Guide to the Human Genome
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Name: LOC100290157 Sequence: fasta or formatted (183aa) NCBI GI: 239750378
Description:

PREDICTED: hypothetical protein XP_002347409

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.7         16           3
 C cysteine            1.6          3           1
 D aspartate           1.6          3           1
 E glutamate           5.5         10           1
 F phenylalanine       2.7          5           1
 G glycine             7.7         14           1
 H histidine           3.8          7           1
 I isoleucine          4.9          9           2
 K lysine              6.6         12           1
 L leucine             8.7         16           3
 M methionine          2.2          4           1
 N asparagine          7.1         13           1
 P proline             6.0         11           2
 Q glutamine           2.2          4           1
 R arginine           13.7         25           2
 S serine             10.4         19           2
 T threonine           2.7          5           1
 V valine              1.6          3           1
 W tryptophan          0.5          1           1
 Y tyrosine            1.6          3           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002347409 
LOC100289020          1.000   PREDICTED: hypothetical protein XP_002343239 
LOC100293173          0.994   PREDICTED: hypothetical protein 
LOC651856             0.029   PREDICTED: similar to hCG2023245 
TMEM88B               0.029   PREDICTED: hypothetical protein LOC643965 
TMEM88B               0.029   PREDICTED: hypothetical protein LOC643965 
CHERP                 0.026   calcium homeostasis endoplasmic reticulum protein [...
LOC100292370          0.026   PREDICTED: hypothetical protein 
ZAR1                  0.023   zygote arrest 1 
SFRS4                 0.023   splicing factor, arginine/serine-rich 4 
LOC100292143          0.020   PREDICTED: hypothetical protein 
LOC100132261          0.020   PREDICTED: similar to hCG2023245 
PARD3B                0.020   par-3 partitioning defective 3 homolog B isoform a ...
PARD3B                0.020   par-3 partitioning defective 3 homolog B isoform b ...
LOC100130363          0.020   PREDICTED: hypothetical protein 
LOC100130174          0.020   PREDICTED: hypothetical protein 
LOC100130363          0.020   PREDICTED: hypothetical protein 
LOC100130174          0.020   PREDICTED: hypothetical protein 
LOC100130363          0.020   PREDICTED: hypothetical protein 
LOC100130174          0.020   PREDICTED: hypothetical protein 
LOC100170229          0.017   hypothetical protein LOC100170229 
LOC647055             0.017   PREDICTED: similar to hCG1790759 
SMG6                  0.017   Smg-6 homolog, nonsense mediated mRNA decay factor ...
LOC100289408          0.017   PREDICTED: hypothetical protein 
LOC100289408          0.017   PREDICTED: hypothetical protein XP_002344217 
YBX2                  0.017   Y box binding protein 2 
SRRM2                 0.017   splicing coactivator subunit SRm300 
MATK                  0.014   megakaryocyte-associated tyrosine kinase isoform b [...
ZNF318                0.014   zinc finger protein 318 
REXO1                 0.014   transcription elongation factor B polypeptide 3 bin...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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