Guide to the Human Genome
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Search of human proteins with 239755513

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|239755513 PREDICTED: hypothetical protein [Homo sapiens]
         (146 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|239755513 PREDICTED: hypothetical protein [Homo sapiens]           306   5e-84
gi|239750015 PREDICTED: hypothetical protein XP_002347237 [Homo ...   306   5e-84
gi|239744328 PREDICTED: hypothetical protein XP_002343098 [Homo ...   306   5e-84
gi|71043876 undifferentiated embryonic cell transcription factor...    33   0.066
gi|4502175 apical protein of Xenopus-like [Homo sapiens]               32   0.19 
gi|164698460 mannosidase, endo-alpha-like isoform 3 [Homo sapiens]     32   0.25 
gi|72534766 mannosidase, endo-alpha-like isoform 1 [Homo sapiens]      32   0.25 
gi|150170670 piccolo isoform 2 [Homo sapiens]                          31   0.43 
gi|150378539 piccolo isoform 1 [Homo sapiens]                          31   0.43 
gi|8567388 period 3 [Homo sapiens]                                     30   0.56 
gi|117938759 GNAS complex locus XLas [Homo sapiens]                    30   0.56 
gi|169209171 PREDICTED: hypothetical protein [Homo sapiens]            30   0.56 
gi|19924099 synapsin I isoform Ia [Homo sapiens]                       30   0.56 
gi|19924097 synapsin I isoform Ib [Homo sapiens]                       30   0.56 
gi|116235456 ring finger protein 214 [Homo sapiens]                    30   0.56 
gi|116235451 ring finger protein 214 [Homo sapiens]                    30   0.56 
gi|239747614 PREDICTED: similar to Putative uncharacterized prot...    30   0.73 
gi|110832843 TBP-associated factor 4 [Homo sapiens]                    30   0.95 
gi|46275820 tetratricopeptide repeat domain 9B [Homo sapiens]          30   0.95 
gi|214832074 LIM domain only 2 isoform 1 [Homo sapiens]                29   1.2  
gi|206725452 leukocyte receptor cluster (LRC) member 9 [Homo sap...    29   1.2  
gi|239755450 PREDICTED: hypothetical protein [Homo sapiens]            29   1.6  
gi|239749929 PREDICTED: hypothetical protein [Homo sapiens]            29   1.6  
gi|239744238 PREDICTED: hypothetical protein [Homo sapiens]            29   1.6  
gi|32964830 collagen, type VIII, alpha 2 [Homo sapiens]                29   1.6  
gi|145199237 transcription elongation factor B polypeptide 3 bin...    29   1.6  
gi|61175248 spermidine/spermine N1-acetyl transferase-like 1 [Ho...    29   1.6  
gi|209862845 nuclear factor of activated T-cells, cytoplasmic, c...    28   2.1  
gi|27886563 nuclear factor of activated T-cells, cytoplasmic, ca...    28   2.1  
gi|169215211 PREDICTED: hypothetical protein [Homo sapiens]            28   2.1  

>gi|239755513 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 146

 Score =  306 bits (783), Expect = 5e-84
 Identities = 146/146 (100%), Positives = 146/146 (100%)

Query: 1   MVGKSKTGAEEAQDGSKCPFGPQKQKAGLERGSMQLPLLHHLVPGQALSPTSRRKKTERG 60
           MVGKSKTGAEEAQDGSKCPFGPQKQKAGLERGSMQLPLLHHLVPGQALSPTSRRKKTERG
Sbjct: 1   MVGKSKTGAEEAQDGSKCPFGPQKQKAGLERGSMQLPLLHHLVPGQALSPTSRRKKTERG 60

Query: 61  NCEQMGFWVPSGLHKPSVMLPACTSAPAWPPDIPARPGLGAGDKPREGPSPTKVDELGVS 120
           NCEQMGFWVPSGLHKPSVMLPACTSAPAWPPDIPARPGLGAGDKPREGPSPTKVDELGVS
Sbjct: 61  NCEQMGFWVPSGLHKPSVMLPACTSAPAWPPDIPARPGLGAGDKPREGPSPTKVDELGVS 120

Query: 121 QLSLCLKSQNANSVCELNLPVTAGVG 146
           QLSLCLKSQNANSVCELNLPVTAGVG
Sbjct: 121 QLSLCLKSQNANSVCELNLPVTAGVG 146


>gi|239750015 PREDICTED: hypothetical protein XP_002347237 [Homo
           sapiens]
          Length = 146

 Score =  306 bits (783), Expect = 5e-84
 Identities = 146/146 (100%), Positives = 146/146 (100%)

Query: 1   MVGKSKTGAEEAQDGSKCPFGPQKQKAGLERGSMQLPLLHHLVPGQALSPTSRRKKTERG 60
           MVGKSKTGAEEAQDGSKCPFGPQKQKAGLERGSMQLPLLHHLVPGQALSPTSRRKKTERG
Sbjct: 1   MVGKSKTGAEEAQDGSKCPFGPQKQKAGLERGSMQLPLLHHLVPGQALSPTSRRKKTERG 60

Query: 61  NCEQMGFWVPSGLHKPSVMLPACTSAPAWPPDIPARPGLGAGDKPREGPSPTKVDELGVS 120
           NCEQMGFWVPSGLHKPSVMLPACTSAPAWPPDIPARPGLGAGDKPREGPSPTKVDELGVS
Sbjct: 61  NCEQMGFWVPSGLHKPSVMLPACTSAPAWPPDIPARPGLGAGDKPREGPSPTKVDELGVS 120

Query: 121 QLSLCLKSQNANSVCELNLPVTAGVG 146
           QLSLCLKSQNANSVCELNLPVTAGVG
Sbjct: 121 QLSLCLKSQNANSVCELNLPVTAGVG 146


>gi|239744328 PREDICTED: hypothetical protein XP_002343098 [Homo
           sapiens]
          Length = 146

 Score =  306 bits (783), Expect = 5e-84
 Identities = 146/146 (100%), Positives = 146/146 (100%)

Query: 1   MVGKSKTGAEEAQDGSKCPFGPQKQKAGLERGSMQLPLLHHLVPGQALSPTSRRKKTERG 60
           MVGKSKTGAEEAQDGSKCPFGPQKQKAGLERGSMQLPLLHHLVPGQALSPTSRRKKTERG
Sbjct: 1   MVGKSKTGAEEAQDGSKCPFGPQKQKAGLERGSMQLPLLHHLVPGQALSPTSRRKKTERG 60

Query: 61  NCEQMGFWVPSGLHKPSVMLPACTSAPAWPPDIPARPGLGAGDKPREGPSPTKVDELGVS 120
           NCEQMGFWVPSGLHKPSVMLPACTSAPAWPPDIPARPGLGAGDKPREGPSPTKVDELGVS
Sbjct: 61  NCEQMGFWVPSGLHKPSVMLPACTSAPAWPPDIPARPGLGAGDKPREGPSPTKVDELGVS 120

Query: 121 QLSLCLKSQNANSVCELNLPVTAGVG 146
           QLSLCLKSQNANSVCELNLPVTAGVG
Sbjct: 121 QLSLCLKSQNANSVCELNLPVTAGVG 146


>gi|71043876 undifferentiated embryonic cell transcription factor 1
           [Homo sapiens]
          Length = 341

 Score = 33.5 bits (75), Expect = 0.066
 Identities = 16/45 (35%), Positives = 22/45 (48%)

Query: 75  KPSVMLPACTSAPAWPPDIPARPGLGAGDKPREGPSPTKVDELGV 119
           +P  + P    +PA P   P  PG   G  PR   SP+ + ELG+
Sbjct: 7   RPPPLAPPAPPSPASPDPEPRTPGDAPGTPPRRPASPSALGELGL 51


>gi|4502175 apical protein of Xenopus-like [Homo sapiens]
          Length = 1616

 Score = 32.0 bits (71), Expect = 0.19
 Identities = 40/137 (29%), Positives = 60/137 (43%), Gaps = 33/137 (24%)

Query: 7   TGAEEAQDGSKCPFGPQKQKAGLERGSMQLPLL----HHLVPGQA--LSPTSRRKKTERG 60
           T A EA+DG+       + +AGL  G+ + PL      HL   QA  L  TS +++    
Sbjct: 651 TAAGEAEDGTG------RWRAGLGGGTQEGPLAGTYKDHLKEAQARVLRATSFKRRDLDP 704

Query: 61  NC---------EQMG-------FWVPSGLHKPSVMLPACTSAPAWPPDIPARPGLGAGDK 104
           N           +MG       FW  +GL +P    P+ TS    PP I  R    A  K
Sbjct: 705 NPGDLYPESLEHRMGDPDTVPHFW-EAGLAQP----PSSTSGGPHPPRIGGRRRFTAEQK 759

Query: 105 PREGPSPTKVDELGVSQ 121
            +    P K++E+G+++
Sbjct: 760 LKSYSEPEKMNEVGLTR 776


>gi|164698460 mannosidase, endo-alpha-like isoform 3 [Homo sapiens]
          Length = 457

 Score = 31.6 bits (70), Expect = 0.25
 Identities = 25/75 (33%), Positives = 30/75 (40%), Gaps = 18/75 (24%)

Query: 42  LVPGQALSPTSRRKKTERGNCEQMGFWVPSGLHKPSVMLPACTSAPAWPPDIP--ARPGL 99
           L PG  L+P  RR               P G   P+   PA  +AP  PP  P  A PG 
Sbjct: 38  LGPGLELAPFERR---------------PEGAPAPAARAPAAPAAPPPPPPPPRTADPGG 82

Query: 100 GAGDKPREG-PSPTK 113
             G  P E  P+P +
Sbjct: 83  SPGPAPAEAEPAPVQ 97


>gi|72534766 mannosidase, endo-alpha-like isoform 1 [Homo sapiens]
          Length = 250

 Score = 31.6 bits (70), Expect = 0.25
 Identities = 25/75 (33%), Positives = 30/75 (40%), Gaps = 18/75 (24%)

Query: 42  LVPGQALSPTSRRKKTERGNCEQMGFWVPSGLHKPSVMLPACTSAPAWPPDIP--ARPGL 99
           L PG  L+P  RR               P G   P+   PA  +AP  PP  P  A PG 
Sbjct: 38  LGPGLELAPFERR---------------PEGAPAPAARAPAAPAAPPPPPPPPRTADPGG 82

Query: 100 GAGDKPREG-PSPTK 113
             G  P E  P+P +
Sbjct: 83  SPGPAPAEAEPAPVQ 97


>gi|150170670 piccolo isoform 2 [Homo sapiens]
          Length = 4935

 Score = 30.8 bits (68), Expect = 0.43
 Identities = 27/97 (27%), Positives = 39/97 (40%), Gaps = 14/97 (14%)

Query: 22  PQKQKAGLERG--------SMQLPLLHHLVPGQALSPTSRRKKTERGNCEQMGFWVPSGL 73
           PQ ++A + RG        S   P +    PG+  +     +K++ G  +      PSGL
Sbjct: 281 PQTKQADIVRGESVKPSLPSPSKPPIQQPTPGKPPAQQPGHEKSQPGPAKPPA--QPSGL 338

Query: 74  HKPSVMLPACTSAPAWPPDI---PARPGLGAGDKPRE 107
            KP    P     P  PP     PA+P LG    P +
Sbjct: 339 TKPLAQQPGTVKPPVQPPGTTKPPAQP-LGPAKPPAQ 374


>gi|150378539 piccolo isoform 1 [Homo sapiens]
          Length = 5142

 Score = 30.8 bits (68), Expect = 0.43
 Identities = 27/97 (27%), Positives = 39/97 (40%), Gaps = 14/97 (14%)

Query: 22  PQKQKAGLERG--------SMQLPLLHHLVPGQALSPTSRRKKTERGNCEQMGFWVPSGL 73
           PQ ++A + RG        S   P +    PG+  +     +K++ G  +      PSGL
Sbjct: 281 PQTKQADIVRGESVKPSLPSPSKPPIQQPTPGKPPAQQPGHEKSQPGPAKPPA--QPSGL 338

Query: 74  HKPSVMLPACTSAPAWPPDI---PARPGLGAGDKPRE 107
            KP    P     P  PP     PA+P LG    P +
Sbjct: 339 TKPLAQQPGTVKPPVQPPGTTKPPAQP-LGPAKPPAQ 374


>gi|8567388 period 3 [Homo sapiens]
          Length = 1201

 Score = 30.4 bits (67), Expect = 0.56
 Identities = 30/113 (26%), Positives = 39/113 (34%), Gaps = 12/113 (10%)

Query: 34   MQLPLLHHLVPGQALSPTSRRKKTERGNCEQMGFWVPSGLHKPSVMLPACTSA------P 87
            +QL LL   +P  + SP   R+ T    C Q  + V    +  S   PA T A      P
Sbjct: 925  LQLNLLQEEMPRPSESPDQMRRNT----CPQTEYCVTG--NNGSESSPATTGALSTGSPP 978

Query: 88   AWPPDIPARPGLGAGDKPREGPSPTKVDELGVSQLSLCLKSQNANSVCELNLP 140
               P  P    L  G  P + PS      L      +   S    S   + LP
Sbjct: 979  RENPSHPTASALSTGSPPMKNPSHPTASALSTGSPPMKNPSHPTASTLSMGLP 1031


>gi|117938759 GNAS complex locus XLas [Homo sapiens]
          Length = 1037

 Score = 30.4 bits (67), Expect = 0.56
 Identities = 27/71 (38%), Positives = 32/71 (45%), Gaps = 19/71 (26%)

Query: 63  EQMGFWVPSGLHK------PSVMLPACTSAPAWPPDIPARPGLGAGDKPREGPSPTKVD- 115
           EQ GF  PSG+H       P++M P   S         ARPGLG    P E   P + D 
Sbjct: 119 EQPGF--PSGVHAGLEAFGPALMEPGAFSG--------ARPGLGGYSPPPEEAMPFEFDQ 168

Query: 116 --ELGVSQLSL 124
             + G SQL L
Sbjct: 169 PAQRGCSQLLL 179


>gi|169209171 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 169

 Score = 30.4 bits (67), Expect = 0.56
 Identities = 20/78 (25%), Positives = 31/78 (39%), Gaps = 1/78 (1%)

Query: 32  GSMQLPLLHHLVPGQALSPTSRRKKTERGNCEQMGFWVPSGLHKPSVMLPACTSAPAWPP 91
           G+ + P+   L P   L P   R++  R    ++  WV S   + +  LP     P  PP
Sbjct: 33  GAPRPPVRSDLAPSDRLLPVPGRRRCARAGLWKI-VWVNSQASRLNARLPPPPLHPLLPP 91

Query: 92  DIPARPGLGAGDKPREGP 109
            +   P       P+ GP
Sbjct: 92  PLAFNPTRHPHSAPQPGP 109


>gi|19924099 synapsin I isoform Ia [Homo sapiens]
          Length = 705

 Score = 30.4 bits (67), Expect = 0.56
 Identities = 28/92 (30%), Positives = 38/92 (41%), Gaps = 7/92 (7%)

Query: 16  SKCPFGPQKQKAGLERGSMQLPLLHHLVPG-QALSPTSRRKKTERGNCEQMGFWVPSGLH 74
           S+ P GP  Q+    +G    P      PG Q   P  +++   +G     G   P+G  
Sbjct: 449 SQQPAGPPAQQRPPPQGGPPQP-----GPGPQRQGPPLQQRPPPQGQQHLSGLGPPAGSP 503

Query: 75  KPSVMLPACTSAPAWPPDIPARPGLGAGDKPR 106
            P   LP+ TSAP  P    A P  G G + R
Sbjct: 504 LPQ-RLPSPTSAPQQPASQAAPPTQGQGRQSR 534


>gi|19924097 synapsin I isoform Ib [Homo sapiens]
          Length = 669

 Score = 30.4 bits (67), Expect = 0.56
 Identities = 28/92 (30%), Positives = 38/92 (41%), Gaps = 7/92 (7%)

Query: 16  SKCPFGPQKQKAGLERGSMQLPLLHHLVPG-QALSPTSRRKKTERGNCEQMGFWVPSGLH 74
           S+ P GP  Q+    +G    P      PG Q   P  +++   +G     G   P+G  
Sbjct: 449 SQQPAGPPAQQRPPPQGGPPQP-----GPGPQRQGPPLQQRPPPQGQQHLSGLGPPAGSP 503

Query: 75  KPSVMLPACTSAPAWPPDIPARPGLGAGDKPR 106
            P   LP+ TSAP  P    A P  G G + R
Sbjct: 504 LPQ-RLPSPTSAPQQPASQAAPPTQGQGRQSR 534


>gi|116235456 ring finger protein 214 [Homo sapiens]
          Length = 703

 Score = 30.4 bits (67), Expect = 0.56
 Identities = 33/121 (27%), Positives = 49/121 (40%), Gaps = 20/121 (16%)

Query: 33  SMQLPLLHHLVPGQALSPTSRRKKTERGNCEQMGFWV-PSGLHKPSVMLPACTSAPAWPP 91
           S+  P+L+  +  Q   P+S    +   N   +G  V P G H P    PA +       
Sbjct: 483 SLSFPILNPAL-SQPSQPSSPLPGSHGRNSPGLGSLVSPHGPHMP----PAAS------- 530

Query: 92  DIPARPGLGAGDKPREGPSPTKVDELG------VSQLSLCLKSQNANSVCELNLPVTAGV 145
            IP  PGLG      E P P  VD+L       +++   C K+Q  N + ++    T   
Sbjct: 531 -IPPPPGLGGVKASAETPRPQPVDKLEKILEKLLTRFPQCNKAQMTNILQQIKTARTTMA 589

Query: 146 G 146
           G
Sbjct: 590 G 590


>gi|116235451 ring finger protein 214 [Homo sapiens]
          Length = 703

 Score = 30.4 bits (67), Expect = 0.56
 Identities = 33/121 (27%), Positives = 49/121 (40%), Gaps = 20/121 (16%)

Query: 33  SMQLPLLHHLVPGQALSPTSRRKKTERGNCEQMGFWV-PSGLHKPSVMLPACTSAPAWPP 91
           S+  P+L+  +  Q   P+S    +   N   +G  V P G H P    PA +       
Sbjct: 483 SLSFPILNPAL-SQPSQPSSPLPGSHGRNSPGLGSLVSPHGPHMP----PAAS------- 530

Query: 92  DIPARPGLGAGDKPREGPSPTKVDELG------VSQLSLCLKSQNANSVCELNLPVTAGV 145
            IP  PGLG      E P P  VD+L       +++   C K+Q  N + ++    T   
Sbjct: 531 -IPPPPGLGGVKASAETPRPQPVDKLEKILEKLLTRFPQCNKAQMTNILQQIKTARTTMA 589

Query: 146 G 146
           G
Sbjct: 590 G 590


>gi|239747614 PREDICTED: similar to Putative uncharacterized protein
           FLJ44672 [Homo sapiens]
          Length = 259

 Score = 30.0 bits (66), Expect = 0.73
 Identities = 13/29 (44%), Positives = 17/29 (58%)

Query: 72  GLHKPSVMLPACTSAPAWPPDIPARPGLG 100
           GL +P+  LPA +  PA PP   +RP  G
Sbjct: 25  GLSRPTCSLPASSPGPALPPGCVSRPDSG 53


>gi|110832843 TBP-associated factor 4 [Homo sapiens]
          Length = 1085

 Score = 29.6 bits (65), Expect = 0.95
 Identities = 18/43 (41%), Positives = 21/43 (48%), Gaps = 2/43 (4%)

Query: 81  PACTSAPAWPPDIPAR--PGLGAGDKPREGPSPTKVDELGVSQ 121
           PA  + PA P  + AR  PG G G  P  GP P K    G +Q
Sbjct: 154 PAGPAKPAGPAALAARAGPGPGPGPGPGPGPGPGKPAGPGAAQ 196



 Score = 26.6 bits (57), Expect = 8.0
 Identities = 16/37 (43%), Positives = 19/37 (51%), Gaps = 2/37 (5%)

Query: 84  TSAPAWPPDIPARPGLGAGDKPREGPSPTKVDELGVS 120
           T+APA PP   A+ G  AG  P   P+P      GVS
Sbjct: 292 TAAPAVPPPAAAQNGGSAGAAP--APAPAAGGPAGVS 326


>gi|46275820 tetratricopeptide repeat domain 9B [Homo sapiens]
          Length = 239

 Score = 29.6 bits (65), Expect = 0.95
 Identities = 18/54 (33%), Positives = 22/54 (40%), Gaps = 5/54 (9%)

Query: 72  GLHKPSVMLPACTSAPAWPPDIPARPGLGAGD-----KPREGPSPTKVDELGVS 120
           G   P +ML A    P  PP   + PG G G        R GP+P     LG +
Sbjct: 4   GALSPVLMLSAAPEPPPRPPPALSPPGSGPGSGSRHGSARPGPTPEPSGSLGAA 57


>gi|214832074 LIM domain only 2 isoform 1 [Homo sapiens]
          Length = 227

 Score = 29.3 bits (64), Expect = 1.2
 Identities = 25/78 (32%), Positives = 31/78 (39%), Gaps = 5/78 (6%)

Query: 45  GQALSPTSRRKKTERGNCEQMGFW----VPSGLHKPSVMLPACT-SAPAWPPDIPARPGL 99
           G A SP  RR K  R +    G       P G+  P+   P  T  AP  P   P  P  
Sbjct: 12  GGASSPAERRSKRRRRSGGDGGGGGGARAPEGVRAPAAGQPRATKGAPPPPGTPPPSPMS 71

Query: 100 GAGDKPREGPSPTKVDEL 117
            A ++    PS   VDE+
Sbjct: 72  SAIERKSLDPSEEPVDEV 89


>gi|206725452 leukocyte receptor cluster (LRC) member 9 [Homo
           sapiens]
          Length = 501

 Score = 29.3 bits (64), Expect = 1.2
 Identities = 21/64 (32%), Positives = 28/64 (43%), Gaps = 3/64 (4%)

Query: 43  VPGQALSPTSRRKKTERGNCEQMGFWVPSGLHKPSVMLPACTSAPAWPPDIPARPGLGAG 102
           V  +AL PT+  + T  G  E     VP G  + +    A     AWP D  AR  + A 
Sbjct: 259 VTEEALKPTAATRTTLLGGKEAQALGVPGGSAETT---EAEWGPAAWPEDKRARLSVAAP 315

Query: 103 DKPR 106
            +PR
Sbjct: 316 CQPR 319


>gi|239755450 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 153

 Score = 28.9 bits (63), Expect = 1.6
 Identities = 13/31 (41%), Positives = 15/31 (48%)

Query: 81  PACTSAPAWPPDIPARPGLGAGDKPREGPSP 111
           PA  S   WP  +P RPG   GD+    P P
Sbjct: 60  PARPSHLLWPKRLPGRPGRAPGDRRAALPPP 90


>gi|239749929 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 153

 Score = 28.9 bits (63), Expect = 1.6
 Identities = 13/31 (41%), Positives = 15/31 (48%)

Query: 81  PACTSAPAWPPDIPARPGLGAGDKPREGPSP 111
           PA  S   WP  +P RPG   GD+    P P
Sbjct: 60  PARPSHLLWPKRLPGRPGRAPGDRRAALPPP 90


>gi|239744238 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 153

 Score = 28.9 bits (63), Expect = 1.6
 Identities = 13/31 (41%), Positives = 15/31 (48%)

Query: 81  PACTSAPAWPPDIPARPGLGAGDKPREGPSP 111
           PA  S   WP  +P RPG   GD+    P P
Sbjct: 60  PARPSHLLWPKRLPGRPGRAPGDRRAALPPP 90


>gi|32964830 collagen, type VIII, alpha 2 [Homo sapiens]
          Length = 703

 Score = 28.9 bits (63), Expect = 1.6
 Identities = 15/45 (33%), Positives = 21/45 (46%), Gaps = 4/45 (8%)

Query: 84  TSAPAWPPDIPARPGL----GAGDKPREGPSPTKVDELGVSQLSL 124
           T+ P  PP +P  PG+    G    P    +P   DE G++ L L
Sbjct: 502 TAGPTGPPGVPGSPGITGPPGPPGPPGPPGAPGAFDETGIAGLHL 546


>gi|145199237 transcription elongation factor B polypeptide 3
           binding protein 1 [Homo sapiens]
          Length = 1221

 Score = 28.9 bits (63), Expect = 1.6
 Identities = 36/113 (31%), Positives = 40/113 (35%), Gaps = 27/113 (23%)

Query: 4   KSKTGAEEAQDGSKCPFGPQKQKAGLERGSMQLPLLHHLVPGQALSPTSRRKKTERGNCE 63
           K KTGA  A        G  K K       ++ P      P QA SP   R+K ER    
Sbjct: 378 KKKTGAPPAPSCKDGAQGKDKTKDKGRGRPVEKPRADKKGP-QASSP---RRKAER---- 429

Query: 64  QMGFWVPSGLHK-PSVMLPACTSAPAWPPDIPARPGLGAGDKPREGPSPTKVD 115
                 P G  K PS   P  TS            G G  D+P   PSPT  D
Sbjct: 430 ------PEGTKKKPSSATPVATS------------GKGRPDRPARRPSPTSGD 464


>gi|61175248 spermidine/spermine N1-acetyl transferase-like 1 [Homo
           sapiens]
          Length = 445

 Score = 28.9 bits (63), Expect = 1.6
 Identities = 32/133 (24%), Positives = 50/133 (37%), Gaps = 25/133 (18%)

Query: 2   VGKSKTGAEEAQDGSKCPFGPQKQKAGLERGSMQLPLLHHLVPGQALSPTSRRKKTERGN 61
           +G S+ G  +       P  P K   G+ +  M  P +   VP Q      R+  T + +
Sbjct: 222 IGMSQPGTWQTGLSQPVPRQPNKSPPGMWQRGMWQPGMSQQVPSQL---GMRQPGTSQSS 278

Query: 62  CEQMGFWVPSGLHKPSVMLPACTSAPAWPPDIPARPGLGAGD----------KPREGPSP 111
             Q G   P G  +P +          W P  P++PGL   D            + G S 
Sbjct: 279 KNQTGMSHP-GRGQPGI----------WEPG-PSQPGLSQQDLNQLVLSQPGLSQPGRSQ 326

Query: 112 TKVDELGVSQLSL 124
             V ++G+ Q S+
Sbjct: 327 PSVSQMGMRQTSM 339


>gi|209862845 nuclear factor of activated T-cells, cytoplasmic,
           calcineurin-dependent 4 isoform 1 [Homo sapiens]
          Length = 964

 Score = 28.5 bits (62), Expect = 2.1
 Identities = 16/39 (41%), Positives = 20/39 (51%), Gaps = 7/39 (17%)

Query: 77  SVMLPACTSAPAWPPDIPARPGLGAGDKPREGPSPTKVD 115
           S+ LP    AP  PP +PA P       P EGP P++ D
Sbjct: 863 SLGLPFSPPAPFRPPPLPASP-------PLEGPFPSQSD 894


>gi|27886563 nuclear factor of activated T-cells, cytoplasmic,
           calcineurin-dependent 4 isoform 2 [Homo sapiens]
          Length = 902

 Score = 28.5 bits (62), Expect = 2.1
 Identities = 16/39 (41%), Positives = 20/39 (51%), Gaps = 7/39 (17%)

Query: 77  SVMLPACTSAPAWPPDIPARPGLGAGDKPREGPSPTKVD 115
           S+ LP    AP  PP +PA P       P EGP P++ D
Sbjct: 800 SLGLPFSPPAPFRPPPLPASP-------PLEGPFPSQSD 831


>gi|169215211 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 136

 Score = 28.5 bits (62), Expect = 2.1
 Identities = 14/47 (29%), Positives = 21/47 (44%)

Query: 87  PAWPPDIPARPGLGAGDKPREGPSPTKVDELGVSQLSLCLKSQNANS 133
           P  PP  P R G G GD    G +   + + G +  + C  S+ A +
Sbjct: 5   PVPPPSQPGRWGAGTGDADEAGGATGSLCQRGAASANHCSGSEGAGT 51


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.312    0.132    0.410 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,205,487
Number of Sequences: 37866
Number of extensions: 400895
Number of successful extensions: 1475
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 68
Number of HSP's that attempted gapping in prelim test: 1400
Number of HSP's gapped (non-prelim): 147
length of query: 146
length of database: 18,247,518
effective HSP length: 92
effective length of query: 54
effective length of database: 14,763,846
effective search space: 797247684
effective search space used: 797247684
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 57 (26.6 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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