Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: LOC100292351 Sequence: fasta or formatted (274aa) NCBI GI: 239755954
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            10.9         30           2
 C cysteine            1.5          4           1
 D aspartate           1.5          4           1
 E glutamate           4.4         12           1
 F phenylalanine       2.6          7           1
 G glycine             9.5         26           2
 H histidine           4.7         13           1
 I isoleucine          1.5          4           1
 K lysine              1.8          5           1
 L leucine             7.7         21           2
 M methionine          0.7          2           1
 N asparagine          1.5          4           1
 P proline            13.9         38           2
 Q glutamine           3.6         10           1
 R arginine            9.5         26           4
 S serine             12.0         33           2
 T threonine           6.2         17           2
 V valine              4.7         13           2
 W tryptophan          1.5          4           2
 Y tyrosine            0.4          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100294389          1.000   PREDICTED: hypothetical protein 
NACA                  0.048   nascent polypeptide-associated complex alpha subuni...
LOC100293840          0.035   PREDICTED: hypothetical protein 
LOC100290046          0.035   PREDICTED: hypothetical protein XP_002346831 
LOC100287550          0.035   PREDICTED: hypothetical protein XP_002342664 
LOC100294262          0.035   PREDICTED: hypothetical protein XP_002344073 
LOC100294248          0.035   PREDICTED: hypothetical protein 
LOC100294135          0.035   PREDICTED: hypothetical protein 
PCLO                  0.028   piccolo isoform 2 
PCLO                  0.028   piccolo isoform 1 
AGAP2                 0.028   centaurin, gamma 1 isoform PIKE-L 
SRRM1                 0.028   serine/arginine repetitive matrix 1 
SRCAP                 0.024   Snf2-related CBP activator protein 
RELA                  0.022   v-rel reticuloendotheliosis viral oncogene homolog ...
RELA                  0.022   v-rel reticuloendotheliosis viral oncogene homolog ...
TAF4                  0.022   TBP-associated factor 4 
SEC24A                0.022   SEC24 related gene family, member A 
PRG4                  0.022   proteoglycan 4 isoform D 
PRG4                  0.022   proteoglycan 4 isoform C 
PRG4                  0.022   proteoglycan 4 isoform B 
PRG4                  0.022   proteoglycan 4 isoform A 
MUC5B                 0.022   mucin 5, subtype B, tracheobronchial 
FOXD2                 0.022   forkhead box D2 
SYNJ1                 0.020   synaptojanin 1 isoform a 
SYNJ1                 0.020   synaptojanin 1 isoform b 
PNMAL1                0.020   PNMA-like 1 isoform a 
PRB3                  0.020   proline-rich protein BstNI subfamily 3 precursor [H...
ULK1                  0.018   Unc-51-like kinase 1 
LOC100294213          0.018   PREDICTED: hypothetical protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press