGSCALSPALGLA-ENGPGNEW--YRGRPAHPAGAITLDGPVLDA--------- 236
Query: 109 PTRRHRARRAQAELRPPEAARTGGGCGERRRRKAAATLLLRNQNARRRNPGSRRAGPASR 168
P+ A A L PP GG G R R L Q+AR PG GP +
Sbjct: 237 PSGAEAATLAGVRLPPPPGC---GGSGARGLRPEQ--LWSHVQHARCPQPGR---GPDAS 288
Query: 169 GAMLEKGSSSREDAPPAWEAEEPARGAWRVASRGETG 205
GA + P AWE + RG R G G
Sbjct: 289 GAAGRSRAPPPAAVPAAWEGTDRRRGRRRRRPSGRNG 325
>gi|239753314 PREDICTED: similar to RIKEN cDNA C230030N03 [Homo
sapiens]
Length = 1183
Score = 35.4 bits (80), Expect = 0.042
Identities = 50/192 (26%), Positives = 67/192 (34%), Gaps = 25/192 (13%)
Query: 25 GSEVSPGEGAPGSGQRPAGTSGGRKVLELSERYGEGLCRRVGMRRQQGKDSVWGRYSGRC 84
G GE PG G+ PAG + + G+G +RV + G+ V S
Sbjct: 598 GPGAEEGEQGPGGGKTPAGNECELPAAPI-QGAGDGALQRVAQAAELGRVLVPQAASEET 656
Query: 85 PPLVSGLGEGPRLEGTQFKGRVFCPTRRHRARRAQAELRPPEAARTGGGCGERRRRKAAA 144
P GE RL G +R + + R PE A GG R +R
Sbjct: 657 PSTEEPPGE--RLRG--------------ESRSSGSGERGPEEAPEGGAAAARGQRPRVP 700
Query: 145 TLLLRNQNARRRNPGSRRAGPASRGAMLEKGSSSREDAPPAWEA----EEPARGAWRVAS 200
L Q R G++ G + K +S R+ P A E+ P R S
Sbjct: 701 A-LEPPQPPRGLRKGAQEPG---KRPTFSKVTSFRKGRPLATESPGGVPAPTTEGRRWGS 756
Query: 201 RGETGLARSGDP 212
G GL R P
Sbjct: 757 SGPEGLPRENPP 768
>gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens]
Length = 1466
Score = 35.0 bits (79), Expect = 0.055
Identities = 53/216 (24%), Positives = 71/216 (32%), Gaps = 19/216 (8%)
Query: 18 RACPGCRGSEVSPG----EGAPGSG--QRPAGTSGGRKVLELSERYGEGLCRRVGMRRQQ 71
R PG GS +PG G+PG PAG +G +S G+ G ++
Sbjct: 878 RGLPGPPGSNGNPGPPGPSGSPGKDGPPGPAGNTGAPGSPGVSGPKGDA-----GQPGEK 932
Query: 72 GKDSVWGRYSGRCPPLVSGLGEGPRLEGTQFKGRVFCPTRRHRARRAQAELRPPEAARTG 131
G G P ++G+ L G P + + E P A
Sbjct: 933 GSPGAQGPPGAPGPLGIAGITGARGLAGPPGMPG---PRGSPGPQGVKGESGKPGANGLS 989
Query: 132 GGCGERRRRKAAATLLLRNQNARRRNPGS-----RRAGPASRGAMLEKGSSSREDAPPAW 186
G G + + R NPGS R P +G E GS AP
Sbjct: 990 GERGPPGPQGLPGLAGTAGEPGRDGNPGSDGLPGRDGSPGGKGDRGENGSPGAPGAPGHP 1049
Query: 187 EAEEPARGAWRVASRGETGLARSGDPHRPQSARGDP 222
P A + RGE+G A P +RG P
Sbjct: 1050 GPPGPVGPAGKSGDRGESGPAGPAGAPGPAGSRGAP 1085
Score = 31.2 bits (69), Expect = 0.79
Identities = 60/234 (25%), Positives = 74/234 (31%), Gaps = 27/234 (11%)
Query: 2 RGREEGRGDQERTRRHRACPGCRGSEVSPGE-GAPGSGQRPAGTSGGRKVLELSERYGEG 60
RG + G++ T PG +G PGE GAPG P G G ER G
Sbjct: 266 RGFDGRNGEKGET----GAPGLKGENGLPGENGAPG----PMGPRGAP-----GERGRPG 312
Query: 61 LCRRVGMRRQQGKDSVWGRYSGRCPPLVSGLGEGPRLEG----TQFKGRVFCPTRRHRA- 115
L G R G G+ PP +G P +G G P +R
Sbjct: 313 LPGAAGARGNDGARGSDGQPGPPGPPGTAGFPGSPGAKGEVGPAGSPGSNGAPGQRGEPG 372
Query: 116 ----RRAQAELRPPEAARTGGGCGERRRRKAAATLLLRNQNARRRNPGSRRAGPASRGAM 171
AQ PP + GG GE L P P RG
Sbjct: 373 PQGHAGAQGPPGPPGINGSPGGKGEMGPAGIPGAPGLMGARG-PPGPAGANGAPGLRGGA 431
Query: 172 LEKGSSSREDAPPAWEAEEPARGAWRVASRGETGLARSGDPHRPQSARGDPVTA 225
E G + + P A ++GE G + G P P A G P A
Sbjct: 432 GEPGKNGAKGEPGPRGERGEAGIPGVPGAKGEDG--KDGSPGEP-GANGLPGAA 482
Score = 28.9 bits (63), Expect = 3.9
Identities = 24/84 (28%), Positives = 30/84 (35%), Gaps = 2/84 (2%)
Query: 7 GRGDQERTRRHRACPGCRGSEVSPGEGAPGSGQRPAGTSGGRKVLELSERYGEGLCRRVG 66
G+ + + R PG +G PG P G PAG G + V ER G G
Sbjct: 816 GQNGEPGGKGERGAPGEKGEGGPPGVAGPPGGSGPAGPPGPQGV--KGERGSPGGPGAAG 873
Query: 67 MRRQQGKDSVWGRYSGRCPPLVSG 90
+G G PP SG
Sbjct: 874 FPGARGLPGPPGSNGNPGPPGPSG 897
>gi|169214061 PREDICTED: hypothetical protein [Homo sapiens]
Length = 384
Score = 35.0 bits (79), Expect = 0.055
Identities = 30/96 (31%), Positives = 39/96 (40%), Gaps = 14/96 (14%)
Query: 114 RARRAQ--AELRPPEAARTGGGCGERRRRKAAATLLLRNQNARRRNPGSRRAGPASRGAM 171
R+RRA + RP RT GG + A L N+ RRR G+ RAG
Sbjct: 145 RSRRAAEFTQARPTRKRRTPGG------GRPEAGCWLENRRQRRRKAGAERAGAGPTLTP 198
Query: 172 LEKGSSSREDAPPAWEAEEP------ARGAWRVASR 201
S +P A A +P +RG WR+ R
Sbjct: 199 PLPAGSPDPPSPAATAAPQPEQRPHLSRGQWRLLPR 234
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.316 0.135 0.421
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,937,354
Number of Sequences: 37866
Number of extensions: 658574
Number of successful extensions: 4305
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 293
Number of HSP's that attempted gapping in prelim test: 3888
Number of HSP's gapped (non-prelim): 678
length of query: 232
length of database: 18,247,518
effective HSP length: 99
effective length of query: 133
effective length of database: 14,498,784
effective search space: 1928338272
effective search space used: 1928338272
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.