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Search of human proteins with 239755879
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239755879 PREDICTED: hypothetical protein XP_002344729 [Homo
sapiens]
(90 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239755879 PREDICTED: hypothetical protein XP_002344729 [Homo ... 192 4e-50
gi|239750409 PREDICTED: hypothetical protein XP_002347416 [Homo ... 192 4e-50
gi|239744709 PREDICTED: hypothetical protein XP_002343201 [Homo ... 192 4e-50
gi|41350201 epsin 1 isoform c [Homo sapiens] 37 0.003
gi|194248095 epsin 1 isoform b [Homo sapiens] 37 0.003
gi|194272148 epsin 1 isoform a [Homo sapiens] 37 0.003
gi|239755398 PREDICTED: hypothetical protein [Homo sapiens] 37 0.004
gi|239754458 PREDICTED: hypothetical protein [Homo sapiens] 37 0.004
gi|239749008 PREDICTED: hypothetical protein XP_002346879 [Homo ... 37 0.004
gi|239743028 PREDICTED: hypothetical protein XP_002342721 [Homo ... 37 0.004
gi|148762978 similar to CG15216-PA [Homo sapiens] 37 0.004
gi|239752764 PREDICTED: hypothetical protein [Homo sapiens] 36 0.007
gi|239741731 PREDICTED: hypothetical protein XP_002342307 [Homo ... 36 0.007
gi|209413756 synapsin III isoform IIIg [Homo sapiens] 35 0.010
gi|209413752 synapsin III isoform IIIa [Homo sapiens] 35 0.010
gi|170016069 zinc finger, CCHC domain containing 2 [Homo sapiens] 35 0.013
gi|239754297 PREDICTED: hypothetical protein [Homo sapiens] 35 0.016
gi|239748836 PREDICTED: hypothetical protein XP_002346833 [Homo ... 35 0.016
gi|239742863 PREDICTED: hypothetical protein XP_002342665 [Homo ... 35 0.016
gi|19924099 synapsin I isoform Ia [Homo sapiens] 34 0.022
gi|19924097 synapsin I isoform Ib [Homo sapiens] 34 0.022
gi|40805852 thrombospondin type I domain-containing 1 isoform 2 ... 34 0.022
gi|8923894 thrombospondin type I domain-containing 1 isoform 1 [... 34 0.022
gi|169211642 PREDICTED: hypothetical protein [Homo sapiens] 34 0.028
gi|169210857 PREDICTED: similar to RIKEN cDNA E130309D14 [Homo s... 34 0.028
gi|33356148 formin-like 1 [Homo sapiens] 34 0.028
gi|156071470 hyperpolarization activated cyclic nucleotide-gated... 33 0.037
gi|239754368 PREDICTED: hypothetical protein [Homo sapiens] 33 0.037
gi|239748915 PREDICTED: hypothetical protein XP_002346855 [Homo ... 33 0.037
gi|239742939 PREDICTED: hypothetical protein XP_002342693 [Homo ... 33 0.037
>gi|239755879 PREDICTED: hypothetical protein XP_002344729 [Homo
sapiens]
Length = 90
Score = 192 bits (489), Expect = 4e-50
Identities = 90/90 (100%), Positives = 90/90 (100%)
Query: 1 MSPKGTTFSTTETRALEPAWGALPPAADFDPGSPVASRPLSRTRPSRIRSPELAARPAPL 60
MSPKGTTFSTTETRALEPAWGALPPAADFDPGSPVASRPLSRTRPSRIRSPELAARPAPL
Sbjct: 1 MSPKGTTFSTTETRALEPAWGALPPAADFDPGSPVASRPLSRTRPSRIRSPELAARPAPL 60
Query: 61 CAGADRRSPGRPPAGPSPGNTHQPERPWEA 90
CAGADRRSPGRPPAGPSPGNTHQPERPWEA
Sbjct: 61 CAGADRRSPGRPPAGPSPGNTHQPERPWEA 90
>gi|239750409 PREDICTED: hypothetical protein XP_002347416 [Homo
sapiens]
Length = 90
Score = 192 bits (489), Expect = 4e-50
Identities = 90/90 (100%), Positives = 90/90 (100%)
Query: 1 MSPKGTTFSTTETRALEPAWGALPPAADFDPGSPVASRPLSRTRPSRIRSPELAARPAPL 60
MSPKGTTFSTTETRALEPAWGALPPAADFDPGSPVASRPLSRTRPSRIRSPELAARPAPL
Sbjct: 1 MSPKGTTFSTTETRALEPAWGALPPAADFDPGSPVASRPLSRTRPSRIRSPELAARPAPL 60
Query: 61 CAGADRRSPGRPPAGPSPGNTHQPERPWEA 90
CAGADRRSPGRPPAGPSPGNTHQPERPWEA
Sbjct: 61 CAGADRRSPGRPPAGPSPGNTHQPERPWEA 90
>gi|239744709 PREDICTED: hypothetical protein XP_002343201 [Homo
sapiens]
Length = 90
Score = 192 bits (489), Expect = 4e-50
Identities = 90/90 (100%), Positives = 90/90 (100%)
Query: 1 MSPKGTTFSTTETRALEPAWGALPPAADFDPGSPVASRPLSRTRPSRIRSPELAARPAPL 60
MSPKGTTFSTTETRALEPAWGALPPAADFDPGSPVASRPLSRTRPSRIRSPELAARPAPL
Sbjct: 1 MSPKGTTFSTTETRALEPAWGALPPAADFDPGSPVASRPLSRTRPSRIRSPELAARPAPL 60
Query: 61 CAGADRRSPGRPPAGPSPGNTHQPERPWEA 90
CAGADRRSPGRPPAGPSPGNTHQPERPWEA
Sbjct: 61 CAGADRRSPGRPPAGPSPGNTHQPERPWEA 90
>gi|41350201 epsin 1 isoform c [Homo sapiens]
Length = 550
Score = 37.4 bits (85), Expect = 0.003
Identities = 27/79 (34%), Positives = 34/79 (43%), Gaps = 6/79 (7%)
Query: 15 ALEPAWGALPPAADFDPGSPVASRPLSRTRPSR--IRSPELAARPAPLCAGADRRSPGRP 72
+L A G+ PPAA P P P S P+ + L +RP P GA +P P
Sbjct: 421 SLAEAVGSPPPAATPTPTPPTRKTPESFLGPNAALVDLDSLVSRPGPTPPGAKASNPFLP 480
Query: 73 PAGPSPG----NTHQPERP 87
GP+ G N QP P
Sbjct: 481 GGGPATGPSVTNPFQPAPP 499
>gi|194248095 epsin 1 isoform b [Homo sapiens]
Length = 576
Score = 37.4 bits (85), Expect = 0.003
Identities = 27/79 (34%), Positives = 34/79 (43%), Gaps = 6/79 (7%)
Query: 15 ALEPAWGALPPAADFDPGSPVASRPLSRTRPSR--IRSPELAARPAPLCAGADRRSPGRP 72
+L A G+ PPAA P P P S P+ + L +RP P GA +P P
Sbjct: 447 SLAEAVGSPPPAATPTPTPPTRKTPESFLGPNAALVDLDSLVSRPGPTPPGAKASNPFLP 506
Query: 73 PAGPSPG----NTHQPERP 87
GP+ G N QP P
Sbjct: 507 GGGPATGPSVTNPFQPAPP 525
>gi|194272148 epsin 1 isoform a [Homo sapiens]
Length = 662
Score = 37.4 bits (85), Expect = 0.003
Identities = 27/79 (34%), Positives = 34/79 (43%), Gaps = 6/79 (7%)
Query: 15 ALEPAWGALPPAADFDPGSPVASRPLSRTRPSR--IRSPELAARPAPLCAGADRRSPGRP 72
+L A G+ PPAA P P P S P+ + L +RP P GA +P P
Sbjct: 533 SLAEAVGSPPPAATPTPTPPTRKTPESFLGPNAALVDLDSLVSRPGPTPPGAKASNPFLP 592
Query: 73 PAGPSPG----NTHQPERP 87
GP+ G N QP P
Sbjct: 593 GGGPATGPSVTNPFQPAPP 611
>gi|239755398 PREDICTED: hypothetical protein [Homo sapiens]
Length = 359
Score = 36.6 bits (83), Expect = 0.004
Identities = 23/55 (41%), Positives = 28/55 (50%), Gaps = 5/55 (9%)
Query: 34 PVASRPLSRTRPSRIRSPELAARPAPLCAGADRRSPGRPPAGPSPGNTHQPERPW 88
P++SRPLSRT P E+ RP+ G D PGRP A + Q RPW
Sbjct: 30 PMSSRPLSRTPPH--GGGEMVRRPSGARGGGD---PGRPGARAFSAASCQAGRPW 79
>gi|239754458 PREDICTED: hypothetical protein [Homo sapiens]
Length = 180
Score = 36.6 bits (83), Expect = 0.004
Identities = 28/79 (35%), Positives = 37/79 (46%), Gaps = 12/79 (15%)
Query: 12 ETRALEPAWGALPPAADFDPGSPVA---SRPLSRTRPSRIRS-PELAARPAPLCAGADRR 67
ET + P ALPP PG+P A +P+SR + +R P+ RP PL A R
Sbjct: 29 ETLSPSPRAAALPPLQQRPPGAPGALGRPKPVSRGPRAGLREWPQQPWRPGPLGAPLQDR 88
Query: 68 SP--------GRPPAGPSP 78
+P RP A P+P
Sbjct: 89 APSAHVPGSASRPTATPAP 107
>gi|239749008 PREDICTED: hypothetical protein XP_002346879 [Homo
sapiens]
Length = 180
Score = 36.6 bits (83), Expect = 0.004
Identities = 28/79 (35%), Positives = 37/79 (46%), Gaps = 12/79 (15%)
Query: 12 ETRALEPAWGALPPAADFDPGSPVA---SRPLSRTRPSRIRS-PELAARPAPLCAGADRR 67
ET + P ALPP PG+P A +P+SR + +R P+ RP PL A R
Sbjct: 29 ETLSPSPRAAALPPLQQRPPGAPGALGRPKPVSRGPRAGLREWPQQPWRPGPLGAPLQDR 88
Query: 68 SP--------GRPPAGPSP 78
+P RP A P+P
Sbjct: 89 APSAHVPGSASRPTATPAP 107
>gi|239743028 PREDICTED: hypothetical protein XP_002342721 [Homo
sapiens]
Length = 180
Score = 36.6 bits (83), Expect = 0.004
Identities = 28/79 (35%), Positives = 37/79 (46%), Gaps = 12/79 (15%)
Query: 12 ETRALEPAWGALPPAADFDPGSPVA---SRPLSRTRPSRIRS-PELAARPAPLCAGADRR 67
ET + P ALPP PG+P A +P+SR + +R P+ RP PL A R
Sbjct: 29 ETLSPSPRAAALPPLQQRPPGAPGALGRPKPVSRGPRAGLREWPQQPWRPGPLGAPLQDR 88
Query: 68 SP--------GRPPAGPSP 78
+P RP A P+P
Sbjct: 89 APSAHVPGSASRPTATPAP 107
>gi|148762978 similar to CG15216-PA [Homo sapiens]
Length = 976
Score = 36.6 bits (83), Expect = 0.004
Identities = 25/62 (40%), Positives = 32/62 (51%), Gaps = 12/62 (19%)
Query: 17 EPAWGALPPAADFDPGSPVASRPLSRTRPSRIRSPELAARPAPLCAGADRRSPGRPPAGP 76
EPA+ AL A+ P+ +P R P R+ APLCA A R +P PPAGP
Sbjct: 133 EPAYPALRALAN--ELHPIKLQP-QRGGPGRV---------APLCAAAGRCAPPEPPAGP 180
Query: 77 SP 78
+P
Sbjct: 181 AP 182
>gi|239752764 PREDICTED: hypothetical protein [Homo sapiens]
Length = 370
Score = 35.8 bits (81), Expect = 0.007
Identities = 33/91 (36%), Positives = 39/91 (42%), Gaps = 14/91 (15%)
Query: 2 SPKGTTFSTT----ETRALEPAWGALPPAADFDPGSPVASRPLSRTRPSRIRSPELAARP 57
SP T F+ T TRAL PA G + DPG V RP + + SP A P
Sbjct: 243 SPAHTHFTLTLAEAHTRALTPARGG----GEGDPGPIVGGRPENEDSLASQTSP--PAPP 296
Query: 58 APLCAGADRRSP----GRPPAGPSPGNTHQP 84
AP+ + A RSP G P G QP
Sbjct: 297 APVPSTARARSPGARRGARELAPRAGRRRQP 327
>gi|239741731 PREDICTED: hypothetical protein XP_002342307 [Homo
sapiens]
Length = 316
Score = 35.8 bits (81), Expect = 0.007
Identities = 25/64 (39%), Positives = 27/64 (42%), Gaps = 6/64 (9%)
Query: 25 PAADFDPGSPVASRPLSRTRPSRIRSPELAARPAPLCAGADRRSPGRPPAGPSP-GNTHQ 83
P DP S R L+R PSR P P PLC +P PPA P P H
Sbjct: 198 PPGPHDPTSRGPGRLLTREPPSRKLPP-----PLPLCRSRWVLAPPPPPAPPGPNAAAHP 252
Query: 84 PERP 87
P RP
Sbjct: 253 PLRP 256
Score = 28.5 bits (62), Expect = 1.2
Identities = 19/68 (27%), Positives = 23/68 (33%), Gaps = 11/68 (16%)
Query: 20 WGALPPAADFDPGSPVASRPLSRTRPSRIRSPELAARPAPLCAGADRRSPGRPPAGPSPG 79
W PP PG A+ P R +R++ P R PG P GP G
Sbjct: 233 WVLAPPPPPAPPGPNAAAHPPLRPPRARLQDPV-----------DPERCPGGPSRGPGHG 281
Query: 80 NTHQPERP 87
E P
Sbjct: 282 THAHSELP 289
>gi|209413756 synapsin III isoform IIIg [Homo sapiens]
Length = 579
Score = 35.4 bits (80), Expect = 0.010
Identities = 25/83 (30%), Positives = 34/83 (40%), Gaps = 4/83 (4%)
Query: 2 SPKGTTFSTTETRALEPAWGALPPAADFDPGSPVASRPLSRTRPSRIRSP--ELAARPAP 59
SP S + L P G+ P PGSP SR S + P++ P LA++P P
Sbjct: 454 SPSQQRLSPQGQQPLSPQSGS--PQQQRSPGSPQLSRASSGSSPNQASKPGATLASQPRP 511
Query: 60 LCAGADRRSPGRPPAGPSPGNTH 82
G G P+P + H
Sbjct: 512 PVQGRSTSQQGEESKKPAPPHPH 534
>gi|209413752 synapsin III isoform IIIa [Homo sapiens]
Length = 580
Score = 35.4 bits (80), Expect = 0.010
Identities = 25/83 (30%), Positives = 34/83 (40%), Gaps = 4/83 (4%)
Query: 2 SPKGTTFSTTETRALEPAWGALPPAADFDPGSPVASRPLSRTRPSRIRSP--ELAARPAP 59
SP S + L P G+ P PGSP SR S + P++ P LA++P P
Sbjct: 455 SPSQQRLSPQGQQPLSPQSGS--PQQQRSPGSPQLSRASSGSSPNQASKPGATLASQPRP 512
Query: 60 LCAGADRRSPGRPPAGPSPGNTH 82
G G P+P + H
Sbjct: 513 PVQGRSTSQQGEESKKPAPPHPH 535
>gi|170016069 zinc finger, CCHC domain containing 2 [Homo sapiens]
Length = 1178
Score = 35.0 bits (79), Expect = 0.013
Identities = 29/83 (34%), Positives = 37/83 (44%), Gaps = 9/83 (10%)
Query: 5 GTTFSTTETRALEPAWG---ALPPAADFDPGSPVASRPLSRTRPSRIRSPELAARPAPLC 61
GT T + + PA G A PPA+ PGSP+A+ L S + + A P P
Sbjct: 890 GTVPQPTNVKVVLPAAGLSAAQPPASYPLPGSPLAAGVLPSQNSSVLST--AATSPQPAS 947
Query: 62 AGADRRSPGRPPAGPSPGNTHQP 84
AG + PPA P TH P
Sbjct: 948 AGISQAQATVPPAVP----THTP 966
Score = 29.6 bits (65), Expect = 0.53
Identities = 21/58 (36%), Positives = 22/58 (37%), Gaps = 9/58 (15%)
Query: 39 PLSRTRPSR----IRSPELAARPAPLCAGADRRS-----PGRPPAGPSPGNTHQPERP 87
PL T P+ PE ARP RR P PPAGPS G P P
Sbjct: 7 PLKPTHPAEPPPEAEEPEADARPGAKAPSRRRRDCRPPPPPPPPAGPSRGPLPPPPPP 64
Score = 28.5 bits (62), Expect = 1.2
Identities = 22/72 (30%), Positives = 24/72 (33%)
Query: 13 TRALEPAWGALPPAADFDPGSPVASRPLSRTRPSRIRSPELAARPAPLCAGADRRSPGRP 72
T EP A P AD PG+ SR RP P PL R G P
Sbjct: 11 THPAEPPPEAEEPEADARPGAKAPSRRRRDCRPPPPPPPPAGPSRGPLPPPPPPRGLGPP 70
Query: 73 PAGPSPGNTHQP 84
AG + P
Sbjct: 71 VAGGAAAGAGMP 82
>gi|239754297 PREDICTED: hypothetical protein [Homo sapiens]
Length = 175
Score = 34.7 bits (78), Expect = 0.016
Identities = 31/88 (35%), Positives = 37/88 (42%), Gaps = 18/88 (20%)
Query: 2 SPKGTTFSTTETRALEPAWGALPPAADFDPGSPVASR-PLSRTRPSRIRSPELAARPAPL 60
+P G T+++ ET F GS A R P +R SP LAARPA
Sbjct: 51 APAGRTWASPET---------------FSSGSRRARRWPCGAPACTRTLSPALAARPAGR 95
Query: 61 --CAGADRRSPGRPPAGPSPGNTHQPER 86
CAG RR R PA QP+R
Sbjct: 96 GPCAGRPRRCGCRDPADSRARGCCQPQR 123
>gi|239748836 PREDICTED: hypothetical protein XP_002346833 [Homo
sapiens]
Length = 175
Score = 34.7 bits (78), Expect = 0.016
Identities = 31/88 (35%), Positives = 37/88 (42%), Gaps = 18/88 (20%)
Query: 2 SPKGTTFSTTETRALEPAWGALPPAADFDPGSPVASR-PLSRTRPSRIRSPELAARPAPL 60
+P G T+++ ET F GS A R P +R SP LAARPA
Sbjct: 51 APAGRTWASPET---------------FSSGSRRARRWPCGAPACTRTLSPALAARPAGR 95
Query: 61 --CAGADRRSPGRPPAGPSPGNTHQPER 86
CAG RR R PA QP+R
Sbjct: 96 GPCAGRPRRCGCRDPADSRARGCCQPQR 123
>gi|239742863 PREDICTED: hypothetical protein XP_002342665 [Homo
sapiens]
Length = 175
Score = 34.7 bits (78), Expect = 0.016
Identities = 31/88 (35%), Positives = 37/88 (42%), Gaps = 18/88 (20%)
Query: 2 SPKGTTFSTTETRALEPAWGALPPAADFDPGSPVASR-PLSRTRPSRIRSPELAARPAPL 60
+P G T+++ ET F GS A R P +R SP LAARPA
Sbjct: 51 APAGRTWASPET---------------FSSGSRRARRWPCGAPACTRTLSPALAARPAGR 95
Query: 61 --CAGADRRSPGRPPAGPSPGNTHQPER 86
CAG RR R PA QP+R
Sbjct: 96 GPCAGRPRRCGCRDPADSRARGCCQPQR 123
>gi|19924099 synapsin I isoform Ia [Homo sapiens]
Length = 705
Score = 34.3 bits (77), Expect = 0.022
Identities = 19/58 (32%), Positives = 26/58 (44%), Gaps = 1/58 (1%)
Query: 31 PGSPVASRPLSRTRPSRIRSPELAARPAPLCAGADRRSPGRPPAGPS-PGNTHQPERP 87
PG+P A+RP + P R P A R + A ++ G PP G G +P P
Sbjct: 540 PGAPPAARPPASPSPQRQAGPPQATRQTSVSGPAPPKASGAPPGGQQRQGPPQKPPGP 597
Score = 29.6 bits (65), Expect = 0.53
Identities = 22/57 (38%), Positives = 28/57 (49%), Gaps = 12/57 (21%)
Query: 34 PVASRPLSRTRPSRIRSPEL-AARPAPLCAGADRRS------PG-----RPPAGPSP 78
P A PL + PS +P+ A++ AP G R+S PG RPPA PSP
Sbjct: 498 PPAGSPLPQRLPSPTSAPQQPASQAAPPTQGQGRQSRPVAGGPGAPPAARPPASPSP 554
Score = 28.1 bits (61), Expect = 1.5
Identities = 19/47 (40%), Positives = 22/47 (46%), Gaps = 5/47 (10%)
Query: 38 RPLSRTRPSRIRSPELAARPAPLCAGADRRS---PGRPPAGPSPGNT 81
RP P SP A P P A A+R S P PA PSPG++
Sbjct: 27 RPQPPPPPPGAHSP--GATPGPGTATAERSSGVAPAASPAAPSPGSS 71
>gi|19924097 synapsin I isoform Ib [Homo sapiens]
Length = 669
Score = 34.3 bits (77), Expect = 0.022
Identities = 19/58 (32%), Positives = 26/58 (44%), Gaps = 1/58 (1%)
Query: 31 PGSPVASRPLSRTRPSRIRSPELAARPAPLCAGADRRSPGRPPAGPS-PGNTHQPERP 87
PG+P A+RP + P R P A R + A ++ G PP G G +P P
Sbjct: 540 PGAPPAARPPASPSPQRQAGPPQATRQTSVSGPAPPKASGAPPGGQQRQGPPQKPPGP 597
Score = 29.6 bits (65), Expect = 0.53
Identities = 22/57 (38%), Positives = 28/57 (49%), Gaps = 12/57 (21%)
Query: 34 PVASRPLSRTRPSRIRSPEL-AARPAPLCAGADRRS------PG-----RPPAGPSP 78
P A PL + PS +P+ A++ AP G R+S PG RPPA PSP
Sbjct: 498 PPAGSPLPQRLPSPTSAPQQPASQAAPPTQGQGRQSRPVAGGPGAPPAARPPASPSP 554
Score = 28.1 bits (61), Expect = 1.5
Identities = 19/47 (40%), Positives = 22/47 (46%), Gaps = 5/47 (10%)
Query: 38 RPLSRTRPSRIRSPELAARPAPLCAGADRRS---PGRPPAGPSPGNT 81
RP P SP A P P A A+R S P PA PSPG++
Sbjct: 27 RPQPPPPPPGAHSP--GATPGPGTATAERSSGVAPAASPAAPSPGSS 71
>gi|40805852 thrombospondin type I domain-containing 1 isoform 2
[Homo sapiens]
Length = 799
Score = 34.3 bits (77), Expect = 0.022
Identities = 18/47 (38%), Positives = 23/47 (48%)
Query: 34 PVASRPLSRTRPSRIRSPELAARPAPLCAGADRRSPGRPPAGPSPGN 80
P+ P S T +R P+L A L AG +R P R GPSP +
Sbjct: 668 PLNPLPKSYTLGQPLRKPDLGDHQAGLVAGIERTEPHRARRGPSPSH 714
>gi|8923894 thrombospondin type I domain-containing 1 isoform 1
[Homo sapiens]
Length = 852
Score = 34.3 bits (77), Expect = 0.022
Identities = 18/47 (38%), Positives = 23/47 (48%)
Query: 34 PVASRPLSRTRPSRIRSPELAARPAPLCAGADRRSPGRPPAGPSPGN 80
P+ P S T +R P+L A L AG +R P R GPSP +
Sbjct: 721 PLNPLPKSYTLGQPLRKPDLGDHQAGLVAGIERTEPHRARRGPSPSH 767
>gi|169211642 PREDICTED: hypothetical protein [Homo sapiens]
Length = 378
Score = 33.9 bits (76), Expect = 0.028
Identities = 23/67 (34%), Positives = 31/67 (46%), Gaps = 5/67 (7%)
Query: 25 PAADFDPGSPVASRPLSRTRPS-RIRSPELAARPAPLC----AGADRRSPGRPPAGPSPG 79
PA PG+P SRP +R +P+ R R P + AR A + G R + P AGP
Sbjct: 251 PAPAASPGAPGPSRPAARAQPAQRARGPGVGARLAGVTRDGRGGPARDAARSPQAGPGSE 310
Query: 80 NTHQPER 86
+ R
Sbjct: 311 GSRPSSR 317
>gi|169210857 PREDICTED: similar to RIKEN cDNA E130309D14 [Homo
sapiens]
Length = 378
Score = 33.9 bits (76), Expect = 0.028
Identities = 23/67 (34%), Positives = 31/67 (46%), Gaps = 5/67 (7%)
Query: 25 PAADFDPGSPVASRPLSRTRPS-RIRSPELAARPAPLC----AGADRRSPGRPPAGPSPG 79
PA PG+P SRP +R +P+ R R P + AR A + G R + P AGP
Sbjct: 251 PAPAASPGAPGPSRPAARAQPAQRARGPGVGARLAGVTRDGRGGPARDAARSPQAGPGSE 310
Query: 80 NTHQPER 86
+ R
Sbjct: 311 GSRPSSR 317
>gi|33356148 formin-like 1 [Homo sapiens]
Length = 1100
Score = 33.9 bits (76), Expect = 0.028
Identities = 27/73 (36%), Positives = 29/73 (39%), Gaps = 15/73 (20%)
Query: 15 ALEPAWGALPPAADFDPGSPVASRPLSRTRPSRIRSPELAARPAPLCAGADRRSPGRPPA 74
A EPA GA PP PG P SP+ A AP A SP PPA
Sbjct: 533 AAEPAPGAAPPPPPPLPGLP---------------SPQEAPPSAPPQAPPLPGSPEPPPA 577
Query: 75 GPSPGNTHQPERP 87
P PG+ P P
Sbjct: 578 PPLPGDLPPPPPP 590
Score = 26.2 bits (56), Expect = 5.9
Identities = 11/24 (45%), Positives = 13/24 (54%)
Query: 62 AGADRRSPGRPPAGPSPGNTHQPE 85
AGAD G PPA SP +P+
Sbjct: 1016 AGADTPGKGEPPAPKSPPKARRPQ 1039
>gi|156071470 hyperpolarization activated cyclic nucleotide-gated
potassium channel 2 [Homo sapiens]
Length = 889
Score = 33.5 bits (75), Expect = 0.037
Identities = 22/54 (40%), Positives = 24/54 (44%), Gaps = 3/54 (5%)
Query: 34 PVASRPLSRTRPSRIRSPELAARPAPLCAGADRRSPGRPPAGPSPGNTHQPERP 87
P +RPL P + SP L RP P A A SPG PP PG P P
Sbjct: 740 PQVARPL--VGPLALGSPRLVRRPPPGPAPA-AASPGPPPPASPPGAPASPRAP 790
Score = 27.3 bits (59), Expect = 2.6
Identities = 30/95 (31%), Positives = 33/95 (34%), Gaps = 24/95 (25%)
Query: 2 SPKGTTFSTTETRALEPAWGALPPAADFDPGSPV-----ASRPLSR-------------- 42
SP G S R +G LP A P P ASRPLS
Sbjct: 779 SPPGAPASPRAPRT--SPYGGLPAAPLAGPALPARRLSRASRPLSASQPSLPHGAPGPAA 836
Query: 43 -TRPSRIRSPELAARPAPLCA--GADRRSPGRPPA 74
TRP+ +P L PA A DRR P A
Sbjct: 837 STRPASSSTPRLGPTPAARAAAPSPDRRDSASPGA 871
>gi|239754368 PREDICTED: hypothetical protein [Homo sapiens]
Length = 336
Score = 33.5 bits (75), Expect = 0.037
Identities = 25/67 (37%), Positives = 28/67 (41%), Gaps = 12/67 (17%)
Query: 32 GSPVASRPLSRTRPSRIRSPELAARPAPL----CAGADRRSPGRPPAGPSPGNT----HQ 83
G P+A RP + PS P RP L AG R+ PPAGP P T
Sbjct: 61 GLPIAGRPKAGPSPS----PAAPTRPRLLHGRRSAGHVARADVSPPAGPVPAPTPPRARN 116
Query: 84 PERPWEA 90
E PW A
Sbjct: 117 AETPWNA 123
Score = 26.2 bits (56), Expect = 5.9
Identities = 23/81 (28%), Positives = 28/81 (34%), Gaps = 9/81 (11%)
Query: 16 LEPAWGALPPAADFDPGSPVASRPLSRTRPSRIRSPELAARPA----PLCA-----GADR 66
+E A LP + P P +RP R + R P AA P C R
Sbjct: 165 MERASRKLPSRVNSRPPHPAPTRPTPRVQGGFGREPRAAAGQGRGWLPPCRLRLQDSGPR 224
Query: 67 RSPGRPPAGPSPGNTHQPERP 87
R PG P G + RP
Sbjct: 225 RRPGPGPPALRSGRSRGSGRP 245
>gi|239748915 PREDICTED: hypothetical protein XP_002346855 [Homo
sapiens]
Length = 336
Score = 33.5 bits (75), Expect = 0.037
Identities = 25/67 (37%), Positives = 28/67 (41%), Gaps = 12/67 (17%)
Query: 32 GSPVASRPLSRTRPSRIRSPELAARPAPL----CAGADRRSPGRPPAGPSPGNT----HQ 83
G P+A RP + PS P RP L AG R+ PPAGP P T
Sbjct: 61 GLPIAGRPKAGPSPS----PAAPTRPRLLHGRRSAGHVARADVSPPAGPVPAPTPPRARN 116
Query: 84 PERPWEA 90
E PW A
Sbjct: 117 AETPWNA 123
Score = 26.2 bits (56), Expect = 5.9
Identities = 23/81 (28%), Positives = 28/81 (34%), Gaps = 9/81 (11%)
Query: 16 LEPAWGALPPAADFDPGSPVASRPLSRTRPSRIRSPELAARPA----PLCA-----GADR 66
+E A LP + P P +RP R + R P AA P C R
Sbjct: 165 MERASRKLPSRVNSRPPHPAPTRPTPRVQGGFGREPRAAAGQGRGWLPPCRLRLQDSGPR 224
Query: 67 RSPGRPPAGPSPGNTHQPERP 87
R PG P G + RP
Sbjct: 225 RRPGPGPPALRSGRSRGSGRP 245
>gi|239742939 PREDICTED: hypothetical protein XP_002342693 [Homo
sapiens]
Length = 321
Score = 33.5 bits (75), Expect = 0.037
Identities = 25/67 (37%), Positives = 28/67 (41%), Gaps = 12/67 (17%)
Query: 32 GSPVASRPLSRTRPSRIRSPELAARPAPL----CAGADRRSPGRPPAGPSPGNT----HQ 83
G P+A RP + PS P RP L AG R+ PPAGP P T
Sbjct: 61 GLPIAGRPKAGPSPS----PAAPTRPRLLHGRRSAGHVARADVSPPAGPVPAPTPPRARN 116
Query: 84 PERPWEA 90
E PW A
Sbjct: 117 AETPWNA 123
Score = 26.2 bits (56), Expect = 5.9
Identities = 23/81 (28%), Positives = 28/81 (34%), Gaps = 9/81 (11%)
Query: 16 LEPAWGALPPAADFDPGSPVASRPLSRTRPSRIRSPELAARPA----PLCA-----GADR 66
+E A LP + P P +RP R + R P AA P C R
Sbjct: 165 MERASRKLPSRVNSRPPHPAPTRPTPRVQGGFGREPRAAAGQGRGWLPPCRLRLQDSGPR 224
Query: 67 RSPGRPPAGPSPGNTHQPERP 87
R PG P G + RP
Sbjct: 225 RRPGPGPPALRSGRSRGSGRP 245
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.311 0.130 0.419
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,407,359
Number of Sequences: 37866
Number of extensions: 324999
Number of successful extensions: 2817
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 152
Number of HSP's successfully gapped in prelim test: 486
Number of HSP's that attempted gapping in prelim test: 2278
Number of HSP's gapped (non-prelim): 1029
length of query: 90
length of database: 18,247,518
effective HSP length: 62
effective length of query: 28
effective length of database: 15,899,826
effective search space: 445195128
effective search space used: 445195128
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 54 (25.4 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.