Guide to the Human Genome
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Name: LOC100292283 Sequence: fasta or formatted (146aa) NCBI GI: 239755513
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.5         11           1
 C cysteine            3.4          5           1
 D aspartate           2.7          4           1
 E glutamate           5.5          8           2
 F phenylalanine       1.4          2           1
 G glycine            11.6         17           1
 H histidine           2.1          3           2
 I isoleucine          0.7          1           1
 K lysine              7.5         11           2
 L leucine            10.3         15           2
 M methionine          2.7          4           1
 N asparagine          2.7          4           1
 P proline            11.6         17           2
 Q glutamine           5.5          8           1
 R arginine            4.1          6           2
 S serine              8.9         13           1
 T threonine           4.1          6           1
 V valine              6.2          9           1
 W tryptophan          1.4          2           1
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100289997          1.000   PREDICTED: hypothetical protein XP_002347237 
LOC100287017          1.000   PREDICTED: hypothetical protein XP_002343098 
UTF1                  0.028   undifferentiated embryonic cell transcription factor...
SHROOM2               0.025   apical protein of Xenopus-like 
MANEAL                0.025   mannosidase, endo-alpha-like isoform 3 
MANEAL                0.025   mannosidase, endo-alpha-like isoform 1 
PCLO                  0.021   piccolo isoform 2 
PCLO                  0.021   piccolo isoform 1 
PER3                  0.018   period 3 
GNAS                  0.018   GNAS complex locus XLas 
LOC728800             0.018   PREDICTED: hypothetical protein 
SYN1                  0.018   synapsin I isoform Ia 
SYN1                  0.018   synapsin I isoform Ib 
RNF214                0.018   ring finger protein 214 
RNF214                0.018   ring finger protein 214 
LOC731275             0.018   PREDICTED: similar to Putative uncharacterized prot...
TAF4                  0.018   TBP-associated factor 4 
TTC9B                 0.018   tetratricopeptide repeat domain 9B 
LMO2                  0.014   LIM domain only 2 isoform 1 
LENG9                 0.014   leukocyte receptor cluster (LRC) member 9 
LOC100128127          0.014   PREDICTED: hypothetical protein 
LOC100128127          0.014   PREDICTED: hypothetical protein 
LOC100128127          0.014   PREDICTED: hypothetical protein 
COL8A2                0.014   collagen, type VIII, alpha 2 
REXO1                 0.014   transcription elongation factor B polypeptide 3 bin...
SATL1                 0.014   spermidine/spermine N1-acetyl transferase-like 1 [Ho...
NFATC4                0.011   nuclear factor of activated T-cells, cytoplasmic, c...
NFATC4                0.011   nuclear factor of activated T-cells, cytoplasmic, ca...
LOC645446             0.011   PREDICTED: hypothetical protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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