Guide to the Human Genome
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Name: LOC100290130 Sequence: fasta or formatted (175aa) NCBI GI: 239748836
Description:

PREDICTED: hypothetical protein XP_002346833

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            14.3         25           2
 C cysteine            6.3         11           2
 D aspartate           2.9          5           1
 E glutamate           1.7          3           1
 F phenylalanine       0.6          1           1
 G glycine             8.0         14           1
 H histidine           0.6          1           1
 I isoleucine          1.1          2           1
 K lysine              0.0          0           0
 L leucine             7.4         13           1
 M methionine          1.1          2           1
 N asparagine          1.1          2           1
 P proline            11.4         20           2
 Q glutamine           4.6          8           1
 R arginine           16.6         29           2
 S serine             12.6         22           2
 T threonine           6.3         11           2
 V valine              1.7          3           1
 W tryptophan          1.1          2           1
 Y tyrosine            0.6          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002346833 
LOC100293941          1.000   PREDICTED: hypothetical protein 
LOC100287611          1.000   PREDICTED: hypothetical protein XP_002342665 
C10orf95              0.056   hypothetical protein LOC79946 
LOC100291634          0.047   PREDICTED: hypothetical protein XP_002346062 
LOC100287232          0.047   PREDICTED: hypothetical protein XP_002342816 
LOC100287232          0.047   PREDICTED: hypothetical protein 
LOC100293985          0.044   PREDICTED: hypothetical protein 
LOC100289986          0.044   PREDICTED: hypothetical protein XP_002346657 
LOC100288009          0.044   PREDICTED: hypothetical protein XP_002342502 
TRIOBP                0.041   TRIO and F-actin binding protein isoform 6 
DNM1                  0.041   dynamin 1 isoform 1 
LOC643355             0.038   PREDICTED: hypothetical protein 
LRCH4                 0.036   leucine-rich repeats and calponin homology (CH) doma...
LOC338758             0.036   PREDICTED: hypothetical protein 
LOC338758             0.036   PREDICTED: hypothetical protein 
LOC338758             0.036   PREDICTED: hypothetical protein 
LOC100133636          0.036   PREDICTED: similar to hCG1806822 
DACT3                 0.033   thymus expressed gene 3-like 
LOC100132891          0.030   PREDICTED: hypothetical protein 
LOC100132891          0.030   PREDICTED: hypothetical protein 
LOC100132891          0.030   PREDICTED: hypothetical protein 
ZNF837                0.030   zinc finger protein 837 isoform 1 
ZNF837                0.030   zinc finger protein 837 isoform 2 
ZFP36L2               0.030   zinc finger protein 36, C3H type-like 2 
SRRM2                 0.030   splicing coactivator subunit SRm300 
LOC100292037          0.030   PREDICTED: hypothetical protein XP_002344729 
LOC100290821          0.030   PREDICTED: hypothetical protein XP_002347416 
LOC100287334          0.030   PREDICTED: hypothetical protein XP_002343201 
LOC100129035          0.027   PREDICTED: hypothetical protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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