Guide to the Human Genome
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Name: LOC644538 Sequence: fasta or formatted (202aa) NCBI GI: 169217249
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Other entries for this name:
alt prot {161aa} PREDICTED: hypothetical protein
alt prot {161aa} PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.9         20           4
 C cysteine            1.5          3           1
 D aspartate           4.0          8           1
 E glutamate           1.0          2           1
 F phenylalanine       3.0          6           2
 G glycine             9.9         20           2
 H histidine           3.0          6           1
 I isoleucine          2.5          5           1
 K lysine              2.0          4           1
 L leucine            10.9         22           4
 M methionine          2.5          5           1
 N asparagine          2.5          5           1
 P proline             5.9         12           2
 Q glutamine           3.0          6           1
 R arginine            8.4         17           2
 S serine             12.4         25           3
 T threonine           5.0         10           1
 V valine              7.4         15           2
 W tryptophan          2.0          4           1
 Y tyrosine            3.5          7           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC644538             0.709   PREDICTED: hypothetical protein 
LOC644538             0.709   PREDICTED: hypothetical protein 
LOC100129361          0.161   PREDICTED: similar to mCG115122 
LOC100129361          0.161   PREDICTED: similar to mCG115122 
LOC100129361          0.161   PREDICTED: similar to mCG115122 
KIAA1949              0.034   phostensin 
KIAA1949              0.034   phostensin 
MEF2A                 0.023   myocyte enhancer factor 2A isoform 4 
MEF2A                 0.023   myocyte enhancer factor 2A isoform 2 
MEF2A                 0.023   myocyte enhancer factor 2A isoform 1 
TAF10                 0.021   TBP-related factor 10 
PTPN23                0.021   protein tyrosine phosphatase, non-receptor type 23 [...
HRNR                  0.018   hornerin 
LOC100293818          0.018   PREDICTED: hypothetical protein 
LOC100290009          0.018   PREDICTED: hypothetical protein XP_002346608 
POU3F3                0.018   POU class 3 homeobox 3 
PAWR                  0.016   PRKC, apoptosis, WT1, regulator 
LOC100292419          0.016   PREDICTED: hypothetical protein 
LOC100290297          0.016   PREDICTED: hypothetical protein XP_002347742 
LOC100288674          0.016   PREDICTED: hypothetical protein XP_002343540 
LGALS3                0.016   galectin 3 
LOC100288104          0.013   PREDICTED: hypothetical protein XP_002342450 
LOC100293294          0.013   PREDICTED: hypothetical protein 
DAZAP1                0.013   DAZ associated protein 1 isoform a 
DAZAP1                0.013   DAZ associated protein 1 isoform b 
GSX2                  0.013   GS homeobox 2 
LOC389813             0.013   similar to CG15216-PA 
LOC100286949          0.013   PREDICTED: hypothetical protein XP_002342730 
SILV                  0.013   silver homolog 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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