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Search of human proteins with 239756043
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239756043 PREDICTED: similar to hCG2041645 [Homo sapiens]
(147 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239756043 PREDICTED: similar to hCG2041645 [Homo sapiens] 306 3e-84
gi|239750566 PREDICTED: hypothetical protein XP_002347457 [Homo ... 305 1e-83
gi|239744867 PREDICTED: hypothetical protein XP_002344117 [Homo ... 305 1e-83
gi|134142824 forkhead box D2 [Homo sapiens] 31 0.42
gi|76880480 hypothetical protein LOC9865 [Homo sapiens] 30 0.55
gi|89257335 oleoyl-ACP hydrolase isoform 2 [Homo sapiens] 30 0.72
gi|8922871 oleoyl-ACP hydrolase isoform 1 [Homo sapiens] 30 0.72
gi|169172087 PREDICTED: hypothetical protein [Homo sapiens] 30 0.95
gi|148762969 myeloid/lymphoid or mixed-lineage leukemia 2 [Homo ... 30 0.95
gi|7662046 myeloid/lymphoid or mixed-lineage leukemia 4 [Homo sa... 30 0.95
gi|165905613 ring finger and KH domain containing 1 [Homo sapiens] 30 0.95
gi|239756886 PREDICTED: hypothetical protein [Homo sapiens] 29 1.2
gi|169171680 PREDICTED: hypothetical protein [Homo sapiens] 29 1.2
gi|239751382 PREDICTED: hypothetical protein XP_002347832 [Homo ... 29 1.2
gi|239745889 PREDICTED: hypothetical protein XP_002343609 [Homo ... 29 1.2
gi|169164452 PREDICTED: similar to hCG1643669 [Homo sapiens] 29 1.6
gi|169164815 PREDICTED: similar to hCG1643669 [Homo sapiens] 29 1.6
gi|169163509 PREDICTED: hypothetical protein LOC100131482 [Homo ... 29 1.6
gi|31324577 molecule interacting with Rab13 [Homo sapiens] 28 2.1
gi|117938768 GNAS complex locus alex [Homo sapiens] 28 2.8
gi|169194585 PREDICTED: similar to hCG1793014 [Homo sapiens] 28 2.8
gi|169636420 carbonic anhydrase IX precursor [Homo sapiens] 28 2.8
gi|90991712 CD207 antigen, langerin [Homo sapiens] 28 2.8
gi|209862845 nuclear factor of activated T-cells, cytoplasmic, c... 28 3.6
gi|27886563 nuclear factor of activated T-cells, cytoplasmic, ca... 28 3.6
gi|169201955 PREDICTED: similar to hCG1793014 [Homo sapiens] 28 3.6
gi|239749704 PREDICTED: hypothetical protein XP_002347124 [Homo ... 28 3.6
gi|169192125 PREDICTED: similar to UNCoordinated family member (... 28 3.6
gi|169217249 PREDICTED: hypothetical protein [Homo sapiens] 27 4.7
gi|239754641 PREDICTED: hypothetical protein [Homo sapiens] 27 4.7
>gi|239756043 PREDICTED: similar to hCG2041645 [Homo sapiens]
Length = 147
Score = 306 bits (785), Expect = 3e-84
Identities = 147/147 (100%), Positives = 147/147 (100%)
Query: 1 MRSQGRAPAGSAPSFLPGKGSTGGVAPESLTLVLSAASPLVDPRWPRIPLDCRRWAGAPL 60
MRSQGRAPAGSAPSFLPGKGSTGGVAPESLTLVLSAASPLVDPRWPRIPLDCRRWAGAPL
Sbjct: 1 MRSQGRAPAGSAPSFLPGKGSTGGVAPESLTLVLSAASPLVDPRWPRIPLDCRRWAGAPL 60
Query: 61 LISPETGRPAPSTRVVSFRAVPRSWLPRGLLTAVGSGHSDADRGLNARWYGIQTLLISIC 120
LISPETGRPAPSTRVVSFRAVPRSWLPRGLLTAVGSGHSDADRGLNARWYGIQTLLISIC
Sbjct: 61 LISPETGRPAPSTRVVSFRAVPRSWLPRGLLTAVGSGHSDADRGLNARWYGIQTLLISIC 120
Query: 121 SDPYLDCTSTLHPEDLNMLTGGCRFVF 147
SDPYLDCTSTLHPEDLNMLTGGCRFVF
Sbjct: 121 SDPYLDCTSTLHPEDLNMLTGGCRFVF 147
>gi|239750566 PREDICTED: hypothetical protein XP_002347457 [Homo
sapiens]
Length = 147
Score = 305 bits (780), Expect = 1e-83
Identities = 146/147 (99%), Positives = 146/147 (99%)
Query: 1 MRSQGRAPAGSAPSFLPGKGSTGGVAPESLTLVLSAASPLVDPRWPRIPLDCRRWAGAPL 60
MRSQGRAPAGSAPSFLPGKGS GGVAPESLTLVLSAASPLVDPRWPRIPLDCRRWAGAPL
Sbjct: 1 MRSQGRAPAGSAPSFLPGKGSAGGVAPESLTLVLSAASPLVDPRWPRIPLDCRRWAGAPL 60
Query: 61 LISPETGRPAPSTRVVSFRAVPRSWLPRGLLTAVGSGHSDADRGLNARWYGIQTLLISIC 120
LISPETGRPAPSTRVVSFRAVPRSWLPRGLLTAVGSGHSDADRGLNARWYGIQTLLISIC
Sbjct: 61 LISPETGRPAPSTRVVSFRAVPRSWLPRGLLTAVGSGHSDADRGLNARWYGIQTLLISIC 120
Query: 121 SDPYLDCTSTLHPEDLNMLTGGCRFVF 147
SDPYLDCTSTLHPEDLNMLTGGCRFVF
Sbjct: 121 SDPYLDCTSTLHPEDLNMLTGGCRFVF 147
>gi|239744867 PREDICTED: hypothetical protein XP_002344117 [Homo
sapiens]
Length = 147
Score = 305 bits (780), Expect = 1e-83
Identities = 146/147 (99%), Positives = 146/147 (99%)
Query: 1 MRSQGRAPAGSAPSFLPGKGSTGGVAPESLTLVLSAASPLVDPRWPRIPLDCRRWAGAPL 60
MRSQGRAPAGSAPSFLPGKGS GGVAPESLTLVLSAASPLVDPRWPRIPLDCRRWAGAPL
Sbjct: 1 MRSQGRAPAGSAPSFLPGKGSAGGVAPESLTLVLSAASPLVDPRWPRIPLDCRRWAGAPL 60
Query: 61 LISPETGRPAPSTRVVSFRAVPRSWLPRGLLTAVGSGHSDADRGLNARWYGIQTLLISIC 120
LISPETGRPAPSTRVVSFRAVPRSWLPRGLLTAVGSGHSDADRGLNARWYGIQTLLISIC
Sbjct: 61 LISPETGRPAPSTRVVSFRAVPRSWLPRGLLTAVGSGHSDADRGLNARWYGIQTLLISIC 120
Query: 121 SDPYLDCTSTLHPEDLNMLTGGCRFVF 147
SDPYLDCTSTLHPEDLNMLTGGCRFVF
Sbjct: 121 SDPYLDCTSTLHPEDLNMLTGGCRFVF 147
>gi|134142824 forkhead box D2 [Homo sapiens]
Length = 495
Score = 30.8 bits (68), Expect = 0.42
Identities = 30/102 (29%), Positives = 35/102 (34%), Gaps = 21/102 (20%)
Query: 7 APAGSAPSFLPGKGSTGGVAPESLTLVLSAASPLVDPRWPRIPLDCRRWAGAPLLISPET 66
A AGSAP+ P GS G P L L A L C + A L P
Sbjct: 329 AGAGSAPAPAPASGSGPGPGPAGLPAFLGA------------ELGCAKAFYAASLSPPAA 376
Query: 67 GRPAPSTRVVSFRAVPRSWLPRGLLTAVGSGHSDADRGLNAR 108
G A +P + L +GL T G G G R
Sbjct: 377 GTAA---------GLPTALLRQGLKTDAGGGAGGGGAGAGQR 409
>gi|76880480 hypothetical protein LOC9865 [Homo sapiens]
Length = 811
Score = 30.4 bits (67), Expect = 0.55
Identities = 21/53 (39%), Positives = 25/53 (47%), Gaps = 8/53 (15%)
Query: 16 LPGKGSTGGVAPESLTLVLSAASPLV--------DPRWPRIPLDCRRWAGAPL 60
LP GS GGV + LTL L + L+ RW R L RR GAP+
Sbjct: 684 LPEAGSRGGVDYQLLTLALLTVNALLVLLALAAWASRWLRRKLRARRKGGAPV 736
>gi|89257335 oleoyl-ACP hydrolase isoform 2 [Homo sapiens]
Length = 265
Score = 30.0 bits (66), Expect = 0.72
Identities = 17/42 (40%), Positives = 21/42 (50%)
Query: 10 GSAPSFLPGKGSTGGVAPESLTLVLSAASPLVDPRWPRIPLD 51
GS +F G PE L L LS+A+P+ W RIP D
Sbjct: 103 GSYIAFRTALGLKENNQPEPLHLFLSSATPVHSKAWHRIPKD 144
>gi|8922871 oleoyl-ACP hydrolase isoform 1 [Homo sapiens]
Length = 318
Score = 30.0 bits (66), Expect = 0.72
Identities = 17/42 (40%), Positives = 21/42 (50%)
Query: 10 GSAPSFLPGKGSTGGVAPESLTLVLSAASPLVDPRWPRIPLD 51
GS +F G PE L L LS+A+P+ W RIP D
Sbjct: 156 GSYIAFRTALGLKENNQPEPLHLFLSSATPVHSKAWHRIPKD 197
>gi|169172087 PREDICTED: hypothetical protein [Homo sapiens]
Length = 278
Score = 29.6 bits (65), Expect = 0.95
Identities = 29/96 (30%), Positives = 39/96 (40%), Gaps = 11/96 (11%)
Query: 18 GKGSTGGVAPESLTLVLSAASPLVDPRWPRIPLDCRRWA-GAPLLISPETGRPAPSTRVV 76
G+ GG S L LSAAS R P R W GAP+ + P RPAP+
Sbjct: 45 GRCRRGGDPRPSAHLKLSAASDWRAQRGPGEGRGLRHWPRGAPVTV-PAARRPAPA---- 99
Query: 77 SFRAVPRSWLPRGLLTAVGSGHSDADRGLNARWYGI 112
PR G A+ G ++ + L +G+
Sbjct: 100 -----PRGPKQPGCCAALAGGDTNGEWILRGSTWGL 130
>gi|148762969 myeloid/lymphoid or mixed-lineage leukemia 2 [Homo
sapiens]
Length = 5537
Score = 29.6 bits (65), Expect = 0.95
Identities = 23/68 (33%), Positives = 28/68 (41%), Gaps = 9/68 (13%)
Query: 7 APAGSAPSFLPGKGSTGGVAPESLTLVLSAASPLVDPRWPRIPLDCRRWAGAPLLISPET 66
AP PS P + +P + LV PL +P P PL PL SPE+
Sbjct: 4908 APPPEEPSPPPSPLAPSPASPPTEPLVELPTEPLAEPPVPS-PL--------PLASSPES 4958
Query: 67 GRPAPSTR 74
RP P R
Sbjct: 4959 ARPKPRAR 4966
>gi|7662046 myeloid/lymphoid or mixed-lineage leukemia 4 [Homo
sapiens]
Length = 2715
Score = 29.6 bits (65), Expect = 0.95
Identities = 26/98 (26%), Positives = 36/98 (36%), Gaps = 24/98 (24%)
Query: 13 PSFLPGKGSTGGVA---------PESLTLVLSAASPLVDPRWPRIPLDCRR--------- 54
P++ P + GGV+ P SLT + DP +P P RR
Sbjct: 1868 PNYSPSRRPLGGVSFGPLPSPGSPSSLTHHIPTVG---DPDFPAPPRRSRRPSPLAPRPP 1924
Query: 55 ---WAGAPLLISPETGRPAPSTRVVSFRAVPRSWLPRG 89
WA PL SP+ P P++ V + P G
Sbjct: 1925 PSRWASPPLKTSPQLRVPPPTSVVTALTPTSGELAPPG 1962
>gi|165905613 ring finger and KH domain containing 1 [Homo sapiens]
Length = 651
Score = 29.6 bits (65), Expect = 0.95
Identities = 25/87 (28%), Positives = 31/87 (35%), Gaps = 14/87 (16%)
Query: 5 GRAPAGSAPSFLPGKGSTGGVAPESLTLVLSAASPLVDPRWPRIPLDCRRWAGAPLLISP 64
G A G+AP +P G G P V + PL+DP A P P
Sbjct: 91 GGADGGAAPEPVPPDGPEAGAPPTLAPAVAPGSLPLLDPN-----------ASPP---PP 136
Query: 65 ETGRPAPSTRVVSFRAVPRSWLPRGLL 91
RP+P F P + P LL
Sbjct: 137 PPPRPSPPDVFAGFAPHPAALGPPTLL 163
>gi|239756886 PREDICTED: hypothetical protein [Homo sapiens]
Length = 207
Score = 29.3 bits (64), Expect = 1.2
Identities = 22/66 (33%), Positives = 28/66 (42%), Gaps = 13/66 (19%)
Query: 8 PAGSAPSFLPGKGSTGGVAPESLTLVLSAASPLVDPRWPRIPLDC----RRWAGAPLLIS 63
PA S +++PGK L+L AS D P + L C R W G PL +
Sbjct: 80 PAISPRTYIPGKVGD---------LILVEASLPKDSPAPLVHLSCELRVRGWKGTPLHLG 130
Query: 64 PETGRP 69
E G P
Sbjct: 131 EECGAP 136
>gi|169171680 PREDICTED: hypothetical protein [Homo sapiens]
Length = 226
Score = 29.3 bits (64), Expect = 1.2
Identities = 19/43 (44%), Positives = 20/43 (46%), Gaps = 3/43 (6%)
Query: 62 ISPETGRPA---PSTRVVSFRAVPRSWLPRGLLTAVGSGHSDA 101
ISP T PA P R S LPRGL +VGS H A
Sbjct: 131 ISPGTPHPAAHPPERTAPHLRGPVASGLPRGLRVSVGSPHVSA 173
>gi|239751382 PREDICTED: hypothetical protein XP_002347832 [Homo
sapiens]
Length = 207
Score = 29.3 bits (64), Expect = 1.2
Identities = 22/66 (33%), Positives = 28/66 (42%), Gaps = 13/66 (19%)
Query: 8 PAGSAPSFLPGKGSTGGVAPESLTLVLSAASPLVDPRWPRIPLDC----RRWAGAPLLIS 63
PA S +++PGK L+L AS D P + L C R W G PL +
Sbjct: 80 PAISPRTYIPGKVGD---------LILVEASLPKDSPAPLVHLSCELRVRGWKGTPLHLG 130
Query: 64 PETGRP 69
E G P
Sbjct: 131 EECGAP 136
>gi|239745889 PREDICTED: hypothetical protein XP_002343609 [Homo
sapiens]
Length = 207
Score = 29.3 bits (64), Expect = 1.2
Identities = 22/66 (33%), Positives = 28/66 (42%), Gaps = 13/66 (19%)
Query: 8 PAGSAPSFLPGKGSTGGVAPESLTLVLSAASPLVDPRWPRIPLDC----RRWAGAPLLIS 63
PA S +++PGK L+L AS D P + L C R W G PL +
Sbjct: 80 PAISPRTYIPGKVGD---------LILVEASLPKDSPAPLVHLSCELRVRGWKGTPLHLG 130
Query: 64 PETGRP 69
E G P
Sbjct: 131 EECGAP 136
>gi|169164452 PREDICTED: similar to hCG1643669 [Homo sapiens]
Length = 157
Score = 28.9 bits (63), Expect = 1.6
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 50 LDCRRWAGAPLLISPETGRPAPSTRVVS 77
+DCR G L++SP+T P+P T S
Sbjct: 118 VDCRALNGGDLVLSPKTTPPSPDTEAPS 145
>gi|169164815 PREDICTED: similar to hCG1643669 [Homo sapiens]
Length = 157
Score = 28.9 bits (63), Expect = 1.6
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 50 LDCRRWAGAPLLISPETGRPAPSTRVVS 77
+DCR G L++SP+T P+P T S
Sbjct: 118 VDCRALNGGDLVLSPKTTPPSPDTEAPS 145
>gi|169163509 PREDICTED: hypothetical protein LOC100131482 [Homo
sapiens]
Length = 157
Score = 28.9 bits (63), Expect = 1.6
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 50 LDCRRWAGAPLLISPETGRPAPSTRVVS 77
+DCR G L++SP+T P+P T S
Sbjct: 118 VDCRALNGGDLVLSPKTTPPSPDTEAPS 145
>gi|31324577 molecule interacting with Rab13 [Homo sapiens]
Length = 863
Score = 28.5 bits (62), Expect = 2.1
Identities = 23/71 (32%), Positives = 25/71 (35%), Gaps = 1/71 (1%)
Query: 19 KGSTGGVAPESLTLVLSAASPLVDPRW-PRIPLDCRRWAGAPLLISPETGRPAPSTRVVS 77
K GG S A P P P+IP R L SP GRP P+ R S
Sbjct: 250 KDVPGGGPSSSAPAGAEADGPKASPEARPQIPTKPRVPGKLQELASPPAGRPTPAPRKAS 309
Query: 78 FRAVPRSWLPR 88
P PR
Sbjct: 310 ESTTPAPPTPR 320
>gi|117938768 GNAS complex locus alex [Homo sapiens]
Length = 626
Score = 28.1 bits (61), Expect = 2.8
Identities = 22/58 (37%), Positives = 26/58 (44%), Gaps = 8/58 (13%)
Query: 46 PRIPLDCRRWAGAPLLISPETGRPAPSTRVVSFRAVPRSWLP----RGLLTAVGSGHS 99
P +P + AG PL P P P R +S PRS LP RGLL + G S
Sbjct: 439 PLLPPGQPKSAGRPLQPLP----PGPDARSISDPPAPRSRLPIRLLRGLLARLPGGAS 492
>gi|169194585 PREDICTED: similar to hCG1793014 [Homo sapiens]
Length = 366
Score = 28.1 bits (61), Expect = 2.8
Identities = 19/51 (37%), Positives = 24/51 (47%), Gaps = 3/51 (5%)
Query: 7 APAGSAPSFLPGKGSTGGVAPESLTLVLSAASPLVDPRWPRIPLD--CRRW 55
A SAP+ +PG+G AP +TL A P + P P P C RW
Sbjct: 274 AGVASAPARIPGRGGDRRFAPGKVTLSGPRAGPPLAPA-PPPPQSGRCPRW 323
>gi|169636420 carbonic anhydrase IX precursor [Homo sapiens]
Length = 459
Score = 28.1 bits (61), Expect = 2.8
Identities = 22/84 (26%), Positives = 33/84 (39%), Gaps = 16/84 (19%)
Query: 42 DPRWPRIPLDCRRWAGAPLLISPETGRPAPSTR---VVSFRAVP-------------RSW 85
DP WPR+ C +P+ I P+ P+ R ++ F+ P +
Sbjct: 146 DPPWPRVSPACAGRFQSPVDIRPQLAAFCPALRPLELLGFQLPPLPELRLRNNGHSVQLT 205
Query: 86 LPRGLLTAVGSGHSDADRGLNARW 109
LP GL A+G G L+ W
Sbjct: 206 LPPGLEMALGPGREYRALQLHLHW 229
>gi|90991712 CD207 antigen, langerin [Homo sapiens]
Length = 328
Score = 28.1 bits (61), Expect = 2.8
Identities = 18/40 (45%), Positives = 21/40 (52%)
Query: 8 PAGSAPSFLPGKGSTGGVAPESLTLVLSAASPLVDPRWPR 47
P S PS +PGK T A LTLVL A+ L +PR
Sbjct: 27 PPKSGPSLVPGKTPTVRAALICLTLVLVASVLLQAVLYPR 66
>gi|209862845 nuclear factor of activated T-cells, cytoplasmic,
calcineurin-dependent 4 isoform 1 [Homo sapiens]
Length = 964
Score = 27.7 bits (60), Expect = 3.6
Identities = 19/50 (38%), Positives = 22/50 (44%), Gaps = 2/50 (4%)
Query: 21 STGGVAPESLTLVLSAASPLVDPRWPRIPLDCRRW--AGAPLLISPETGR 68
S GG PE L+LSA P P P RR+ +G P SP R
Sbjct: 300 SPGGRGPEDSWLLLSAPGPTPASPRPASPCGKRRYSSSGTPSSASPALSR 349
>gi|27886563 nuclear factor of activated T-cells, cytoplasmic,
calcineurin-dependent 4 isoform 2 [Homo sapiens]
Length = 902
Score = 27.7 bits (60), Expect = 3.6
Identities = 19/50 (38%), Positives = 22/50 (44%), Gaps = 2/50 (4%)
Query: 21 STGGVAPESLTLVLSAASPLVDPRWPRIPLDCRRW--AGAPLLISPETGR 68
S GG PE L+LSA P P P RR+ +G P SP R
Sbjct: 237 SPGGRGPEDSWLLLSAPGPTPASPRPASPCGKRRYSSSGTPSSASPALSR 286
>gi|169201955 PREDICTED: similar to hCG1793014 [Homo sapiens]
Length = 366
Score = 27.7 bits (60), Expect = 3.6
Identities = 19/51 (37%), Positives = 24/51 (47%), Gaps = 3/51 (5%)
Query: 7 APAGSAPSFLPGKGSTGGVAPESLTLVLSAASPLVDPRWPRIPLD--CRRW 55
A SAP+ +PG+G AP +TL A P + P P P C RW
Sbjct: 274 AGVASAPARIPGRGGDRRFAPGKVTLGGPRAGPPLAPA-PPPPQSGRCPRW 323
>gi|239749704 PREDICTED: hypothetical protein XP_002347124 [Homo
sapiens]
Length = 80
Score = 27.7 bits (60), Expect = 3.6
Identities = 14/33 (42%), Positives = 17/33 (51%)
Query: 56 AGAPLLISPETGRPAPSTRVVSFRAVPRSWLPR 88
AGAPL +P PAP R + A P + PR
Sbjct: 47 AGAPLPSTPPVSNPAPPPRPIPRAATPLTPRPR 79
>gi|169192125 PREDICTED: similar to UNCoordinated family member
(unc-44) [Homo sapiens]
Length = 393
Score = 27.7 bits (60), Expect = 3.6
Identities = 19/51 (37%), Positives = 24/51 (47%), Gaps = 3/51 (5%)
Query: 7 APAGSAPSFLPGKGSTGGVAPESLTLVLSAASPLVDPRWPRIPLD--CRRW 55
A SAP+ +PG+G AP +TL A P + P P P C RW
Sbjct: 301 AGVASAPARIPGRGGDRRFAPGKVTLGGPRAGPPLAPA-PPPPQSGRCPRW 350
>gi|169217249 PREDICTED: hypothetical protein [Homo sapiens]
Length = 202
Score = 27.3 bits (59), Expect = 4.7
Identities = 18/50 (36%), Positives = 23/50 (46%), Gaps = 8/50 (16%)
Query: 49 PLDCRRWAGAPLLISPETGRPAPSTRVVSFRAVPRSWLPRGLLTAVGSGH 98
P R + +P + P R PS VPRS R L+ A+GSGH
Sbjct: 86 PCSAARISSSPGGLPPVLSRVHPS--------VPRSVSQRSLMEALGSGH 127
>gi|239754641 PREDICTED: hypothetical protein [Homo sapiens]
Length = 229
Score = 27.3 bits (59), Expect = 4.7
Identities = 15/49 (30%), Positives = 21/49 (42%)
Query: 39 PLVDPRWPRIPLDCRRWAGAPLLISPETGRPAPSTRVVSFRAVPRSWLP 87
P + PR PR P C G+P + T R S + + P +W P
Sbjct: 76 PSLRPRCPRRPGQCNDGRGSPPALPSSTWRTTWSCIRCRWASGPAAWWP 124
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.320 0.138 0.448
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,957,104
Number of Sequences: 37866
Number of extensions: 353100
Number of successful extensions: 1010
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 49
Number of HSP's that attempted gapping in prelim test: 977
Number of HSP's gapped (non-prelim): 79
length of query: 147
length of database: 18,247,518
effective HSP length: 93
effective length of query: 54
effective length of database: 14,725,980
effective search space: 795202920
effective search space used: 795202920
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (26.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.