Guide to the Human Genome
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Name: LOC100131482 Sequence: fasta or formatted (157aa) NCBI GI: 169164815
Description:

PREDICTED: similar to hCG1643669

Not currently referenced in the text

Other entries for this name:
alt mRNA {157aa} PREDICTED: hypothetical protein LOC100131482
alt mRNA {157aa} PREDICTED: similar to hCG1643669
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             3.8          6           1
 C cysteine            4.5          7           2
 D aspartate           8.3         13           1
 E glutamate           4.5          7           1
 F phenylalanine       5.1          8           3
 G glycine             6.4         10           2
 H histidine           3.2          5           1
 I isoleucine          7.0         11           2
 K lysine              7.0         11           1
 L leucine             7.6         12           2
 M methionine          7.0         11           1
 N asparagine          4.5          7           2
 P proline             5.7          9           2
 Q glutamine           1.9          3           1
 R arginine            1.9          3           1
 S serine              4.5          7           2
 T threonine           5.1          8           2
 V valine              8.3         13           2
 W tryptophan          1.9          3           1
 Y tyrosine            1.9          3           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to hCG1643669 
LOC100131482          1.000   PREDICTED: similar to hCG1643669 
LOC100131482          1.000   PREDICTED: hypothetical protein LOC100131482 
TXNL4A                0.616   thioredoxin-like 4A 
TXNL4B                0.155   thioredoxin-like 4B 
TXNL4B                0.155   thioredoxin-like 4B 
TXNL4B                0.155   thioredoxin-like 4B 
GLRX3                 0.029   glutaredoxin 3 
RHAG                  0.016   Rh-associated glycoprotein 
LOC100291967          0.013   PREDICTED: similar to hCG2041645 
LOC100289892          0.013   PREDICTED: hypothetical protein XP_002347457 
LOC100289373          0.013   PREDICTED: hypothetical protein XP_002344117 
LGR4                  0.010   leucine-rich repeat-containing G protein-coupled re...
ASAH1                 0.006   N-acylsphingosine amidohydrolase 1 isoform c 
ASAH1                 0.006   N-acylsphingosine amidohydrolase 1 isoform a prepro...
ASAH1                 0.006   N-acylsphingosine amidohydrolase 1 isoform b 
ANKAR                 0.006   ankyrin and armadillo repeat containing 
RPTOR                 0.006   raptor isoform 1 
RPTOR                 0.006   raptor isoform 2 
MEP1A                 0.006   meprin A alpha 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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