Guide to the Human Genome
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Name: CD207 Sequence: fasta or formatted (328aa) NCBI GI: 90991712
Description:

CD207 antigen, langerin

Referenced in:

Lectin Families

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.4         21           2
 C cysteine            1.5          5           1
 D aspartate           4.0         13           2
 E glutamate           6.1         20           2
 F phenylalanine       3.7         12           1
 G glycine             5.5         18           2
 H histidine           0.9          3           1
 I isoleucine          5.2         17           1
 K lysine              7.6         25           2
 L leucine             9.8         32           2
 M methionine          1.8          6           1
 N asparagine          5.8         19           2
 P proline             5.8         19           3
 Q glutamine           5.2         17           1
 R arginine            3.4         11           1
 S serine              8.8         29           1
 T threonine           5.8         19           1
 V valine              7.3         24           2
 W tryptophan          2.7          9           1
 Y tyrosine            2.7          9           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   CD207 antigen, langerin 
CLEC4F                0.192   C-type lectin, superfamily member 13 
CLEC4M                0.117   C-type lectin domain family 4, member M isoform 11 ...
CLEC4M                0.112   C-type lectin domain family 4, member M isoform 9 [...
CLEC4M                0.112   C-type lectin domain family 4, member M isoform 12 ...
CLEC4M                0.112   C-type lectin domain family 4, member M isoform 2 [...
CLEC4M                0.112   C-type lectin domain family 4, member M isoform 8 [...
CLEC4M                0.112   C-type lectin domain family 4, member M isoform 1 [H...
CLEC4M                0.111   C-type lectin domain family 4, member M isoform 7 [...
CLEC4E                0.106   C-type lectin domain family 4, member E 
CD209                 0.100   CD209 molecule isoform 7 
CD209                 0.100   CD209 molecule isoform 5 
CD209                 0.095   CD209 molecule isoform 3 
CD209                 0.095   CD209 molecule isoform 6 
CD209                 0.095   CD209 molecule isoform 1 
CLEC4G                0.092   C-type lectin domain family 4, member G 
CLEC4D                0.092   C-type lectin domain family 4, member D 
CLEC6A                0.090   dectin-2 
CD209                 0.089   CD209 molecule isoform 4 
FCER2                 0.089   Fc fragment of IgE, low affinity II, receptor for (C...
CLEC10A               0.087   C-type lectin, superfamily member 14 isoform 2 [Homo...
CLEC4A                0.086   C-type lectin domain family 4, member A isoform 3 [...
CLEC4A                0.086   C-type lectin domain family 4, member A isoform 1 [Ho...
COLEC12               0.084   collectin sub-family member 12 
CD209                 0.084   CD209 molecule isoform 8 
CLEC4A                0.084   C-type lectin domain family 4, member A isoform 2 [H...
CLEC4A                0.084   C-type lectin domain family 4, member A isoform 4 [H...
ASGR2                 0.083   asialoglycoprotein receptor 2 isoform b 
ACAN                  0.081   aggrecan isoform 2 precursor 
ACAN                  0.081   aggrecan isoform 1 precursor 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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