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Search of human proteins with 239755842
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239755842 PREDICTED: hypothetical protein [Homo sapiens]
(183 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239755842 PREDICTED: hypothetical protein [Homo sapiens] 371 e-103
gi|239750378 PREDICTED: hypothetical protein XP_002347409 [Homo ... 370 e-103
gi|239744680 PREDICTED: hypothetical protein XP_002343239 [Homo ... 370 e-103
gi|239742114 PREDICTED: similar to hCG2023245 [Homo sapiens] 35 0.028
gi|239747203 PREDICTED: hypothetical protein LOC643965 [Homo sap... 35 0.047
gi|239741003 PREDICTED: hypothetical protein LOC643965 [Homo sap... 35 0.047
gi|239758013 PREDICTED: hypothetical protein [Homo sapiens] 34 0.080
gi|119226260 calcium homeostasis endoplasmic reticulum protein [... 34 0.080
gi|28269687 zygote arrest 1 [Homo sapiens] 33 0.10
gi|119120907 par-3 partitioning defective 3 homolog B isoform a ... 33 0.14
gi|119120897 par-3 partitioning defective 3 homolog B isoform b ... 33 0.14
gi|21361282 splicing factor, arginine/serine-rich 4 [Homo sapiens] 33 0.18
gi|239756174 PREDICTED: hypothetical protein [Homo sapiens] 33 0.18
gi|239750672 PREDICTED: hypothetical protein [Homo sapiens] 33 0.18
gi|239744982 PREDICTED: hypothetical protein [Homo sapiens] 33 0.18
gi|239757046 PREDICTED: similar to hCG1790759 [Homo sapiens] 32 0.23
gi|239755571 PREDICTED: hypothetical protein [Homo sapiens] 32 0.30
gi|239744417 PREDICTED: similar to hCG2023245 [Homo sapiens] 32 0.30
gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens] 32 0.30
gi|169208967 PREDICTED: hypothetical protein [Homo sapiens] 32 0.40
gi|169208709 PREDICTED: hypothetical protein [Homo sapiens] 32 0.40
gi|169208196 PREDICTED: hypothetical protein [Homo sapiens] 32 0.40
gi|239756116 PREDICTED: hypothetical protein [Homo sapiens] 31 0.52
gi|239744954 PREDICTED: hypothetical protein XP_002343343 [Homo ... 31 0.52
gi|115511020 Smg-6 homolog, nonsense mediated mRNA decay factor ... 31 0.52
gi|50962882 G patch domain containing 8 [Homo sapiens] 31 0.52
gi|30102940 otopetrin 3 [Homo sapiens] 31 0.52
gi|224548936 hypothetical protein LOC100170229 [Homo sapiens] 31 0.68
gi|239751929 PREDICTED: hypothetical protein [Homo sapiens] 31 0.68
gi|239746415 PREDICTED: hypothetical protein XP_002344217 [Homo ... 31 0.68
>gi|239755842 PREDICTED: hypothetical protein [Homo sapiens]
Length = 183
Score = 371 bits (952), Expect = e-103
Identities = 183/183 (100%), Positives = 183/183 (100%)
Query: 1 MQMIRLSITILVIIFIYLLHILSLRSVMENKDMSSCGKEYLAFRRESHLRCEQDTCSEAN 60
MQMIRLSITILVIIFIYLLHILSLRSVMENKDMSSCGKEYLAFRRESHLRCEQDTCSEAN
Sbjct: 1 MQMIRLSITILVIIFIYLLHILSLRSVMENKDMSSCGKEYLAFRRESHLRCEQDTCSEAN 60
Query: 61 INPNIFHRPNKHKNHKNSNSFRKLLLAESSSSYGRGQRLTAKAERNPADGEGRSPAAGRF 120
INPNIFHRPNKHKNHKNSNSFRKLLLAESSSSYGRGQRLTAKAERNPADGEGRSPAAGRF
Sbjct: 61 INPNIFHRPNKHKNHKNSNSFRKLLLAESSSSYGRGQRLTAKAERNPADGEGRSPAAGRF 120
Query: 121 SASRRSPRGKEKAEAANPRSRRWRVPPTSRRNLLTRGPGRPAAAKGQLGHPNLGKSGKHA 180
SASRRSPRGKEKAEAANPRSRRWRVPPTSRRNLLTRGPGRPAAAKGQLGHPNLGKSGKHA
Sbjct: 121 SASRRSPRGKEKAEAANPRSRRWRVPPTSRRNLLTRGPGRPAAAKGQLGHPNLGKSGKHA 180
Query: 181 RRG 183
RRG
Sbjct: 181 RRG 183
>gi|239750378 PREDICTED: hypothetical protein XP_002347409 [Homo
sapiens]
Length = 183
Score = 370 bits (949), Expect = e-103
Identities = 182/183 (99%), Positives = 183/183 (100%)
Query: 1 MQMIRLSITILVIIFIYLLHILSLRSVMENKDMSSCGKEYLAFRRESHLRCEQDTCSEAN 60
MQMIRLSITILVIIFIYLLHILSLRSVMENKDMSSCGKEYLAFRRESHLRCEQDTCSEAN
Sbjct: 1 MQMIRLSITILVIIFIYLLHILSLRSVMENKDMSSCGKEYLAFRRESHLRCEQDTCSEAN 60
Query: 61 INPNIFHRPNKHKNHKNSNSFRKLLLAESSSSYGRGQRLTAKAERNPADGEGRSPAAGRF 120
INPNIFHRPNKHKNHKNSNSFRKLLLAESS+SYGRGQRLTAKAERNPADGEGRSPAAGRF
Sbjct: 61 INPNIFHRPNKHKNHKNSNSFRKLLLAESSNSYGRGQRLTAKAERNPADGEGRSPAAGRF 120
Query: 121 SASRRSPRGKEKAEAANPRSRRWRVPPTSRRNLLTRGPGRPAAAKGQLGHPNLGKSGKHA 180
SASRRSPRGKEKAEAANPRSRRWRVPPTSRRNLLTRGPGRPAAAKGQLGHPNLGKSGKHA
Sbjct: 121 SASRRSPRGKEKAEAANPRSRRWRVPPTSRRNLLTRGPGRPAAAKGQLGHPNLGKSGKHA 180
Query: 181 RRG 183
RRG
Sbjct: 181 RRG 183
>gi|239744680 PREDICTED: hypothetical protein XP_002343239 [Homo
sapiens]
Length = 183
Score = 370 bits (949), Expect = e-103
Identities = 182/183 (99%), Positives = 183/183 (100%)
Query: 1 MQMIRLSITILVIIFIYLLHILSLRSVMENKDMSSCGKEYLAFRRESHLRCEQDTCSEAN 60
MQMIRLSITILVIIFIYLLHILSLRSVMENKDMSSCGKEYLAFRRESHLRCEQDTCSEAN
Sbjct: 1 MQMIRLSITILVIIFIYLLHILSLRSVMENKDMSSCGKEYLAFRRESHLRCEQDTCSEAN 60
Query: 61 INPNIFHRPNKHKNHKNSNSFRKLLLAESSSSYGRGQRLTAKAERNPADGEGRSPAAGRF 120
INPNIFHRPNKHKNHKNSNSFRKLLLAESS+SYGRGQRLTAKAERNPADGEGRSPAAGRF
Sbjct: 61 INPNIFHRPNKHKNHKNSNSFRKLLLAESSNSYGRGQRLTAKAERNPADGEGRSPAAGRF 120
Query: 121 SASRRSPRGKEKAEAANPRSRRWRVPPTSRRNLLTRGPGRPAAAKGQLGHPNLGKSGKHA 180
SASRRSPRGKEKAEAANPRSRRWRVPPTSRRNLLTRGPGRPAAAKGQLGHPNLGKSGKHA
Sbjct: 121 SASRRSPRGKEKAEAANPRSRRWRVPPTSRRNLLTRGPGRPAAAKGQLGHPNLGKSGKHA 180
Query: 181 RRG 183
RRG
Sbjct: 181 RRG 183
>gi|239742114 PREDICTED: similar to hCG2023245 [Homo sapiens]
Length = 329
Score = 35.4 bits (80), Expect = 0.028
Identities = 28/94 (29%), Positives = 37/94 (39%), Gaps = 8/94 (8%)
Query: 98 RLTAKAERNPADGEGRSPAAGRFSASRRSP------RGKEKAEAANPRSRRWRVPPTSR- 150
R + A+R A G SP AGR + SP GK + PR VPP +
Sbjct: 133 RRPSSADRPLAPGPSSSPGAGRAPRAMASPSGSSEATGKPRGRDGGPRREEDDVPPEEKR 192
Query: 151 -RNLLTRGPGRPAAAKGQLGHPNLGKSGKHARRG 183
R LL RG +P + P G+ + G
Sbjct: 193 LRLLLERGSAQPEDCEDGEDAPRPGRKKTGTQTG 226
>gi|239747203 PREDICTED: hypothetical protein LOC643965 [Homo
sapiens]
Length = 451
Score = 34.7 bits (78), Expect = 0.047
Identities = 28/80 (35%), Positives = 38/80 (47%), Gaps = 9/80 (11%)
Query: 105 RNPADGEGRSPAAGRFSASRRSPRGKEK-AEAANPRSRRWRVPPTSRRNLLTRGPGRPAA 163
R PA R G + S + RG+++ A+ + P RR P SRR RGP A
Sbjct: 169 RRPAARVLRLRCRGSRARSLQQARGQQRVAQGSGPVQRREARPGASRR----RGP----A 220
Query: 164 AKGQLGHPNLGKSGKHARRG 183
+ QLGHP + G +RG
Sbjct: 221 LQQQLGHPRVSVPGGLVQRG 240
>gi|239741003 PREDICTED: hypothetical protein LOC643965 [Homo
sapiens]
Length = 487
Score = 34.7 bits (78), Expect = 0.047
Identities = 28/80 (35%), Positives = 38/80 (47%), Gaps = 9/80 (11%)
Query: 105 RNPADGEGRSPAAGRFSASRRSPRGKEK-AEAANPRSRRWRVPPTSRRNLLTRGPGRPAA 163
R PA R G + S + RG+++ A+ + P RR P SRR RGP A
Sbjct: 169 RRPAARVLRLRCRGSRARSLQQARGQQRVAQGSGPVQRREARPGASRR----RGP----A 220
Query: 164 AKGQLGHPNLGKSGKHARRG 183
+ QLGHP + G +RG
Sbjct: 221 LQQQLGHPRVSVPGGLVQRG 240
>gi|239758013 PREDICTED: hypothetical protein [Homo sapiens]
Length = 819
Score = 33.9 bits (76), Expect = 0.080
Identities = 28/91 (30%), Positives = 37/91 (40%), Gaps = 8/91 (8%)
Query: 95 RGQRLTAKAERNPADGEGRSPAAGRFSASRRSPRGKEKAEAANPRSRRWRVPPTSRRNLL 154
R Q+ A +N G G AA + +KA AA +SR + P RR
Sbjct: 141 RAQKSAAAGSKNR--GAGAQKAAAAAGVKSQGGEKPQKAAAAGAKSRSGKKP--RRRGAK 196
Query: 155 TRG----PGRPAAAKGQLGHPNLGKSGKHAR 181
+RG GR AK + G G+ KH R
Sbjct: 197 SRGDEDKKGRQREAKSRFGKTRGGRRKKHRR 227
Score = 30.8 bits (68), Expect = 0.68
Identities = 21/67 (31%), Positives = 28/67 (41%), Gaps = 3/67 (4%)
Query: 101 AKAERNPADGEGRSPAAGRFSAS---RRSPRGKEKAEAANPRSRRWRVPPTSRRNLLTRG 157
A N GE ++ AAG S R+ R +KA A + RWR ++ RG
Sbjct: 95 AGGAENRGGGEQKAAAAGTKSLGGRGRKPRRRGQKAAATGSKKPRWRAQKSAAAGSKNRG 154
Query: 158 PGRPAAA 164
G AA
Sbjct: 155 AGAQKAA 161
Score = 28.5 bits (62), Expect = 3.4
Identities = 24/88 (27%), Positives = 34/88 (38%), Gaps = 12/88 (13%)
Query: 95 RGQRLTAKAERNPADGEGRSPAAGRFSASRRSPRGKEKAEAANPRSRRWRVPPTSRRNLL 154
RGQ+ KA A+ G +G++KA AA +SR + S +NL
Sbjct: 453 RGQKARQKAAEAGAESRGDKK------------QGRQKASAAGTKSRGGGLKSHSGKNLW 500
Query: 155 TRGPGRPAAAKGQLGHPNLGKSGKHARR 182
RG AA + + K RR
Sbjct: 501 RRGQKAEAAGEKATAAGAKSRGRKQPRR 528
Score = 27.7 bits (60), Expect = 5.7
Identities = 31/139 (22%), Positives = 47/139 (33%), Gaps = 24/139 (17%)
Query: 68 RPNKHKNHKNSNSFRKLLLAESSSSYG--RGQRLTAKAERNPADGEGRSPAAGRFSASRR 125
+P + + +K E+ S +G RG R PA G +S G ++
Sbjct: 189 KPRRRGAKSRGDEDKKGRQREAKSRFGKTRGGRRKKHRRPKPAAGGAKSRRGGGKKPQKQ 248
Query: 126 SPRGKEKAEAANPRSRRWR---------------VPPTSRRNLLTRGPGRPAAAKGQLG- 169
RG++ A R + R + RR T G A +G G
Sbjct: 249 RRRGQKAATGGKSRVGKSRGGGDKKLRRQGQNAALAGAKRRGAATAGEKPAAKGRGGRGP 308
Query: 170 ------HPNLGKSGKHARR 182
+P G+ GK RR
Sbjct: 309 KSLGGQNPRWGRGGKKPRR 327
>gi|119226260 calcium homeostasis endoplasmic reticulum protein
[Homo sapiens]
Length = 916
Score = 33.9 bits (76), Expect = 0.080
Identities = 30/118 (25%), Positives = 48/118 (40%), Gaps = 1/118 (0%)
Query: 66 FHRPNKHKNHKNSNSFRKLLLAESSSSYGRGQRLTAKAERNPADGEGRSPAAGRFSASRR 125
F+ P H +NS + + L E + R +R + +RN RS + R +S R
Sbjct: 693 FYSPPSHDRPRNSEGWEQNGLYEFFRAKMRARRRKGQEKRNSGPSRSRSRSKSRGRSSSR 752
Query: 126 SPRGKEKAEAANPRSR-RWRVPPTSRRNLLTRGPGRPAAAKGQLGHPNLGKSGKHARR 182
S K+ + RSR R SR +R R + ++ + + KS RR
Sbjct: 753 SNSRSSKSSGSYSRSRSRSCSRSYSRSRSRSRSRSRSSRSRSRSQSRSRSKSYSPGRR 810
Score = 31.2 bits (69), Expect = 0.52
Identities = 31/115 (26%), Positives = 52/115 (45%), Gaps = 9/115 (7%)
Query: 70 NKHKNHKNSNSFRKLLLAESSSSYGRGQRLTAKAERNPADGEGRSPAAGRFSASRRSPRG 129
++ K+ S+S ++SS SY R + + R+ + RS + R S SR +
Sbjct: 741 SRSKSRGRSSSRSNSRSSKSSGSYSRSR--SRSCSRSYSRSRSRSRSRSRSSRSRSRSQS 798
Query: 130 KEKAEAANP-RSRRWR----VPPTSRRNLLTRGPGRPAAAKGQ--LGHPNLGKSG 177
+ ++++ +P R RR R PP+S P P + G+ GH L K G
Sbjct: 799 RSRSKSYSPGRRRRSRSRSPTPPSSAGLGSNSAPPIPDSRLGEENKGHQMLVKMG 853
>gi|28269687 zygote arrest 1 [Homo sapiens]
Length = 424
Score = 33.5 bits (75), Expect = 0.10
Identities = 30/94 (31%), Positives = 41/94 (43%), Gaps = 7/94 (7%)
Query: 96 GQRLTAKAERNP-ADGEGRSPAAGRFSASRRS------PRGKEKAEAANPRSRRWRVPPT 148
G+ T KA R P +D +G + AA R S + + PR ++ EAA + R P
Sbjct: 226 GEVWTKKAPRRPQSDDDGEAQAAVRASWEQPADGPELPPREAQEGEAAPRSALRSPGQPP 285
Query: 149 SRRNLLTRGPGRPAAAKGQLGHPNLGKSGKHARR 182
S G GR AA G+ P + GK R
Sbjct: 286 SAGRARDGGDGREAAVAGEGPSPRSPELGKERLR 319
>gi|119120907 par-3 partitioning defective 3 homolog B isoform a
[Homo sapiens]
Length = 1104
Score = 33.1 bits (74), Expect = 0.14
Identities = 35/159 (22%), Positives = 58/159 (36%), Gaps = 20/159 (12%)
Query: 41 LAFRRESHLRCEQDTCSEANINPNIFHRPNKH--KNHKNSNSFRKLL------------- 85
L ++ S L Q +E N FHRP H + + SFR +
Sbjct: 739 LGLKKSSSLESLQTAVAEVRKNDLPFHRPRPHMVRGRGCNESFRAAIDKSYDGPEEIEAD 798
Query: 86 -LAESSSSYGRGQRLTAKAERNPADGEGRSPAAGRFSASRRSPRGKEKAEAANPRSRRWR 144
L++ SS G+G A + ++ E A + ++ + KEK + +R
Sbjct: 799 GLSDKSSHSGQGALNCESAPQGNSELEDMENKARKVKKTKEKEKKKEKGKLKVKEKKRKE 858
Query: 145 VPPTSRRNLLTRGPGRPAAAKGQLGHPNLGKSGKHARRG 183
R + +G G A + G K GK ++G
Sbjct: 859 ENEDPERKIKKKGFG----AMLRFGKKKEDKGGKAEQKG 893
>gi|119120897 par-3 partitioning defective 3 homolog B isoform b
[Homo sapiens]
Length = 1143
Score = 33.1 bits (74), Expect = 0.14
Identities = 35/159 (22%), Positives = 58/159 (36%), Gaps = 20/159 (12%)
Query: 41 LAFRRESHLRCEQDTCSEANINPNIFHRPNKH--KNHKNSNSFRKLL------------- 85
L ++ S L Q +E N FHRP H + + SFR +
Sbjct: 677 LGLKKSSSLESLQTAVAEVRKNDLPFHRPRPHMVRGRGCNESFRAAIDKSYDGPEEIEAD 736
Query: 86 -LAESSSSYGRGQRLTAKAERNPADGEGRSPAAGRFSASRRSPRGKEKAEAANPRSRRWR 144
L++ SS G+G A + ++ E A + ++ + KEK + +R
Sbjct: 737 GLSDKSSHSGQGALNCESAPQGNSELEDMENKARKVKKTKEKEKKKEKGKLKVKEKKRKE 796
Query: 145 VPPTSRRNLLTRGPGRPAAAKGQLGHPNLGKSGKHARRG 183
R + +G G A + G K GK ++G
Sbjct: 797 ENEDPERKIKKKGFG----AMLRFGKKKEDKGGKAEQKG 831
>gi|21361282 splicing factor, arginine/serine-rich 4 [Homo sapiens]
Length = 494
Score = 32.7 bits (73), Expect = 0.18
Identities = 34/145 (23%), Positives = 54/145 (37%), Gaps = 19/145 (13%)
Query: 44 RRESHLRCEQDTCSEANINPNIFHRPNKHKNHKNSNSFRKLLLAESSSSYGRG------- 96
R ES R + SE + R K + S +K ++ S R
Sbjct: 361 REESRSRSRSRSKSERS-------RKRGSKRDSKAGSSKKKKKEDTDRSQSRSPSRSVSK 413
Query: 97 QRLTAKAERNPADGEGRSPAAGRFSASRRSPRGKEKAEAANPRSRRWRVPPTSRRNLLTR 156
+R AK+E + +G G S AG +R R K++ P R R S+ ++
Sbjct: 414 EREHAKSESSQREGRGESENAGTNQETRSRSRSNSKSKPNLPSESRSRSKSASKTRSRSK 473
Query: 157 GPGRPAAAKGQLGHPNLGKSGKHAR 181
R A+ P+ +S H+R
Sbjct: 474 SRSRSASRS-----PSRSRSRSHSR 493
>gi|239756174 PREDICTED: hypothetical protein [Homo sapiens]
Length = 625
Score = 32.7 bits (73), Expect = 0.18
Identities = 27/82 (32%), Positives = 40/82 (48%), Gaps = 10/82 (12%)
Query: 84 LLLAESSSSYGRG--QRLTAKAERNPADGE-------GRSPAAGRFSASRRSPRGKEKAE 134
LLL + ++++G+ QR+ AK R + E GR A + RR RG+E+ E
Sbjct: 369 LLLEQRAAAHGQWELQRVHAKQRREREEREKQRALEQGRRAWAAQVE-ERRGRRGREERE 427
Query: 135 AANPRSRRWRVPPTSRRNLLTR 156
AA R R++ RR L R
Sbjct: 428 AARRRQRQYERSEERRRELAER 449
>gi|239750672 PREDICTED: hypothetical protein [Homo sapiens]
Length = 627
Score = 32.7 bits (73), Expect = 0.18
Identities = 27/82 (32%), Positives = 40/82 (48%), Gaps = 10/82 (12%)
Query: 84 LLLAESSSSYGRG--QRLTAKAERNPADGE-------GRSPAAGRFSASRRSPRGKEKAE 134
LLL + ++++G+ QR+ AK R + E GR A + RR RG+E+ E
Sbjct: 371 LLLEQRAAAHGQWELQRVHAKQRREREEREKQRALEQGRRAWAAQVE-ERRGRRGREERE 429
Query: 135 AANPRSRRWRVPPTSRRNLLTR 156
AA R R++ RR L R
Sbjct: 430 AARRRQRQYERSEERRRELAER 451
>gi|239744982 PREDICTED: hypothetical protein [Homo sapiens]
Length = 627
Score = 32.7 bits (73), Expect = 0.18
Identities = 27/82 (32%), Positives = 40/82 (48%), Gaps = 10/82 (12%)
Query: 84 LLLAESSSSYGRG--QRLTAKAERNPADGE-------GRSPAAGRFSASRRSPRGKEKAE 134
LLL + ++++G+ QR+ AK R + E GR A + RR RG+E+ E
Sbjct: 371 LLLEQRAAAHGQWELQRVHAKQRREREEREKQRALEQGRRAWAAQVE-ERRGRRGREERE 429
Query: 135 AANPRSRRWRVPPTSRRNLLTR 156
AA R R++ RR L R
Sbjct: 430 AARRRQRQYERSEERRRELAER 451
>gi|239757046 PREDICTED: similar to hCG1790759 [Homo sapiens]
Length = 737
Score = 32.3 bits (72), Expect = 0.23
Identities = 24/71 (33%), Positives = 31/71 (43%), Gaps = 2/71 (2%)
Query: 80 SFRKLLLAESSSSYGRGQRLTAKAERNPADGEGRSPAAGRFSA--SRRSPRGKEKAEAAN 137
S R++L SSS+ Q TA+ + A E R P RFS + + R A A
Sbjct: 111 SHREVLDPSLSSSFSNFQEKTARRFKGTAPAEARGPGGRRFSGLLTPSAARPDPPAPPAQ 170
Query: 138 PRSRRWRVPPT 148
RR V PT
Sbjct: 171 AWDRRGSVTPT 181
>gi|239755571 PREDICTED: hypothetical protein [Homo sapiens]
Length = 261
Score = 32.0 bits (71), Expect = 0.30
Identities = 26/73 (35%), Positives = 31/73 (42%), Gaps = 10/73 (13%)
Query: 98 RLTAKAERNPADGEGRSPAAGRFSASRRSPRGKEKAEAANPRSRRWR-------VPPTSR 150
R + A+R A G SP AGR + SP G KA PR R R V P +
Sbjct: 101 RRPSSADRPLAPGPSSSPGAGRAPGAMASPSGSSKA-TGKPRGRDGRPRREEDDVTPEEK 159
Query: 151 --RNLLTRGPGRP 161
R LL G +P
Sbjct: 160 RLRLLLEEGSAQP 172
>gi|239744417 PREDICTED: similar to hCG2023245 [Homo sapiens]
Length = 364
Score = 32.0 bits (71), Expect = 0.30
Identities = 26/73 (35%), Positives = 31/73 (42%), Gaps = 10/73 (13%)
Query: 98 RLTAKAERNPADGEGRSPAAGRFSASRRSPRGKEKAEAANPRSRRWR-------VPPTSR 150
R + A+R A G SP AGR + SP G KA PR R R V P +
Sbjct: 204 RRPSSADRPLAPGPSSSPGAGRAPGAMASPSGSSKA-TGKPRGRDGRPRREEDDVTPEEK 262
Query: 151 --RNLLTRGPGRP 161
R LL G +P
Sbjct: 263 RLRLLLEEGSAQP 275
>gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens]
Length = 2752
Score = 32.0 bits (71), Expect = 0.30
Identities = 28/113 (24%), Positives = 44/113 (38%), Gaps = 8/113 (7%)
Query: 73 KNHKNSNSFRKLLLAESSSSYGRGQRLTAKAERNPADGEGRSPAAGRFSASRRSPRGKEK 132
++H S + R + + + GR + R PA RS R + R+P + +
Sbjct: 561 RSHSRSPATRGRSRSRTPARRGRSR------SRTPARRRSRSRTPTRRRSRSRTPARRGR 614
Query: 133 AEAANPRSRRWRVPPTSRRNLLTRGPGRPAAAKGQLGHPNLGKSGKH--ARRG 183
+ + P RR R RR +R P R + G+S ARRG
Sbjct: 615 SRSRTPARRRSRTRSPVRRRSRSRSPARRSGRSRSRTPARRGRSRSRTPARRG 667
Score = 30.0 bits (66), Expect = 1.2
Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 3/48 (6%)
Query: 114 SPAAGRFSASRRSPRGKEKAEAANPRSR---RWRVPPTSRRNLLTRGP 158
SP + R S SR P + ++ + P +R R R PP +RR +R P
Sbjct: 1916 SPVSRRRSRSRTPPVTRRRSRSRTPTTRRRSRSRTPPVTRRRSRSRTP 1963
Score = 29.6 bits (65), Expect = 1.5
Identities = 19/48 (39%), Positives = 24/48 (50%), Gaps = 3/48 (6%)
Query: 114 SPAAGRFSASRRSPRGKEKAEAANPRSRRW---RVPPTSRRNLLTRGP 158
SP + R S SR S + A+P SRR R PP +RR +R P
Sbjct: 1893 SPVSRRRSRSRTSVTRRRSRSRASPVSRRRSRSRTPPVTRRRSRSRTP 1940
Score = 28.5 bits (62), Expect = 3.4
Identities = 15/51 (29%), Positives = 19/51 (37%)
Query: 96 GQRLTAKAERNPADGEGRSPAAGRFSASRRSPRGKEKAEAANPRSRRWRVP 146
G R A G G P A + +S R+P+ A PRS P
Sbjct: 2299 GARTPAALAALSLTGSGTPPTAANYPSSSRTPQAPASANLVGPRSAHATAP 2349
Score = 28.1 bits (61), Expect = 4.4
Identities = 27/119 (22%), Positives = 45/119 (37%), Gaps = 3/119 (2%)
Query: 44 RRESHLRCEQDTCSEANINPNIFHRPNKHKNHKNSNSFRKLLLAESSSSYGRGQRLTAKA 103
RR S T S +P+ +P + ++ + K G Q + +
Sbjct: 1744 RRRSASSPRTKTTSRRGRSPS--PKPRGLQRSRSRSRREKTRTTRRRDRSGSSQSTSRRR 1801
Query: 104 ERNPADGEGRSPAAGRFSASRRSPRGKEKAEAANPRSR-RWRVPPTSRRNLLTRGPGRP 161
+R+ + G RSP +E + ++ R R R R PPTSR+ +R P
Sbjct: 1802 QRSRSRSRVTRRRRGGSGYHSRSPARQESSRTSSRRRRGRSRTPPTSRKRSRSRTSPAP 1860
Score = 27.7 bits (60), Expect = 5.7
Identities = 25/102 (24%), Positives = 43/102 (42%), Gaps = 7/102 (6%)
Query: 88 ESSSSYGRGQRLTAKAERNPADGEGRSPAAGRFSASRRSPRGKEKAEA------ANPRSR 141
E SSS R +A+R+ + S GR + + RG+ ++ + RS
Sbjct: 452 EISSSPTSKNRSHGRAKRDKSHSHTPSRRMGRSRSPATAKRGRSRSRTPTKRGHSRSRSP 511
Query: 142 RWRVPPTSRRNLLTRGPGRPAAAKGQLGHPNLGKSGKHARRG 183
+WR +++R +R P R ++ P +S RRG
Sbjct: 512 QWRRSRSAQRWGRSRSPQRRGRSRSP-QRPGWSRSRNTQRRG 552
Score = 27.7 bits (60), Expect = 5.7
Identities = 20/85 (23%), Positives = 32/85 (37%), Gaps = 8/85 (9%)
Query: 98 RLTAKAERNPADGEGRSPAAGRFSASRRSPRGKEKAEAANPRSRRWRVPPTSRRNLLTRG 157
R + R+ + +GR P+ S++ SP K+ A SR P T R
Sbjct: 1630 RALPRRSRSGSSSKGRGPSPEGSSSTESSPEHPPKSRTARRGSRSSPEPKTKSRT----- 1684
Query: 158 PGRPAAAKGQLGHPNLGKSGKHARR 182
P + P L + + +RR
Sbjct: 1685 ---PPRRRSSRSSPELTRKARLSRR 1706
Score = 27.7 bits (60), Expect = 5.7
Identities = 29/98 (29%), Positives = 39/98 (39%), Gaps = 10/98 (10%)
Query: 57 SEANINPNIFHRPNKHKN----HKNSNSFRKLL--LAESSS-SYGRGQRLTAKAERNPAD 109
S A P +P K + S S RK + L +S S SY +R + +P D
Sbjct: 2650 SPAKPGPQALPKPASPKKPPPGERRSRSPRKPIDSLRDSRSLSYSPVERRRPSPQPSPRD 2709
Query: 110 GEGRSPAAGRFSASR---RSPRGKEKAEAANPRSRRWR 144
+ S G R RSP K + E +PR R R
Sbjct: 2710 QQSSSSERGSRRGQRGDSRSPSHKRRRETPSPRPMRHR 2747
Score = 26.9 bits (58), Expect = 9.8
Identities = 20/52 (38%), Positives = 24/52 (46%), Gaps = 5/52 (9%)
Query: 110 GEGRSPAAGRF-SASRRSP----RGKEKAEAANPRSRRWRVPPTSRRNLLTR 156
G R+P R S SR SP R + +A A R R R P SRR +R
Sbjct: 1840 GRSRTPPTSRKRSRSRTSPAPWKRSRSRASPATHRRSRSRTPLISRRRSRSR 1891
>gi|169208967 PREDICTED: hypothetical protein [Homo sapiens]
Length = 200
Score = 31.6 bits (70), Expect = 0.40
Identities = 23/64 (35%), Positives = 29/64 (45%), Gaps = 4/64 (6%)
Query: 85 LLAESSSSYGRGQRLTAKAERNPADGEGRSPAAGRFSA---SRRSPRGKEKAEAANPR-S 140
L A S + G R A PA GRS A +A + RSP G + ++ R S
Sbjct: 124 LTARSQKAGPSGARSPRSAVETPAQSPGRSGTASAAAADPDTVRSPGGSDNIPTSSGRGS 183
Query: 141 RRWR 144
RRWR
Sbjct: 184 RRWR 187
>gi|169208709 PREDICTED: hypothetical protein [Homo sapiens]
Length = 150
Score = 31.6 bits (70), Expect = 0.40
Identities = 23/64 (35%), Positives = 29/64 (45%), Gaps = 4/64 (6%)
Query: 85 LLAESSSSYGRGQRLTAKAERNPADGEGRSPAAGRFSA---SRRSPRGKEKAEAANPR-S 140
L A S + G R A PA GRS A +A + RSP G + ++ R S
Sbjct: 74 LTARSQKAGPSGARSPRSAVETPAQSPGRSGTASAAAADPDTVRSPGGSDNIPTSSGRGS 133
Query: 141 RRWR 144
RRWR
Sbjct: 134 RRWR 137
>gi|169208196 PREDICTED: hypothetical protein [Homo sapiens]
Length = 150
Score = 31.6 bits (70), Expect = 0.40
Identities = 23/64 (35%), Positives = 29/64 (45%), Gaps = 4/64 (6%)
Query: 85 LLAESSSSYGRGQRLTAKAERNPADGEGRSPAAGRFSA---SRRSPRGKEKAEAANPR-S 140
L A S + G R A PA GRS A +A + RSP G + ++ R S
Sbjct: 74 LTARSQKAGPSGARSPRSAVETPAQSPGRSGTASAAAADPDTVRSPGGSDNIPTSSGRGS 133
Query: 141 RRWR 144
RRWR
Sbjct: 134 RRWR 137
>gi|239756116 PREDICTED: hypothetical protein [Homo sapiens]
Length = 194
Score = 31.2 bits (69), Expect = 0.52
Identities = 26/80 (32%), Positives = 33/80 (41%), Gaps = 4/80 (5%)
Query: 88 ESSSSYGRGQRLTAKAERNPADGEGRSPAAGRFSASRRSPRGKEKAEAANPRSRRWRVPP 147
+ SS+ G +P G SPAA A+ SPR AA W PP
Sbjct: 56 DGSSTLPGGDPACLLKSCSPGLGTRSSPAAAGGGATSGSPRVVTPEPAAPATQVSW--PP 113
Query: 148 TSRRNLLTRGPGRPAAAKGQ 167
+S R L GP P+ A+ Q
Sbjct: 114 SSAR--LLAGPASPSRAEAQ 131
>gi|239744954 PREDICTED: hypothetical protein XP_002343343 [Homo
sapiens]
Length = 194
Score = 31.2 bits (69), Expect = 0.52
Identities = 26/80 (32%), Positives = 33/80 (41%), Gaps = 4/80 (5%)
Query: 88 ESSSSYGRGQRLTAKAERNPADGEGRSPAAGRFSASRRSPRGKEKAEAANPRSRRWRVPP 147
+ SS+ G +P G SPAA A+ SPR AA W PP
Sbjct: 56 DGSSTLPGGDPACLLKSCSPGLGTRSSPAAAGGGATSGSPRVVTPEPAAPATQVSW--PP 113
Query: 148 TSRRNLLTRGPGRPAAAKGQ 167
+S R L GP P+ A+ Q
Sbjct: 114 SSAR--LLAGPASPSRAEAQ 131
>gi|115511020 Smg-6 homolog, nonsense mediated mRNA decay factor
[Homo sapiens]
Length = 1419
Score = 31.2 bits (69), Expect = 0.52
Identities = 26/120 (21%), Positives = 46/120 (38%), Gaps = 15/120 (12%)
Query: 30 NKDMSSCGKEYLAFRRESHLRCEQDTCSEANINPNIFHRPNKHKNHKNSNSFRKLLLAES 89
+K+ +S +E + LR E+D C + ++P++ AE
Sbjct: 156 SKESASRVEEEEVLNQVEQLRVEEDECRGNVAKEEVANKPDR---------------AEI 200
Query: 90 SSSYGRGQRLTAKAERNPADGEGRSPAAGRFSASRRSPRGKEKAEAANPRSRRWRVPPTS 149
S G G+ AK E+ G+G +R P ++ ++ R R+R TS
Sbjct: 201 EKSPGGGRVGAAKGEKGKRMGKGEGVRETHDDPARGRPGSAKRYSRSDKRRNRYRTRSTS 260
>gi|50962882 G patch domain containing 8 [Homo sapiens]
Length = 1502
Score = 31.2 bits (69), Expect = 0.52
Identities = 31/120 (25%), Positives = 48/120 (40%), Gaps = 18/120 (15%)
Query: 67 HRPNKHKNHKNSNSFRKLLLA---ESSSSYGRGQRLTAKAERNPADGEGRSPAAGRFSAS 123
HR K K HK S+ ++ A E SS G++ + +R + +PA S
Sbjct: 673 HRHKKKKKHKKSSKHKRKHKADTEEKSSKAESGEKSKKRKKRKRKKNKSSAPA-----DS 727
Query: 124 RRSPRGKE--KAEAANPRSRRWRVPPTSRRNLLTRGPGRPAAAKGQLGHPNLGKSGKHAR 181
R P+ + A PR RR + RR+L A +G G + G G ++
Sbjct: 728 ERGPKPEPPGSGSPAPPRRRRRAQDDSQRRSL--------PAEEGSSGKKDEGGGGSSSQ 779
Score = 27.7 bits (60), Expect = 5.7
Identities = 27/105 (25%), Positives = 43/105 (40%), Gaps = 14/105 (13%)
Query: 67 HRPNKHKNHKNSNSFRKLLLAESSSSYGRGQRLTAKAERNPADGEGRSPAAGRFSASRRS 126
HR +HK + + + S S R + + ER+ + G RS + R + RRS
Sbjct: 921 HRSKRHKYSSSDDDY------SLSCSQSRSRSRSHTRERSRSRGRSRSSSCSRSRSKRRS 974
Query: 127 PRGKEKAEAANPRSRRWRVPPTSRRNLLTRGPG-RPAAAKGQLGH 170
+ + RSR + + R+ TR P R + K GH
Sbjct: 975 ---RSTTAHSWQRSRSY----SRDRSRSTRSPSQRSGSRKRSWGH 1012
>gi|30102940 otopetrin 3 [Homo sapiens]
Length = 596
Score = 31.2 bits (69), Expect = 0.52
Identities = 26/86 (30%), Positives = 34/86 (39%), Gaps = 8/86 (9%)
Query: 87 AESSSSYGRGQRLTAKAERN----PADGEGRSPAAGRFSASRRSPRGKEKAEAANPRSRR 142
A + S +GR R + R PA GE + A +R +E+A A PR +
Sbjct: 8 AAAQSRWGRASRASVSPGRTIRSAPAVGEAQETEAAPEKENRVDVGAEERAAATRPRQKS 67
Query: 143 WRVPPTSRRNLLTRGPGRPAAAKGQL 168
W V R L R A GQL
Sbjct: 68 WLV----RHFSLLLRRDRQAQKAGQL 89
>gi|224548936 hypothetical protein LOC100170229 [Homo sapiens]
Length = 715
Score = 30.8 bits (68), Expect = 0.68
Identities = 40/174 (22%), Positives = 66/174 (37%), Gaps = 23/174 (13%)
Query: 26 SVMENKDMSSCGKEYLAFRRESHLRCEQDTCSEANINPNIFHRPNKHKNHKNSNSFRKLL 85
S ++ + S G+ + R +S+ E + ++ + RP ++H S S R+
Sbjct: 235 SPSSSRKVKSYGQMIIPSREKSYSPTEMSSRVKSYNQASTRSRP---QSHSQSRSPRRSR 291
Query: 86 LAESSSSYGRGQRLTAKAERNPADGEGRS---PAAGRFSASRRSPRGKEKAEAANP---R 139
++ R + + K + A R GR S SR +GK + ++ P R
Sbjct: 292 SGSQKRTHSRVRSHSWKRNHSRARSRTRKGILSQMGRHSQSRSHSKGKSQNQSRTPRRGR 351
Query: 140 SRRWRVPPTSRRNLL----------TRGPGRPAAAKG--QLGHPNLGKSGKHAR 181
S W P+ R+ RG P G Q G PN K H+R
Sbjct: 352 SHNWSRNPSKERSHSHSRSSSKERDHRGSSSPRKESGRSQSGSPN--KQRDHSR 403
Score = 30.0 bits (66), Expect = 1.2
Identities = 25/120 (20%), Positives = 45/120 (37%), Gaps = 7/120 (5%)
Query: 69 PNKHKNHKNS-------NSFRKLLLAESSSSYGRGQRLTAKAERNPADGEGRSPAAGRFS 121
P+K K+ S S+ ++++ SY + + N A R + +
Sbjct: 226 PSKEKSDNPSPSSSRKVKSYGQMIIPSREKSYSPTEMSSRVKSYNQASTRSRPQSHSQSR 285
Query: 122 ASRRSPRGKEKAEAANPRSRRWRVPPTSRRNLLTRGPGRPAAAKGQLGHPNLGKSGKHAR 181
+ RRS G +K + RS W+ + R+ +G Q + GKS +R
Sbjct: 286 SPRRSRSGSQKRTHSRVRSHSWKRNHSRARSRTRKGILSQMGRHSQSRSHSKGKSQNQSR 345
Score = 30.0 bits (66), Expect = 1.2
Identities = 22/85 (25%), Positives = 38/85 (44%), Gaps = 11/85 (12%)
Query: 70 NKHKNHKNSNSFRKLLLAESSSSYGRGQRLTAKAERNPADGEGRSPAA-GRFSASRRSPR 128
++ ++H S S K S Y R + + + A R+P+ G S SR S +
Sbjct: 588 SEERDHSRSRSPNK------QSGYSRPRA----SSKEKAHSRSRTPSKEGNHSQSRTSSK 637
Query: 129 GKEKAEAANPRSRRWRVPPTSRRNL 153
+ +++ PRS W+ PT +L
Sbjct: 638 ESDPSQSTVPRSPDWKRSPTRTSSL 662
>gi|239751929 PREDICTED: hypothetical protein [Homo sapiens]
Length = 382
Score = 30.8 bits (68), Expect = 0.68
Identities = 28/92 (30%), Positives = 38/92 (41%), Gaps = 14/92 (15%)
Query: 96 GQRLTAKAERNPADGEGRSPAAGRFSASRRSPRGKEKAEAANPRSRRWRVPPTSRRNLL- 154
GQR KAE A G R +RS G + R+ W+ P+ R + +
Sbjct: 234 GQRRVLKAEGARARARGGVCFGPRPGMQKRSGGG-----SGGQRAGGWQPGPSVRESCID 288
Query: 155 -------TRGPG-RPAAAKGQLGHPNLGKSGK 178
+RG G RP +G +G NLG GK
Sbjct: 289 MAGRERPSRGAGQRPQRVRGSVGPWNLGSLGK 320
>gi|239746415 PREDICTED: hypothetical protein XP_002344217 [Homo
sapiens]
Length = 382
Score = 30.8 bits (68), Expect = 0.68
Identities = 28/92 (30%), Positives = 38/92 (41%), Gaps = 14/92 (15%)
Query: 96 GQRLTAKAERNPADGEGRSPAAGRFSASRRSPRGKEKAEAANPRSRRWRVPPTSRRNLL- 154
GQR KAE A G R +RS G + R+ W+ P+ R + +
Sbjct: 234 GQRRVLKAEGARARARGGVCFGPRPGMQKRSGGG-----SGGQRAGGWQPGPSVRESCID 288
Query: 155 -------TRGPG-RPAAAKGQLGHPNLGKSGK 178
+RG G RP +G +G NLG GK
Sbjct: 289 MAGRERPSRGAGQRPQRVRGSVGPWNLGSLGK 320
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.317 0.131 0.387
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,542,736
Number of Sequences: 37866
Number of extensions: 370933
Number of successful extensions: 2131
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 127
Number of HSP's that attempted gapping in prelim test: 1989
Number of HSP's gapped (non-prelim): 260
length of query: 183
length of database: 18,247,518
effective HSP length: 96
effective length of query: 87
effective length of database: 14,612,382
effective search space: 1271277234
effective search space used: 1271277234
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.