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Search of human proteins with 239755607
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239755607 PREDICTED: hypothetical protein XP_002344620 [Homo
sapiens]
(102 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239755607 PREDICTED: hypothetical protein XP_002344620 [Homo ... 217 2e-57
gi|239754657 PREDICTED: hypothetical protein XP_002346062 [Homo ... 43 5e-05
gi|239749199 PREDICTED: hypothetical protein XP_002346952 [Homo ... 43 5e-05
gi|239743279 PREDICTED: hypothetical protein XP_002342816 [Homo ... 43 5e-05
gi|239508962 PREDICTED: hypothetical protein [Homo sapiens] 43 5e-05
gi|239751471 PREDICTED: hypothetical protein XP_002347846 [Homo ... 43 6e-05
gi|7710145 methyl-CpG binding domain protein 2 testis-specific i... 42 1e-04
gi|4505117 methyl-CpG binding domain protein 2 isoform 1 [Homo s... 42 1e-04
gi|50843837 hypothetical protein LOC55701 [Homo sapiens] 39 9e-04
gi|239753839 PREDICTED: hypothetical protein [Homo sapiens] 38 0.002
gi|55770876 notch4 preproprotein [Homo sapiens] 37 0.004
gi|239755909 PREDICTED: hypothetical protein [Homo sapiens] 36 0.006
gi|239754772 PREDICTED: hypothetical protein [Homo sapiens] 36 0.006
gi|239750423 PREDICTED: hypothetical protein XP_002347390 [Homo ... 36 0.006
gi|239749310 PREDICTED: hypothetical protein XP_002346992 [Homo ... 36 0.006
gi|239743404 PREDICTED: hypothetical protein XP_002342840 [Homo ... 36 0.006
gi|239509103 PREDICTED: hypothetical protein [Homo sapiens] 36 0.006
gi|134142824 forkhead box D2 [Homo sapiens] 36 0.006
gi|239754110 PREDICTED: hypothetical protein XP_002345881 [Homo ... 36 0.007
gi|55742678 glucocorticoid induced transcript 1 [Homo sapiens] 36 0.007
gi|4505531 oxysterol binding protein [Homo sapiens] 36 0.007
gi|170014689 VPS10 domain receptor protein SORCS 2 [Homo sapiens] 35 0.010
gi|57864582 hornerin [Homo sapiens] 35 0.017
gi|239756517 PREDICTED: hypothetical protein [Homo sapiens] 35 0.017
gi|239751026 PREDICTED: hypothetical protein XP_002347678 [Homo ... 35 0.017
gi|239747516 PREDICTED: hypothetical protein [Homo sapiens] 35 0.017
gi|239745455 PREDICTED: hypothetical protein XP_002343496 [Homo ... 35 0.017
gi|239741486 PREDICTED: hypothetical protein XP_002342213 [Homo ... 35 0.017
gi|239741394 PREDICTED: hypothetical protein XP_002342192 [Homo ... 35 0.017
gi|62422554 p21-activated kinase 4 isoform 1 [Homo sapiens] 35 0.017
>gi|239755607 PREDICTED: hypothetical protein XP_002344620 [Homo
sapiens]
Length = 102
Score = 217 bits (552), Expect = 2e-57
Identities = 102/102 (100%), Positives = 102/102 (100%)
Query: 1 MAPPGTGTGTCFSSAAASPSQASRGEGTRMRCRSARSPSSHAAGGGGARRTKREERGHRG 60
MAPPGTGTGTCFSSAAASPSQASRGEGTRMRCRSARSPSSHAAGGGGARRTKREERGHRG
Sbjct: 1 MAPPGTGTGTCFSSAAASPSQASRGEGTRMRCRSARSPSSHAAGGGGARRTKREERGHRG 60
Query: 61 GGPGAAGPGPGLGRAEAKGRNRRPPIGGASVLLDARWDWPNR 102
GGPGAAGPGPGLGRAEAKGRNRRPPIGGASVLLDARWDWPNR
Sbjct: 61 GGPGAAGPGPGLGRAEAKGRNRRPPIGGASVLLDARWDWPNR 102
>gi|239754657 PREDICTED: hypothetical protein XP_002346062 [Homo
sapiens]
Length = 384
Score = 43.1 bits (100), Expect = 5e-05
Identities = 32/94 (34%), Positives = 44/94 (46%), Gaps = 10/94 (10%)
Query: 2 APPG-TGTGTCFSSAAASPSQASRGE-------GTRMRCRSARSPSSHAAGGGGARRTKR 53
+PPG +G+GT FS+ PSQ G G R C SAR+ + AA A RT
Sbjct: 92 SPPGRSGSGTTFSAVPPRPSQHQSGSRLRPAAPGPRPGCSSARASPAPAAPQAAA-RTAP 150
Query: 54 EERGHRGGGPGAAGPGPG-LGRAEAKGRNRRPPI 86
G GPG+ G G +G ++ + PP+
Sbjct: 151 GRAASGGSGPGSRGQGSDQVGARPSRAGGQPPPL 184
>gi|239749199 PREDICTED: hypothetical protein XP_002346952 [Homo
sapiens]
Length = 209
Score = 43.1 bits (100), Expect = 5e-05
Identities = 32/94 (34%), Positives = 44/94 (46%), Gaps = 10/94 (10%)
Query: 2 APPG-TGTGTCFSSAAASPSQASRGE-------GTRMRCRSARSPSSHAAGGGGARRTKR 53
+PPG +G+GT FS+ PSQ G G R C SAR+ + AA A RT
Sbjct: 92 SPPGRSGSGTTFSAVPPRPSQHQSGSRLRPAAPGPRPGCSSARASPAPAAPQAAA-RTAP 150
Query: 54 EERGHRGGGPGAAGPGPG-LGRAEAKGRNRRPPI 86
G GPG+ G G +G ++ + PP+
Sbjct: 151 GRAASGGSGPGSRGQGSDQVGARPSRAGGQPPPL 184
>gi|239743279 PREDICTED: hypothetical protein XP_002342816 [Homo
sapiens]
Length = 384
Score = 43.1 bits (100), Expect = 5e-05
Identities = 32/94 (34%), Positives = 44/94 (46%), Gaps = 10/94 (10%)
Query: 2 APPG-TGTGTCFSSAAASPSQASRGE-------GTRMRCRSARSPSSHAAGGGGARRTKR 53
+PPG +G+GT FS+ PSQ G G R C SAR+ + AA A RT
Sbjct: 92 SPPGRSGSGTTFSAVPPRPSQHQSGSRLRPAAPGPRPGCSSARASPAPAAPQAAA-RTAP 150
Query: 54 EERGHRGGGPGAAGPGPG-LGRAEAKGRNRRPPI 86
G GPG+ G G +G ++ + PP+
Sbjct: 151 GRAASGGSGPGSRGQGSDQVGARPSRAGGQPPPL 184
>gi|239508962 PREDICTED: hypothetical protein [Homo sapiens]
Length = 384
Score = 43.1 bits (100), Expect = 5e-05
Identities = 32/94 (34%), Positives = 44/94 (46%), Gaps = 10/94 (10%)
Query: 2 APPG-TGTGTCFSSAAASPSQASRGE-------GTRMRCRSARSPSSHAAGGGGARRTKR 53
+PPG +G+GT FS+ PSQ G G R C SAR+ + AA A RT
Sbjct: 92 SPPGRSGSGTTFSAVPPRPSQHQSGSRLRPAAPGPRPGCSSARASPAPAAPQAAA-RTAP 150
Query: 54 EERGHRGGGPGAAGPGPG-LGRAEAKGRNRRPPI 86
G GPG+ G G +G ++ + PP+
Sbjct: 151 GRAASGGSGPGSRGQGSDQVGARPSRAGGQPPPL 184
>gi|239751471 PREDICTED: hypothetical protein XP_002347846 [Homo
sapiens]
Length = 870
Score = 42.7 bits (99), Expect = 6e-05
Identities = 30/83 (36%), Positives = 36/83 (43%), Gaps = 3/83 (3%)
Query: 3 PPGTGTGTCFSSAAASPSQASRGEGTRMRCRSARSPSSHAAGGGGARRTKREERGHRGGG 62
P G G C+ + A PS RG R+ S R +S A GG G R R RG G
Sbjct: 449 PLGEARGPCWKARGAVPSGRLRGRPGRVAGASGRRGASQARGGTG-RAPARLRRGR--GM 505
Query: 63 PGAAGPGPGLGRAEAKGRNRRPP 85
PG G G G GR ++ P
Sbjct: 506 PGRVGNGVGEGRGASEPEGEPEP 528
>gi|7710145 methyl-CpG binding domain protein 2 testis-specific
isoform [Homo sapiens]
Length = 302
Score = 42.0 bits (97), Expect = 1e-04
Identities = 27/82 (32%), Positives = 37/82 (45%), Gaps = 4/82 (4%)
Query: 13 SSAAASPSQASRGEGTRMRCRSARSPSSHAAGGGGARRTKREERGHRGGGPGAAGPGPGL 72
S A + G+G+ + A GGG R + ++ G RGGG G G G
Sbjct: 24 SGAGGDSAIEQGGQGSALAPSPVSGVRREGARGGGRGRGRWKQAG-RGGGVCGRGRGRGR 82
Query: 73 GRAEAKGRNR---RPPIGGASV 91
GR +GR R RPP GG+ +
Sbjct: 83 GRGRGRGRGRGRGRPPSGGSGL 104
Score = 28.1 bits (61), Expect = 1.6
Identities = 26/89 (29%), Positives = 30/89 (33%), Gaps = 15/89 (16%)
Query: 13 SSAAASPSQASRGEGTRMRCRSARSPSSHAAGGGGARRTKREERGHR------------- 59
S+ A SP R EG R R GGG R + RG
Sbjct: 39 SALAPSPVSGVRREGARGGGRGRGRWKQAGRGGGVCGRGRGRGRGRGRGRGRGRGRGRPP 98
Query: 60 --GGGPGAAGPGPGLGRAEAKGRNRRPPI 86
G G G G G G G + G RR P+
Sbjct: 99 SGGSGLGGDGGGCGGGGSGGGGAPRREPV 127
Score = 26.6 bits (57), Expect = 4.5
Identities = 28/90 (31%), Positives = 31/90 (34%), Gaps = 13/90 (14%)
Query: 5 GTGTGTCFSSAAASPSQASRGEGTRMRCRSARSPSSHAAGGGGARRTKREERGHRGGGP- 63
G G G C RG G R R R P S +G GG GG P
Sbjct: 68 GRGGGVCGRGRGRG---RGRGRG-RGRGRGRGRPPSGGSGLGGDGGGCGGGGSGGGGAPR 123
Query: 64 --------GAAGPGPGLGRAEAKGRNRRPP 85
G+AGPGP RA G+ P
Sbjct: 124 REPVPFPSGSAGPGPRGPRATESGKRMDCP 153
>gi|4505117 methyl-CpG binding domain protein 2 isoform 1 [Homo
sapiens]
Length = 411
Score = 42.0 bits (97), Expect = 1e-04
Identities = 27/82 (32%), Positives = 37/82 (45%), Gaps = 4/82 (4%)
Query: 13 SSAAASPSQASRGEGTRMRCRSARSPSSHAAGGGGARRTKREERGHRGGGPGAAGPGPGL 72
S A + G+G+ + A GGG R + ++ G RGGG G G G
Sbjct: 24 SGAGGDSAIEQGGQGSALAPSPVSGVRREGARGGGRGRGRWKQAG-RGGGVCGRGRGRGR 82
Query: 73 GRAEAKGRNR---RPPIGGASV 91
GR +GR R RPP GG+ +
Sbjct: 83 GRGRGRGRGRGRGRPPSGGSGL 104
Score = 28.1 bits (61), Expect = 1.6
Identities = 26/89 (29%), Positives = 30/89 (33%), Gaps = 15/89 (16%)
Query: 13 SSAAASPSQASRGEGTRMRCRSARSPSSHAAGGGGARRTKREERGHR------------- 59
S+ A SP R EG R R GGG R + RG
Sbjct: 39 SALAPSPVSGVRREGARGGGRGRGRWKQAGRGGGVCGRGRGRGRGRGRGRGRGRGRGRPP 98
Query: 60 --GGGPGAAGPGPGLGRAEAKGRNRRPPI 86
G G G G G G G + G RR P+
Sbjct: 99 SGGSGLGGDGGGCGGGGSGGGGAPRREPV 127
Score = 26.6 bits (57), Expect = 4.5
Identities = 28/90 (31%), Positives = 31/90 (34%), Gaps = 13/90 (14%)
Query: 5 GTGTGTCFSSAAASPSQASRGEGTRMRCRSARSPSSHAAGGGGARRTKREERGHRGGGP- 63
G G G C RG G R R R P S +G GG GG P
Sbjct: 68 GRGGGVCGRGRGRG---RGRGRG-RGRGRGRGRPPSGGSGLGGDGGGCGGGGSGGGGAPR 123
Query: 64 --------GAAGPGPGLGRAEAKGRNRRPP 85
G+AGPGP RA G+ P
Sbjct: 124 REPVPFPSGSAGPGPRGPRATESGKRMDCP 153
>gi|50843837 hypothetical protein LOC55701 [Homo sapiens]
Length = 1519
Score = 38.9 bits (89), Expect = 9e-04
Identities = 32/93 (34%), Positives = 34/93 (36%), Gaps = 9/93 (9%)
Query: 3 PPGTGTGTCFSSAAASPSQASRGEGT-RMRCRSARSPSSHAAG--GGGARRTKREERGHR 59
PPG G SS ASP E P + A G G E RG
Sbjct: 305 PPGEG-----SSTGASPESPPGAEAVPEAAVLEVSEPPAEAVGEASGSCPLRPGELRGGG 359
Query: 60 GGGPGAAGPGPGLGRAEAKGRNRRPPIGGASVL 92
GGG GA GP PG R KG R+ G L
Sbjct: 360 GGGQGAEGP-PGTPRRTGKGNRRKKRAAGRGAL 391
Score = 27.7 bits (60), Expect = 2.0
Identities = 25/78 (32%), Positives = 32/78 (41%), Gaps = 11/78 (14%)
Query: 18 SPSQASRGEGTRMRCRSARSPSSHAAGGGGARRTKREERGHRGGGP----GAAGPGPGLG 73
SP+ A EG+ R P+ AGG G R R +G GP GA PG G
Sbjct: 255 SPTDA---EGSPGLSRVRTVPTRKGAGGKGRHRRHRAWMHQKGLGPRGQDGARPPGEG-- 309
Query: 74 RAEAKGRNRRPPIGGASV 91
+ G + P G +V
Sbjct: 310 --SSTGASPESPPGAEAV 325
>gi|239753839 PREDICTED: hypothetical protein [Homo sapiens]
Length = 257
Score = 37.7 bits (86), Expect = 0.002
Identities = 32/98 (32%), Positives = 37/98 (37%), Gaps = 13/98 (13%)
Query: 4 PGTGTGTCF---SSAAASPSQASRGEGTRMRCRSARSPSSHAAGGGGARRTKREER-GHR 59
PG G CF S+A P++ASR G R P A G G A T+R G
Sbjct: 69 PGAGGPLCFPARSAAWGPPARASRAAGRR---AGPAGPPCRAPGRGRAAATRRSPAPGTA 125
Query: 60 GGGP------GAAGPGPGLGRAEAKGRNRRPPIGGASV 91
G P G A G R PP GG S+
Sbjct: 126 RGSPAGVERAGGATAASSAGTRSVPARRLPPPCGGTSL 163
>gi|55770876 notch4 preproprotein [Homo sapiens]
Length = 2003
Score = 36.6 bits (83), Expect = 0.004
Identities = 26/73 (35%), Positives = 30/73 (41%), Gaps = 3/73 (4%)
Query: 7 GTGTCFSSAAASPSQASRGEGTRMRCRSARSPSSHAAGGGGARRTKREERGHRGGGPGAA 66
G G C + S A+RG G CRS S AGGG R +R G RG P A
Sbjct: 1872 GGGACLQARTWSVDLAARGGGAYSHCRSL---SGVGAGGGPTPRGRRFSAGMRGPRPNPA 1928
Query: 67 GPGPGLGRAEAKG 79
G A +G
Sbjct: 1929 IMRGRYGVAAGRG 1941
Score = 27.7 bits (60), Expect = 2.0
Identities = 27/95 (28%), Positives = 33/95 (34%), Gaps = 12/95 (12%)
Query: 2 APPGTGTGTCFSSAAASPSQASRGEGTRMRCRSARSPSSHAAGGGGAR-RTKREERGHRG 60
A PG G + S S G G RCR+ + + GG + RT + RG
Sbjct: 1831 ATPGREAGPFPRARTVSVSVPPHGGGALPRCRTLSAGAGPRGGGACLQARTWSVDLAARG 1890
Query: 61 GGP-----------GAAGPGPGLGRAEAKGRNRRP 84
GG GP P R A R RP
Sbjct: 1891 GGAYSHCRSLSGVGAGGGPTPRGRRFSAGMRGPRP 1925
>gi|239755909 PREDICTED: hypothetical protein [Homo sapiens]
Length = 212
Score = 36.2 bits (82), Expect = 0.006
Identities = 26/69 (37%), Positives = 32/69 (46%), Gaps = 10/69 (14%)
Query: 18 SPSQASRGEGTRMR--CRSARSPSSHAAGGGGARRTKREERGHRGGGPGAAGPGPGLGRA 75
SP++ R R+R C + P G GGA ++ G PGAAGPGPG G A
Sbjct: 76 SPAERRRKMWRRLRRKCWKEQGPG----GRGGASSSELRALGR----PGAAGPGPGSGDA 127
Query: 76 EAKGRNRRP 84
A RP
Sbjct: 128 SALAGGPRP 136
>gi|239754772 PREDICTED: hypothetical protein [Homo sapiens]
Length = 95
Score = 36.2 bits (82), Expect = 0.006
Identities = 29/69 (42%), Positives = 33/69 (47%), Gaps = 13/69 (18%)
Query: 20 SQASRGEGTRMRCRSARSPSSHAAGGGGARRTKREERGHRGGGPGAAGPGPGLGRAEAKG 79
SQASR E R R R R G RRT+R+ +G RGGGPG G R KG
Sbjct: 8 SQASRRE-RRPRQRQHR---------GRERRTRRDAQGPRGGGPGFRAGG---RRTPDKG 54
Query: 80 RNRRPPIGG 88
R P + G
Sbjct: 55 RPGSPGVPG 63
>gi|239750423 PREDICTED: hypothetical protein XP_002347390 [Homo
sapiens]
Length = 212
Score = 36.2 bits (82), Expect = 0.006
Identities = 26/69 (37%), Positives = 32/69 (46%), Gaps = 10/69 (14%)
Query: 18 SPSQASRGEGTRMR--CRSARSPSSHAAGGGGARRTKREERGHRGGGPGAAGPGPGLGRA 75
SP++ R R+R C + P G GGA ++ G PGAAGPGPG G A
Sbjct: 76 SPAERRRKMWRRLRRKCWKEQGPG----GRGGASSSELRALGR----PGAAGPGPGSGDA 127
Query: 76 EAKGRNRRP 84
A RP
Sbjct: 128 SALAGGPRP 136
>gi|239749310 PREDICTED: hypothetical protein XP_002346992 [Homo
sapiens]
Length = 95
Score = 36.2 bits (82), Expect = 0.006
Identities = 29/69 (42%), Positives = 33/69 (47%), Gaps = 13/69 (18%)
Query: 20 SQASRGEGTRMRCRSARSPSSHAAGGGGARRTKREERGHRGGGPGAAGPGPGLGRAEAKG 79
SQASR E R R R R G RRT+R+ +G RGGGPG G R KG
Sbjct: 8 SQASRRE-RRPRQRQHR---------GRERRTRRDAQGPRGGGPGFRAGG---RRTPDKG 54
Query: 80 RNRRPPIGG 88
R P + G
Sbjct: 55 RPGSPGVPG 63
>gi|239743404 PREDICTED: hypothetical protein XP_002342840 [Homo
sapiens]
Length = 95
Score = 36.2 bits (82), Expect = 0.006
Identities = 29/69 (42%), Positives = 33/69 (47%), Gaps = 13/69 (18%)
Query: 20 SQASRGEGTRMRCRSARSPSSHAAGGGGARRTKREERGHRGGGPGAAGPGPGLGRAEAKG 79
SQASR E R R R R G RRT+R+ +G RGGGPG G R KG
Sbjct: 8 SQASRRE-RRPRQRQHR---------GRERRTRRDAQGPRGGGPGFRAGG---RRTPDKG 54
Query: 80 RNRRPPIGG 88
R P + G
Sbjct: 55 RPGSPGVPG 63
>gi|239509103 PREDICTED: hypothetical protein [Homo sapiens]
Length = 95
Score = 36.2 bits (82), Expect = 0.006
Identities = 29/69 (42%), Positives = 33/69 (47%), Gaps = 13/69 (18%)
Query: 20 SQASRGEGTRMRCRSARSPSSHAAGGGGARRTKREERGHRGGGPGAAGPGPGLGRAEAKG 79
SQASR E R R R R G RRT+R+ +G RGGGPG G R KG
Sbjct: 8 SQASRRE-RRPRQRQHR---------GRERRTRRDAQGPRGGGPGFRAGG---RRTPDKG 54
Query: 80 RNRRPPIGG 88
R P + G
Sbjct: 55 RPGSPGVPG 63
>gi|134142824 forkhead box D2 [Homo sapiens]
Length = 495
Score = 36.2 bits (82), Expect = 0.006
Identities = 33/97 (34%), Positives = 41/97 (42%), Gaps = 16/97 (16%)
Query: 7 GTGTCFSSAAASPSQASRGEG--TRMRCRSARSPSSHAAGGGGARRTKREE------RGH 58
G F +A+ SP A G T + + ++ + AGGGGA +R GH
Sbjct: 361 GCAKAFYAASLSPPAAGTAAGLPTALLRQGLKTDAGGGAGGGGAGAGQRPSFSIDHIMGH 420
Query: 59 RGGG---PGAAGPGPGLGRAEAKGRNRRPPIGGASVL 92
GGG PGA PG A A G P G A VL
Sbjct: 421 GGGGAAPPGAGEGSPGPPFAAAAG-----PGGQAQVL 452
Score = 29.3 bits (64), Expect = 0.70
Identities = 17/46 (36%), Positives = 19/46 (41%), Gaps = 1/46 (2%)
Query: 46 GGARRTKREERGHRGGGPGAAGPGPGLGRAE-AKGRNRRPPIGGAS 90
GG + RG A PGPG A A G PP GGA+
Sbjct: 75 GGCSDGEPRALASRGAAAAAGSPGPGAAAARGAAGPGPGPPSGGAA 120
Score = 27.7 bits (60), Expect = 2.0
Identities = 25/89 (28%), Positives = 33/89 (37%), Gaps = 20/89 (22%)
Query: 3 PPGTGTGTCFSSAAASPSQASRGE--------------GTRMRCRSA---RSPSSHAAGG 45
PPG T + F+ A ++P+ A G + C A S S AAG
Sbjct: 319 PPGPPTASVFAGAGSAPAPAPASGSGPGPGPAGLPAFLGAELGCAKAFYAASLSPPAAGT 378
Query: 46 GGARRTKREERGHR---GGGPGAAGPGPG 71
T +G + GGG G G G G
Sbjct: 379 AAGLPTALLRQGLKTDAGGGAGGGGAGAG 407
>gi|239754110 PREDICTED: hypothetical protein XP_002345881 [Homo
sapiens]
Length = 284
Score = 35.8 bits (81), Expect = 0.007
Identities = 24/81 (29%), Positives = 28/81 (34%), Gaps = 5/81 (6%)
Query: 3 PPGTGTGTCFSSAAASPSQASRGEGTRMRCRSARSPSSHAAGGGGARRTKREERGHRGGG 62
P T T A G G RS+ GGGG R ++R G GG
Sbjct: 145 PAAAATTTALDGPGAGGGAERGGSG-----RSSAGGGGGGGGGGGGRGSRRGRGGGERGG 199
Query: 63 PGAAGPGPGLGRAEAKGRNRR 83
P A L +GR RR
Sbjct: 200 PRAQAVRRRLSALRGRGRRRR 220
Score = 28.1 bits (61), Expect = 1.6
Identities = 18/58 (31%), Positives = 22/58 (37%), Gaps = 3/58 (5%)
Query: 23 SRGEGTRMRCRSARSPSSHAAGGGGARRTKREERGHRGGGPGAAGPGPGLGRAEAKGR 80
+RG T + + GGGA R GGG G G G GR +GR
Sbjct: 138 ARGAATLPAAAATTTALDGPGAGGGAERGGSGRSSAGGGGGGGGGGG---GRGSRRGR 192
Score = 27.3 bits (59), Expect = 2.7
Identities = 15/42 (35%), Positives = 15/42 (35%)
Query: 43 AGGGGARRTKREERGHRGGGPGAAGPGPGLGRAEAKGRNRRP 84
AGGG R GGG G G G G R G P
Sbjct: 159 AGGGAERGGSGRSSAGGGGGGGGGGGGRGSRRGRGGGERGGP 200
>gi|55742678 glucocorticoid induced transcript 1 [Homo sapiens]
Length = 547
Score = 35.8 bits (81), Expect = 0.007
Identities = 24/65 (36%), Positives = 29/65 (44%), Gaps = 8/65 (12%)
Query: 10 TCFSSAAASPSQASRGEGTRMRCRSARSPSSHAAGGGGARRTKREERGHRGGGPGAAGPG 69
T SS+++S SQ RMR +A SP + AA G G G GGG P
Sbjct: 3 TASSSSSSSSSQTPHPPSQRMRRSAAGSPPAVAAAGSG--------NGAGGGGGVGCAPA 54
Query: 70 PGLGR 74
G GR
Sbjct: 55 AGAGR 59
Score = 26.6 bits (57), Expect = 4.5
Identities = 15/48 (31%), Positives = 19/48 (39%)
Query: 4 PGTGTGTCFSSAAASPSQASRGEGTRMRCRSARSPSSHAAGGGGARRT 51
PG G SS + A + R + R RSP SH RR+
Sbjct: 98 PGAARGPSPSSPTPPAAAAPAEQAPRAKGRPRRSPESHRRSSSPERRS 145
>gi|4505531 oxysterol binding protein [Homo sapiens]
Length = 807
Score = 35.8 bits (81), Expect = 0.007
Identities = 29/76 (38%), Positives = 33/76 (43%), Gaps = 14/76 (18%)
Query: 28 TRMRCRSARSPSSHAA-GGGGARRTKREERGHRG-GGPG------------AAGPGPGLG 73
T +R P++ AA GGGGA G RG GPG A GPGPG G
Sbjct: 4 TELRGVVGPGPAAIAALGGGGAGPPVVGGGGGRGDAGPGSGAASGTVVAAAAGGPGPGAG 63
Query: 74 RAEAKGRNRRPPIGGA 89
A G PP GG+
Sbjct: 64 GVAAAGPAPAPPTGGS 79
Score = 25.8 bits (55), Expect = 7.7
Identities = 22/70 (31%), Positives = 30/70 (42%), Gaps = 17/70 (24%)
Query: 2 APPGTG--TGTCFSSAAASPSQASRGEGTRMRCRSARSPSSHAAGGGGARRTKREERGHR 59
A PG+G +GT ++AA P G G A +P + +GG GA
Sbjct: 39 AGPGSGAASGTVVAAAAGGPGP---GAGGVAAAGPAPAPPTGGSGGSGA----------- 84
Query: 60 GGGPGAAGPG 69
GG G+A G
Sbjct: 85 -GGSGSAREG 93
>gi|170014689 VPS10 domain receptor protein SORCS 2 [Homo sapiens]
Length = 1159
Score = 35.4 bits (80), Expect = 0.010
Identities = 29/76 (38%), Positives = 35/76 (46%), Gaps = 5/76 (6%)
Query: 9 GTCFSSAAASPSQASRGEGTRMRCRSARSPSSHAA--GGGGARRTKREERGHRGGGPGAA 66
G C +A SP G ++ R RSP + A GGG R+ + E G G PG A
Sbjct: 44 GAC-GAAGRSPEPGRLGPHAQLT-RVPRSPPAGRAEPGGGEDRQARGTEPGAPGPSPGPA 101
Query: 67 GPGPGLGRAEAKGRNR 82
PGPG A A G R
Sbjct: 102 -PGPGEDGAPAAGYRR 116
>gi|57864582 hornerin [Homo sapiens]
Length = 2850
Score = 34.7 bits (78), Expect = 0.017
Identities = 23/79 (29%), Positives = 37/79 (46%), Gaps = 5/79 (6%)
Query: 5 GTGTGTCFSSAAASPSQASRGEGTRMRCRSARSPSSHAAGGGGARRTKREERGHRGGG-- 62
G+G + + + Q+SRGE S+RS S + G G+R++ R G G
Sbjct: 1656 GSGHSSGYGQHGSRSGQSSRGE---RHGSSSRSSSRYGQHGSGSRQSSGHGRQGSGSGQS 1712
Query: 63 PGAAGPGPGLGRAEAKGRN 81
P G GLG + + G++
Sbjct: 1713 PSRGRHGSGLGHSSSHGQH 1731
Score = 32.3 bits (72), Expect = 0.082
Identities = 24/76 (31%), Positives = 34/76 (44%), Gaps = 6/76 (7%)
Query: 5 GTGTGTCFSSAAASPSQASRGEGTRMRCRSARSPSSHAAGGGGARRTKREERGHRGGGPG 64
G+G + + Q+SRGE + SA S SS+ G G+R++ R G G
Sbjct: 484 GSGHSSGHGQHGSRSGQSSRGE---RQGSSAGSSSSYGQHGSGSRQSLGHSRHGSGSG-- 538
Query: 65 AAGPGPGLGRAEAKGR 80
P P GR E+ R
Sbjct: 539 -QSPSPSRGRHESGSR 553
Score = 32.3 bits (72), Expect = 0.082
Identities = 23/96 (23%), Positives = 36/96 (37%), Gaps = 10/96 (10%)
Query: 5 GTGTGTCFSSAAASPSQASRGEGTRMRCRSARSPSSHAAG----------GGGARRTKRE 54
G+G + + + Q+SRGE S+ S H +G G G+ ++
Sbjct: 1420 GSGHSSSYEQHGSRSGQSSRGERHGSSSGSSSSYGQHGSGSRQSLGHGQHGSGSGQSPSP 1479
Query: 55 ERGHRGGGPGAAGPGPGLGRAEAKGRNRRPPIGGAS 90
RG G G G + G +R P G+S
Sbjct: 1480 SRGRHGSGSGQSSSYSPYGSGSGWSSSRGPYESGSS 1515
Score = 32.3 bits (72), Expect = 0.082
Identities = 24/89 (26%), Positives = 38/89 (42%), Gaps = 14/89 (15%)
Query: 5 GTGTGTCFSSAAASPSQASRGEGTRMRCRSARSPSSHAAG----------GGGARRTKRE 54
G+G + + + Q+SRGE S+ S H +G G G+ ++
Sbjct: 1890 GSGHSSSYEQHGSRSGQSSRGEQHGSSSGSSSSYGQHGSGSRQSLGHGQHGSGSGQSPSP 1949
Query: 55 ERGHRGGGPGAA---GP-GPGLGRAEAKG 79
RG G G G + GP G G G + ++G
Sbjct: 1950 SRGRHGSGSGQSSSYGPYGSGSGWSSSRG 1978
Score = 31.2 bits (69), Expect = 0.18
Identities = 22/89 (24%), Positives = 36/89 (40%), Gaps = 14/89 (15%)
Query: 5 GTGTGTCFSSAAASPSQASRGEGTRMRCRSARSPSSHAAG----------GGGARRTKRE 54
G+G + + + Q+SRGE S+ S H +G G G+ ++
Sbjct: 2360 GSGHSSSYEQHGSRSGQSSRGERHGSSSGSSSSYGQHGSGSRQSLGHGQHGSGSGQSPSP 2419
Query: 55 ERGHRGGGPGAAGP----GPGLGRAEAKG 79
RG G G G + G G G + ++G
Sbjct: 2420 SRGRHGSGSGQSSSYSPYGSGSGWSSSRG 2448
Score = 30.0 bits (66), Expect = 0.41
Identities = 22/79 (27%), Positives = 36/79 (45%), Gaps = 5/79 (6%)
Query: 5 GTGTGTCFSSAAASPSQASRGEGTRMRCRSARSPSSHAAGGGGARRTKREERGHRGG--G 62
G+G + + + Q+SRGE R S+ S SS+ G G+R++ R G
Sbjct: 250 GSGHSSGYGQHGSRSGQSSRGERHR---SSSGSSSSYGQHGSGSRQSLGHGRQGSGSRQS 306
Query: 63 PGAAGPGPGLGRAEAKGRN 81
P G G G + + G++
Sbjct: 307 PSHVRHGSGSGHSSSHGQH 325
Score = 29.6 bits (65), Expect = 0.53
Identities = 22/75 (29%), Positives = 31/75 (41%), Gaps = 6/75 (8%)
Query: 13 SSAAASPSQASRGEGTRMRCRSARSPSSHAAGGG--GARRTKREERGHRGGGPGAAGP-- 68
S ++S Q G S S HA+G G G+ + G RG G G +
Sbjct: 848 SGQSSSSGQHDSSSGQSSSYGQHESASHHASGRGRHGSGSGQSPGHGQRGSGSGQSPSYG 907
Query: 69 --GPGLGRAEAKGRN 81
G G GR+ + GR+
Sbjct: 908 RHGSGSGRSSSSGRH 922
Score = 29.3 bits (64), Expect = 0.70
Identities = 22/76 (28%), Positives = 30/76 (39%), Gaps = 12/76 (15%)
Query: 6 TGTGTCFSSAAASPSQASRGEGTRMRCRSARSPSSHAAGGGGARRTKREERGHRGGGPGA 65
+G G S + SP RG G S +SPS G G R + G G G
Sbjct: 878 SGRGRHGSGSGQSPGHGQRGSG------SGQSPSYGRHGSGSGRSS---SSGRHGSG--- 925
Query: 66 AGPGPGLGRAEAKGRN 81
+G G G + G++
Sbjct: 926 SGQSSGFGHKSSSGQS 941
Score = 29.3 bits (64), Expect = 0.70
Identities = 24/87 (27%), Positives = 37/87 (42%), Gaps = 12/87 (13%)
Query: 5 GTGTGTCFSSAAASPSQASRGE------GTRMRCRSARSPSSHAAGGG--GARRTKREER 56
G+G + + + Q+SRGE G+ R S S ++G G G+ R
Sbjct: 2126 GSGHSSGYGQHGSRSGQSSRGERHGSSSGSSSRYGQHGSGSRQSSGHGRQGSGSGHSPSR 2185
Query: 57 GHRGGGPGAAGP----GPGLGRAEAKG 79
G G G G + G G GR+ ++G
Sbjct: 2186 GRHGSGSGHSSSHGQHGSGSGRSSSRG 2212
Score = 28.9 bits (63), Expect = 0.91
Identities = 19/77 (24%), Positives = 32/77 (41%), Gaps = 7/77 (9%)
Query: 6 TGTGTCFSSAAASPSQASRGEGTRMRCRSARSPSSHAAGGGGARRTK-REERGHRGGGPG 64
+G G C S + SP+ G G S +S S+ G G + + + + G G
Sbjct: 190 SGRGQCGSGSGQSPNYGQHGSG------SGQSSSNDTHGSGSGQSSGFSQHKSSSGQSSG 243
Query: 65 AAGPGPGLGRAEAKGRN 81
+ G G G + G++
Sbjct: 244 YSQHGSGSGHSSGYGQH 260
Score = 28.1 bits (61), Expect = 1.6
Identities = 21/76 (27%), Positives = 29/76 (38%), Gaps = 18/76 (23%)
Query: 6 TGTGTCFSSAAASPSQASRGEGTRMRCRSARSPSSHAAGGGGARRTKREERGHRGGGPGA 65
+G G S + SP RG G+R +SPS G G R + +
Sbjct: 2053 SGYGRQGSGSGQSPGHGQRGSGSR------QSPSYGRHGSGSGRSSSSGQH--------- 2097
Query: 66 AGPGPGLGRAEAKGRN 81
GPGLG + G +
Sbjct: 2098 ---GPGLGESSGFGHH 2110
Score = 27.7 bits (60), Expect = 2.0
Identities = 20/71 (28%), Positives = 31/71 (43%), Gaps = 11/71 (15%)
Query: 13 SSAAASPSQASRGEGTRMRCRSARSPSSHAAGGGGARRTKREERGHRGGGPG-AAGPGP- 70
SS+ +S S G G+R H G G+ ++ RG G G G ++ GP
Sbjct: 975 SSSGSSSSYGQHGSGSRQSL-------GHGQHGSGSGQSPSPSRGRHGSGSGQSSSYGPY 1027
Query: 71 --GLGRAEAKG 79
G G + ++G
Sbjct: 1028 RSGSGWSSSRG 1038
Score = 27.7 bits (60), Expect = 2.0
Identities = 25/91 (27%), Positives = 39/91 (42%), Gaps = 20/91 (21%)
Query: 5 GTGTGTCFSSAAASPSQASRGEGTRMRCRSARSPSSH-AAGGGGARRT-----------K 52
G+G + + + Q+SRGE R S+ SSH G G+R++ +
Sbjct: 2596 GSGHSSGYGQHGSRSGQSSRGE----RHGSSSGSSSHYGQHGSGSRQSSGHGRQGSGSGQ 2651
Query: 53 REERGHRGGGPGAAGP----GPGLGRAEAKG 79
RG G G G + G G GR+ ++G
Sbjct: 2652 SPSRGRHGSGLGHSSSHGQHGSGSGRSSSRG 2682
Score = 27.3 bits (59), Expect = 2.7
Identities = 22/72 (30%), Positives = 28/72 (38%), Gaps = 12/72 (16%)
Query: 6 TGTGTCFSSAAASPSQASRGEGTRMRCRSARSPSSHAAGGGGARRTKREERGHRGGGPGA 65
+G G S + SP RG G+R +SPS G G R + G G G
Sbjct: 1113 SGYGRQGSGSGQSPGHGQRGSGSR------QSPSYGRHGSGSGRSS---SSGQHGSG--- 1160
Query: 66 AGPGPGLGRAEA 77
G G G E+
Sbjct: 1161 LGESSGFGHHES 1172
Score = 27.3 bits (59), Expect = 2.7
Identities = 21/81 (25%), Positives = 31/81 (38%), Gaps = 4/81 (4%)
Query: 5 GTGTGTCFSSAAASPSQASRGEGTRMRCRSARSPSSHAAGGGGARRTKREERGHRGGGPG 64
G T S+ +S G+ + R + S S G GA + RG G G G
Sbjct: 1311 GQHGSTSGQSSTFDQEGSSTGQSSSYGHRGSGSSQSSGYGRHGAGSGQSPSRGRHGSGSG 1370
Query: 65 AAGP----GPGLGRAEAKGRN 81
+ G G G + + GR+
Sbjct: 1371 HSSSYGQHGSGSGWSSSSGRH 1391
Score = 27.3 bits (59), Expect = 2.7
Identities = 22/72 (30%), Positives = 28/72 (38%), Gaps = 12/72 (16%)
Query: 6 TGTGTCFSSAAASPSQASRGEGTRMRCRSARSPSSHAAGGGGARRTKREERGHRGGGPGA 65
+G G S + SP RG G+R +SPS G G R + G G G
Sbjct: 1583 SGYGRQGSGSGQSPGHGQRGSGSR------QSPSYGRHGSGSGRSS---SSGQHGSG--- 1630
Query: 66 AGPGPGLGRAEA 77
G G G E+
Sbjct: 1631 LGESSGFGHHES 1642
Score = 27.3 bits (59), Expect = 2.7
Identities = 22/72 (30%), Positives = 28/72 (38%), Gaps = 12/72 (16%)
Query: 6 TGTGTCFSSAAASPSQASRGEGTRMRCRSARSPSSHAAGGGGARRTKREERGHRGGGPGA 65
+G G S + SP RG G+R +SPS G G R + G G G
Sbjct: 2523 SGYGRQGSGSGQSPGHGQRGSGSR------QSPSYGRHGSGSGRSS---SSGQHGSG--- 2570
Query: 66 AGPGPGLGRAEA 77
G G G E+
Sbjct: 2571 LGESSGFGHHES 2582
Score = 26.9 bits (58), Expect = 3.5
Identities = 20/77 (25%), Positives = 34/77 (44%), Gaps = 12/77 (15%)
Query: 5 GTGTGTCFSSAAASPSQASRGEGTRMRCRSARSPSSHAAGGGGARRTKREERGHRGGGPG 64
G+G + + + Q+SR E S+ S SS+ G G+R++ G G
Sbjct: 950 GSGHSSSYEQHGSRSGQSSRSE---QHGSSSGSSSSYGQHGSGSRQSL---------GHG 997
Query: 65 AAGPGPGLGRAEAKGRN 81
G G G + ++GR+
Sbjct: 998 QHGSGSGQSPSPSRGRH 1014
Score = 26.9 bits (58), Expect = 3.5
Identities = 22/85 (25%), Positives = 32/85 (37%), Gaps = 8/85 (9%)
Query: 13 SSAAASPSQASRGEGT-------RMRCRSARSPSSHAAGGGGARRTKREERGHRGGGPGA 65
+S+ S S G G+ R S +SP H G G+R++ R G G +
Sbjct: 1094 ASSGQSSSHGQHGSGSSQSSGYGRQGSGSGQSPG-HGQRGSGSRQSPSYGRHGSGSGRSS 1152
Query: 66 AGPGPGLGRAEAKGRNRRPPIGGAS 90
+ G G E+ G G S
Sbjct: 1153 SSGQHGSGLGESSGFGHHESSSGQS 1177
Score = 26.9 bits (58), Expect = 3.5
Identities = 22/85 (25%), Positives = 32/85 (37%), Gaps = 8/85 (9%)
Query: 13 SSAAASPSQASRGEGT-------RMRCRSARSPSSHAAGGGGARRTKREERGHRGGGPGA 65
+S+ S S G G+ R S +SP H G G+R++ R G G +
Sbjct: 1564 ASSGQSSSHGQHGSGSSQSSGYGRQGSGSGQSPG-HGQRGSGSRQSPSYGRHGSGSGRSS 1622
Query: 66 AGPGPGLGRAEAKGRNRRPPIGGAS 90
+ G G E+ G G S
Sbjct: 1623 SSGQHGSGLGESSGFGHHESSSGQS 1647
Score = 26.9 bits (58), Expect = 3.5
Identities = 22/85 (25%), Positives = 32/85 (37%), Gaps = 8/85 (9%)
Query: 13 SSAAASPSQASRGEGT-------RMRCRSARSPSSHAAGGGGARRTKREERGHRGGGPGA 65
+S+ S S G G+ R S +SP H G G+R++ R G G +
Sbjct: 2504 ASSGQSSSHGQHGSGSSQSSGYGRQGSGSGQSPG-HGQRGSGSRQSPSYGRHGSGSGRSS 2562
Query: 66 AGPGPGLGRAEAKGRNRRPPIGGAS 90
+ G G E+ G G S
Sbjct: 2563 SSGQHGSGLGESSGFGHHESSSGQS 2587
Score = 26.6 bits (57), Expect = 4.5
Identities = 20/75 (26%), Positives = 31/75 (41%), Gaps = 8/75 (10%)
Query: 13 SSAAASPSQASRGEGTRMRCRSAR--SPSSHAAGGGGARRTKREERGH--RGGG----PG 64
S++ + S G +R + S S H++G G + GH RG G P
Sbjct: 379 STSGQASSSGQHGSSSRQSSSYGQHESASRHSSGRGQHSSGSGQSPGHGQRGSGSGQSPS 438
Query: 65 AAGPGPGLGRAEAKG 79
+ G G GR+ + G
Sbjct: 439 SGQHGTGFGRSSSSG 453
>gi|239756517 PREDICTED: hypothetical protein [Homo sapiens]
Length = 316
Score = 34.7 bits (78), Expect = 0.017
Identities = 24/59 (40%), Positives = 28/59 (47%), Gaps = 10/59 (16%)
Query: 39 SSHAAGGG---GARRTKREERGHRGGGPGAAGP-------GPGLGRAEAKGRNRRPPIG 87
SS + GGG G+ + R RG GPGAAGP G GR +GR R P G
Sbjct: 57 SSPSLGGGPAAGSAILRAGSRSPRGAGPGAAGPRAAGRGGAGGGGRCCTRGRGRFPCAG 115
>gi|239751026 PREDICTED: hypothetical protein XP_002347678 [Homo
sapiens]
Length = 304
Score = 34.7 bits (78), Expect = 0.017
Identities = 24/59 (40%), Positives = 28/59 (47%), Gaps = 10/59 (16%)
Query: 39 SSHAAGGG---GARRTKREERGHRGGGPGAAGP-------GPGLGRAEAKGRNRRPPIG 87
SS + GGG G+ + R RG GPGAAGP G GR +GR R P G
Sbjct: 57 SSPSLGGGPAAGSAILRAGSRSPRGAGPGAAGPRAAGRGGAGGGGRCCTRGRGRFPCAG 115
>gi|239747516 PREDICTED: hypothetical protein [Homo sapiens]
Length = 209
Score = 34.7 bits (78), Expect = 0.017
Identities = 24/61 (39%), Positives = 29/61 (47%), Gaps = 9/61 (14%)
Query: 32 CRSARSPS-----SHAAGGGGARRTKREER----GHRGGGPGAAGPGPGLGRAEAKGRNR 82
CRS+ S S A GGGG+R +R G GGG G G G G G +E +G
Sbjct: 139 CRSSLSSSRWEAGGGAGGGGGSRGPAAWDRIRVNGGLGGGGGCRGGGDGRGDSELRGAAA 198
Query: 83 R 83
R
Sbjct: 199 R 199
>gi|239745455 PREDICTED: hypothetical protein XP_002343496 [Homo
sapiens]
Length = 304
Score = 34.7 bits (78), Expect = 0.017
Identities = 24/59 (40%), Positives = 28/59 (47%), Gaps = 10/59 (16%)
Query: 39 SSHAAGGG---GARRTKREERGHRGGGPGAAGP-------GPGLGRAEAKGRNRRPPIG 87
SS + GGG G+ + R RG GPGAAGP G GR +GR R P G
Sbjct: 57 SSPSLGGGPAAGSAILRAGSRSPRGAGPGAAGPRAAGRGGAGGGGRCCTRGRGRFPCAG 115
>gi|239741486 PREDICTED: hypothetical protein XP_002342213 [Homo
sapiens]
Length = 233
Score = 34.7 bits (78), Expect = 0.017
Identities = 28/73 (38%), Positives = 31/73 (42%), Gaps = 9/73 (12%)
Query: 5 GTGTGTCFSSAAASPSQASRGEGTRMRCR--SARSPSSHAAGGGGARRTKREERGHRGGG 62
GTG G A S R G+R R +A SP +HAAG A R RG G
Sbjct: 150 GTGRGKLAHRVAPSKEPPERACGSRGRSTGWAASSPKTHAAGQAPA-----AARSGRGAG 204
Query: 63 PGAAGPG--PGLG 73
P G G GLG
Sbjct: 205 PAREGSGAPSGLG 217
>gi|239741394 PREDICTED: hypothetical protein XP_002342192 [Homo
sapiens]
Length = 209
Score = 34.7 bits (78), Expect = 0.017
Identities = 24/61 (39%), Positives = 29/61 (47%), Gaps = 9/61 (14%)
Query: 32 CRSARSPS-----SHAAGGGGARRTKREER----GHRGGGPGAAGPGPGLGRAEAKGRNR 82
CRS+ S S A GGGG+R +R G GGG G G G G G +E +G
Sbjct: 139 CRSSLSSSRWEAGGGAGGGGGSRGPAAWDRIRVNGGLGGGGGCRGGGDGRGDSELRGAAA 198
Query: 83 R 83
R
Sbjct: 199 R 199
>gi|62422554 p21-activated kinase 4 isoform 1 [Homo sapiens]
Length = 591
Score = 34.7 bits (78), Expect = 0.017
Identities = 23/71 (32%), Positives = 30/71 (42%), Gaps = 3/71 (4%)
Query: 17 ASPSQASRGEGTRMRCRSARSPSSHAAGGGGARRTKREERGHRG---GGPGAAGPGPGLG 73
A S+A G G R R + P S G GG + + R++R G G P AG G
Sbjct: 139 AGHSEAGGGSGDRRRAGPEKRPKSSREGSGGPQESSRDKRPLSGPDVGTPQPAGLASGAK 198
Query: 74 RAEAKGRNRRP 84
A + N P
Sbjct: 199 LAAGRPFNTYP 209
Score = 30.4 bits (67), Expect = 0.31
Identities = 21/86 (24%), Positives = 33/86 (38%), Gaps = 7/86 (8%)
Query: 2 APPGTGTGTCFSSAAASPSQASRGEGTRMRCRSARSPSSHAAGGGGARRTKREERGHRGG 61
+PP + P+ +RG + R + S A GG G RR E+ +
Sbjct: 104 SPPPPARARQENGMPEEPATTARGGPGKAGSRGRFAGHSEAGGGSGDRRRAGPEKRPKSS 163
Query: 62 GPGAAGPGPGLGRAEAKGRNRRPPIG 87
G+ GP + R++RP G
Sbjct: 164 REGSGGP-------QESSRDKRPLSG 182
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.313 0.132 0.423
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,069,582
Number of Sequences: 37866
Number of extensions: 370016
Number of successful extensions: 4747
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 318
Number of HSP's successfully gapped in prelim test: 538
Number of HSP's that attempted gapping in prelim test: 3237
Number of HSP's gapped (non-prelim): 1770
length of query: 102
length of database: 18,247,518
effective HSP length: 73
effective length of query: 29
effective length of database: 15,483,300
effective search space: 449015700
effective search space used: 449015700
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.