Guide to the Human Genome
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Name: LOC100293930 Sequence: fasta or formatted (150aa) NCBI GI: 239756153
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.0         12           1
 C cysteine            2.0          3           1
 D aspartate           4.0          6           1
 E glutamate           5.3          8           2
 F phenylalanine       0.7          1           1
 G glycine            16.0         24           4
 H histidine           6.7         10           1
 I isoleucine          0.0          0           0
 K lysine              0.0          0           0
 L leucine             8.7         13           2
 M methionine          1.3          2           1
 N asparagine          2.0          3           1
 P proline             9.3         14           2
 Q glutamine           6.0          9           1
 R arginine            8.7         13           2
 S serine              8.7         13           1
 T threonine           2.0          3           1
 V valine              5.3          8           1
 W tryptophan          3.3          5           1
 Y tyrosine            2.0          3           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100287415          1.000   PREDICTED: hypothetical protein 
LOC100287415          1.000   PREDICTED: hypothetical protein XP_002343291 
RBMXL3                0.026   RNA binding motif protein, X-linked-like 3 
RCOR2                 0.023   REST corepressor 2 
KDM6B                 0.023   lysine (K)-specific demethylase 6B 
FAM120A               0.023   oxidative stress-associated Src activator 
ZIC2                  0.020   zinc finger protein of the cerebellum 2 
PTPN23                0.020   protein tyrosine phosphatase, non-receptor type 23 [...
FLJ37078              0.020   hypothetical protein LOC222183 
AR                    0.020   androgen receptor isoform 1 
DACH1                 0.020   dachshund homolog 1 isoform b 
DACH1                 0.020   dachshund homolog 1 isoform a 
DACH1                 0.020   dachshund homolog 1 isoform c 
FAM120C               0.020   hypothetical protein LOC54954 
LOC100291624          0.016   PREDICTED: hypothetical protein XP_002345876 
LOC100289712          0.016   PREDICTED: hypothetical protein XP_002346761 
LOC100287455          0.016   PREDICTED: hypothetical protein XP_002342583 
FOXG1                 0.016   forkhead box G1 
C15orf55              0.016   nuclear protein in testis 
NF-E4                 0.016   transcription factor NF-E4 
ONECUT3               0.016   one cut homeobox 3 
BAX                   0.016   BCL2-associated X protein isoform beta 
LOC100291807          0.016   PREDICTED: hypothetical protein XP_002345507 
GAR1                  0.016   nucleolar protein family A, member 1 
GAR1                  0.016   nucleolar protein family A, member 1 
TAF15                 0.016   TBP-associated factor 15 isoform 2 
TAF15                 0.016   TBP-associated factor 15 isoform 1 
LOC100291995          0.016   PREDICTED: hypothetical protein XP_002345272 
LOC100289978          0.016   PREDICTED: hypothetical protein XP_002348035 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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