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Search of human proteins with 239755412
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239755412 PREDICTED: hypothetical protein [Homo sapiens]
(305 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239755412 PREDICTED: hypothetical protein [Homo sapiens] 610 e-175
gi|239749957 PREDICTED: hypothetical protein [Homo sapiens] 37 0.028
gi|169169677 PREDICTED: hypothetical protein [Homo sapiens] 36 0.037
gi|4504347 alpha 1 globin [Homo sapiens] 32 0.54
gi|239756804 PREDICTED: hypothetical protein [Homo sapiens] 32 0.54
gi|239756274 PREDICTED: hypothetical protein [Homo sapiens] 32 0.54
gi|239754748 PREDICTED: hypothetical protein [Homo sapiens] 32 0.54
gi|239752975 PREDICTED: hypothetical protein [Homo sapiens] 32 0.54
gi|239751298 PREDICTED: hypothetical protein XP_002347799 [Homo ... 32 0.54
gi|239750811 PREDICTED: hypothetical protein XP_002347568 [Homo ... 32 0.54
gi|239747564 PREDICTED: hypothetical protein XP_002347660 [Homo ... 32 0.54
gi|239745795 PREDICTED: hypothetical protein XP_002343591 [Homo ... 32 0.54
gi|239745171 PREDICTED: hypothetical protein XP_002343379 [Homo ... 32 0.54
gi|239741438 PREDICTED: hypothetical protein XP_002342169 [Homo ... 32 0.54
gi|4504345 alpha 2 globin [Homo sapiens] 32 0.54
gi|169214874 PREDICTED: hypothetical protein [Homo sapiens] 32 0.70
gi|169215109 PREDICTED: hypothetical protein [Homo sapiens] 32 0.70
gi|28875797 small protein rich in arginine and glycine [Homo sap... 32 0.91
gi|41152110 adrenomedullin 2 precursor [Homo sapiens] 32 0.91
gi|169210434 PREDICTED: hypothetical protein [Homo sapiens] 32 0.91
gi|169214604 PREDICTED: hypothetical protein [Homo sapiens] 32 0.91
gi|239750574 PREDICTED: hypothetical protein [Homo sapiens] 31 1.6
gi|169205732 PREDICTED: hypothetical protein [Homo sapiens] 31 1.6
gi|239744552 PREDICTED: hypothetical protein [Homo sapiens] 31 1.6
gi|239751877 PREDICTED: hypothetical protein XP_002348035 [Homo ... 30 2.0
gi|134019487 chromatin modifying protein 1A isoform 1 [Homo sapi... 30 2.0
gi|109689720 acyl-Coenzyme A binding domain containing 5 isoform... 30 2.0
gi|203098629 acyl-Coenzyme A binding domain containing 5 isoform... 30 2.0
gi|116686120 periaxin isoform 2 [Homo sapiens] 30 2.0
gi|117414137 retinitis pigmentosa 1-like 1 [Homo sapiens] 30 2.0
>gi|239755412 PREDICTED: hypothetical protein [Homo sapiens]
Length = 305
Score = 610 bits (1572), Expect = e-175
Identities = 305/305 (100%), Positives = 305/305 (100%)
Query: 1 MGHRNGLGAAVGLDDVLDGAAADGAAGVQSLLEAQATGVAEAHVATCVDDRVHRVFIANG 60
MGHRNGLGAAVGLDDVLDGAAADGAAGVQSLLEAQATGVAEAHVATCVDDRVHRVFIANG
Sbjct: 1 MGHRNGLGAAVGLDDVLDGAAADGAAGVQSLLEAQATGVAEAHVATCVDDRVHRVFIANG 60
Query: 61 ALIAPLAQTWGHWRLGQAHWRIGGSYLPPAELPRGPELHVLSKGSDRRLPRALGEVGVEA 120
ALIAPLAQTWGHWRLGQAHWRIGGSYLPPAELPRGPELHVLSKGSDRRLPRALGEVGVEA
Sbjct: 61 ALIAPLAQTWGHWRLGQAHWRIGGSYLPPAELPRGPELHVLSKGSDRRLPRALGEVGVEA 120
Query: 121 GEQGSDGIPRSARIVEPDADLRDGPVQAEEHPKRLRGVHAQLHAGGRAIVAEVQLAVGVD 180
GEQGSDGIPRSARIVEPDADLRDGPVQAEEHPKRLRGVHAQLHAGGRAIVAEVQLAVGVD
Sbjct: 121 GEQGSDGIPRSARIVEPDADLRDGPVQAEEHPKRLRGVHAQLHAGGRAIVAEVQLAVGVD 180
Query: 181 HQAQDVAAVQGPGHAAHGPEFLAVHQGLRAEGQVGRPQRAGVARGDAERQRAGPRATRAR 240
HQAQDVAAVQGPGHAAHGPEFLAVHQGLRAEGQVGRPQRAGVARGDAERQRAGPRATRAR
Sbjct: 181 HQAQDVAAVQGPGHAAHGPEFLAVHQGLRAEGQVGRPQRAGVARGDAERQRAGPRATRAR 240
Query: 241 DLDEDGLGHAHGPAGEDERALVAPVLHARHRLLVEDADVRAGAQGVETQVAVELRRQRAA 300
DLDEDGLGHAHGPAGEDERALVAPVLHARHRLLVEDADVRAGAQGVETQVAVELRRQRAA
Sbjct: 241 DLDEDGLGHAHGPAGEDERALVAPVLHARHRLLVEDADVRAGAQGVETQVAVELRRQRAA 300
Query: 301 VLRVE 305
VLRVE
Sbjct: 301 VLRVE 305
>gi|239749957 PREDICTED: hypothetical protein [Homo sapiens]
Length = 707
Score = 36.6 bits (83), Expect = 0.028
Identities = 30/97 (30%), Positives = 39/97 (40%), Gaps = 3/97 (3%)
Query: 190 QGPGHAAHGPEFLAVHQGLRAEGQVGRPQRAGVARGDAERQRAGPRATRARDLDEDGLGH 249
Q PG HG E +VH L + +G G+ A R + G DL G+G
Sbjct: 371 QRPGLVKHGAERASVHFCLMSVSGLGGDADPGIGVHGAPRPQVGCLPQAHPDLGASGVGS 430
Query: 250 AHGP---AGEDERALVAPVLHARHRLLVEDADVRAGA 283
A GP + RA P R L E +R+GA
Sbjct: 431 AKGPCPVSSPPPRAWGLPFPRHPFRKLAEPLVLRSGA 467
>gi|169169677 PREDICTED: hypothetical protein [Homo sapiens]
Length = 167
Score = 36.2 bits (82), Expect = 0.037
Identities = 27/82 (32%), Positives = 37/82 (45%), Gaps = 16/82 (19%)
Query: 58 ANGALIAPLAQTWGHWRLGQAHW--RIGGSYLPPAELPRGPEL--------HVLSKGSDR 107
A+ L+ P WG LG+AH R+GG+ P E P GPE V ++G R
Sbjct: 47 ASDPLLPPAFPGWGERWLGRAHTLGRVGGAAGPTQEAPAGPEEVTPGTARGRVRAEGYGR 106
Query: 108 RLPRALGEVGVEAGEQGSDGIP 129
P+A G G Q + +P
Sbjct: 107 HQPKAPG------GRQAAPAMP 122
>gi|4504347 alpha 1 globin [Homo sapiens]
Length = 142
Score = 32.3 bits (72), Expect = 0.54
Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 6/62 (9%)
Query: 100 VLSKGSDRRLPRALGEVGVEAGEQGSDGIPR------SARIVEPDADLRDGPVQAEEHPK 153
VLS + A G+VG AGE G++ + R + + P DL G Q + H K
Sbjct: 2 VLSPADKTNVKAAWGKVGAHAGEYGAEALERMFLSFPTTKTYFPHFDLSHGSAQVKGHGK 61
Query: 154 RL 155
++
Sbjct: 62 KV 63
>gi|239756804 PREDICTED: hypothetical protein [Homo sapiens]
Length = 236
Score = 32.3 bits (72), Expect = 0.54
Identities = 39/123 (31%), Positives = 48/123 (39%), Gaps = 25/123 (20%)
Query: 158 VHAQLHAGGRAIVAEVQLAVGVDH-----QAQDVAAVQGPGHAAHGPEFLAVHQGLRA-- 210
V LH GR + A+ + A G H QAQ + +H + LA H G A
Sbjct: 91 VQGLLHPSGR-VAAQARAATGGVHPAGHPQAQGASGATAAARLSH--QLLAAHGGAAARQ 147
Query: 211 ---------EGQVG--RPQRAGVARG--DAERQRAGPRATRARDLDEDGLGHAHGPAGED 257
+G V RP G +G +AE Q PR R R G G G AGE
Sbjct: 148 LLLGAGRAVDGFVAQARPGPGGQQQGGHEAEGQHDRPRTGRGRGAL--GAGGERGRAGER 205
Query: 258 ERA 260
RA
Sbjct: 206 RRA 208
>gi|239756274 PREDICTED: hypothetical protein [Homo sapiens]
Length = 775
Score = 32.3 bits (72), Expect = 0.54
Identities = 33/108 (30%), Positives = 40/108 (37%), Gaps = 17/108 (15%)
Query: 193 GHAAHGPEFLAVHQGLRAEGQVGRPQRAGVARGDAERQRAGPRATRARDLDEDGLGHAHG 252
G AHG A H+ +RA G GVA G E AG R T DG H
Sbjct: 117 GRQAHGELAAAAHKAIRAVAHKGVCGEVGVAGGPVE---AGTRGTGI-----DGCPHLTA 168
Query: 253 PAGEDERA---------LVAPVLHARHRLLVEDADVRAGAQGVETQVA 291
A E RA + + + AR V D + GA+ T A
Sbjct: 169 SAREAGRAGAHEPILQVMASATVGARVTGTVADVEFTVGARESRTAAA 216
>gi|239754748 PREDICTED: hypothetical protein [Homo sapiens]
Length = 229
Score = 32.3 bits (72), Expect = 0.54
Identities = 26/89 (29%), Positives = 39/89 (43%), Gaps = 12/89 (13%)
Query: 76 GQAHWRIGGSYLPPAELPRGPELHVLSKGSDR--------RLPRALGEVGVE--AGEQGS 125
G W++G + G VL G+ R RLP L +G + + G
Sbjct: 53 GPRGWKVGRRPNLTCDREPGARPEVLLVGARRCTPACKPLRLPELLPTLGTQPRSPSTGP 112
Query: 126 DGIPRSARIVEPDADLRDGPVQAEEHPKR 154
D +PRS+R + P++ GP A+ HP R
Sbjct: 113 DRVPRSSRRLPPESRRPGGP--AKTHPAR 139
>gi|239752975 PREDICTED: hypothetical protein [Homo sapiens]
Length = 145
Score = 32.3 bits (72), Expect = 0.54
Identities = 21/64 (32%), Positives = 31/64 (48%), Gaps = 3/64 (4%)
Query: 234 PRATRAR---DLDEDGLGHAHGPAGEDERALVAPVLHARHRLLVEDADVRAGAQGVETQV 290
P +TR + DLDE G A G G AL + A+H L E DV GA+ + ++
Sbjct: 55 PPSTRCQGCSDLDEAGKAQAEGRVGRHGAALDLVPVQAQHLQLGEVHDVHHGAEAADGEL 114
Query: 291 AVEL 294
+ +
Sbjct: 115 CLTI 118
>gi|239751298 PREDICTED: hypothetical protein XP_002347799 [Homo
sapiens]
Length = 236
Score = 32.3 bits (72), Expect = 0.54
Identities = 39/123 (31%), Positives = 48/123 (39%), Gaps = 25/123 (20%)
Query: 158 VHAQLHAGGRAIVAEVQLAVGVDH-----QAQDVAAVQGPGHAAHGPEFLAVHQGLRA-- 210
V LH GR + A+ + A G H QAQ + +H + LA H G A
Sbjct: 91 VQGLLHPSGR-VAAQARAATGGVHPAGHPQAQGASGATAAARLSH--QLLAAHGGAAARQ 147
Query: 211 ---------EGQVG--RPQRAGVARG--DAERQRAGPRATRARDLDEDGLGHAHGPAGED 257
+G V RP G +G +AE Q PR R R G G G AGE
Sbjct: 148 LLLGAGRAVDGFVAQARPGPGGQQQGGHEAEGQHDRPRTGRGRGAL--GAGGERGRAGER 205
Query: 258 ERA 260
RA
Sbjct: 206 RRA 208
>gi|239750811 PREDICTED: hypothetical protein XP_002347568 [Homo
sapiens]
Length = 765
Score = 32.3 bits (72), Expect = 0.54
Identities = 33/108 (30%), Positives = 40/108 (37%), Gaps = 17/108 (15%)
Query: 193 GHAAHGPEFLAVHQGLRAEGQVGRPQRAGVARGDAERQRAGPRATRARDLDEDGLGHAHG 252
G AHG A H+ +RA G GVA G E AG R T DG H
Sbjct: 106 GRQAHGELAAAAHKAIRAVAHKGVCGEVGVAGGPVE---AGTRGTGI-----DGCPHLTA 157
Query: 253 PAGEDERA---------LVAPVLHARHRLLVEDADVRAGAQGVETQVA 291
A E RA + + + AR V D + GA+ T A
Sbjct: 158 SAREAGRAGAHEPILQVMASATVGARVTGTVADVEFTVGARESRTAAA 205
>gi|239747564 PREDICTED: hypothetical protein XP_002347660 [Homo
sapiens]
Length = 145
Score = 32.3 bits (72), Expect = 0.54
Identities = 21/64 (32%), Positives = 31/64 (48%), Gaps = 3/64 (4%)
Query: 234 PRATRAR---DLDEDGLGHAHGPAGEDERALVAPVLHARHRLLVEDADVRAGAQGVETQV 290
P +TR + DLDE G A G G AL + A+H L E DV GA+ + ++
Sbjct: 55 PPSTRCQGCSDLDEAGKAQAEGRVGRHGAALDLVPVQAQHLQLGEVHDVHHGAEAADGEL 114
Query: 291 AVEL 294
+ +
Sbjct: 115 CLTI 118
>gi|239745795 PREDICTED: hypothetical protein XP_002343591 [Homo
sapiens]
Length = 236
Score = 32.3 bits (72), Expect = 0.54
Identities = 39/123 (31%), Positives = 48/123 (39%), Gaps = 25/123 (20%)
Query: 158 VHAQLHAGGRAIVAEVQLAVGVDH-----QAQDVAAVQGPGHAAHGPEFLAVHQGLRA-- 210
V LH GR + A+ + A G H QAQ + +H + LA H G A
Sbjct: 91 VQGLLHPSGR-VAAQARAATGGVHPAGHPQAQGASGATAAARLSH--QLLAAHGGAAARQ 147
Query: 211 ---------EGQVG--RPQRAGVARG--DAERQRAGPRATRARDLDEDGLGHAHGPAGED 257
+G V RP G +G +AE Q PR R R G G G AGE
Sbjct: 148 LLLGAGRAVDGFVAQARPGPGGQQQGGHEAEGQHDRPRTGRGRGAL--GAGGERGRAGER 205
Query: 258 ERA 260
RA
Sbjct: 206 RRA 208
>gi|239745171 PREDICTED: hypothetical protein XP_002343379 [Homo
sapiens]
Length = 765
Score = 32.3 bits (72), Expect = 0.54
Identities = 33/108 (30%), Positives = 40/108 (37%), Gaps = 17/108 (15%)
Query: 193 GHAAHGPEFLAVHQGLRAEGQVGRPQRAGVARGDAERQRAGPRATRARDLDEDGLGHAHG 252
G AHG A H+ +RA G GVA G E AG R T DG H
Sbjct: 106 GRQAHGELAAAAHKAIRAVAHKGVCGEVGVAGGPVE---AGTRGTGI-----DGCPHLTA 157
Query: 253 PAGEDERA---------LVAPVLHARHRLLVEDADVRAGAQGVETQVA 291
A E RA + + + AR V D + GA+ T A
Sbjct: 158 SAREAGRAGAHEPILQVMASATVGARVTGTVADVEFTVGARESRTAAA 205
>gi|239741438 PREDICTED: hypothetical protein XP_002342169 [Homo
sapiens]
Length = 145
Score = 32.3 bits (72), Expect = 0.54
Identities = 21/64 (32%), Positives = 31/64 (48%), Gaps = 3/64 (4%)
Query: 234 PRATRAR---DLDEDGLGHAHGPAGEDERALVAPVLHARHRLLVEDADVRAGAQGVETQV 290
P +TR + DLDE G A G G AL + A+H L E DV GA+ + ++
Sbjct: 55 PPSTRCQGCSDLDEAGKAQAEGRVGRHGAALDLVPVQAQHLQLGEVHDVHHGAEAADGEL 114
Query: 291 AVEL 294
+ +
Sbjct: 115 CLTI 118
>gi|4504345 alpha 2 globin [Homo sapiens]
Length = 142
Score = 32.3 bits (72), Expect = 0.54
Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 6/62 (9%)
Query: 100 VLSKGSDRRLPRALGEVGVEAGEQGSDGIPR------SARIVEPDADLRDGPVQAEEHPK 153
VLS + A G+VG AGE G++ + R + + P DL G Q + H K
Sbjct: 2 VLSPADKTNVKAAWGKVGAHAGEYGAEALERMFLSFPTTKTYFPHFDLSHGSAQVKGHGK 61
Query: 154 RL 155
++
Sbjct: 62 KV 63
>gi|169214874 PREDICTED: hypothetical protein [Homo sapiens]
Length = 583
Score = 32.0 bits (71), Expect = 0.70
Identities = 48/170 (28%), Positives = 60/170 (35%), Gaps = 22/170 (12%)
Query: 117 GVEAGEQGSDGIPRSARIVEPDADLRDGPVQAEEHPKRLRGVHAQLHAGGRAIVAEVQLA 176
G +AGE G+ G VE + DG + E+ L G A GR +
Sbjct: 118 GRDAGELGAVG-HLVLDDVEQGREEGDGHAEEEQQEPELAGA-----AAGRE--PQRLQP 169
Query: 177 VGVDHQAQDVAAVQGPGHAAHGPEFLAVHQGLRAEGQVGRPQRAGVARGDAERQRAGPRA 236
GV QA V Q P HA H P + V A + G ARG A Q+
Sbjct: 170 QGVARQAHHVQDAQRPQHAQHQPHLVQV-----AVARAG----LATARGGAVHQQRDVVG 220
Query: 237 TRARDLDE----DGLGHAHGPAGEDERALVAPVLHARHRLLVEDADVRAG 282
+D+ G G E + L HA HRL ED G
Sbjct: 221 QDGHQVDQRQRAPQEGELAGRLNEPQEELQGEPAHA-HRLHDEDVVAHLG 269
>gi|169215109 PREDICTED: hypothetical protein [Homo sapiens]
Length = 583
Score = 32.0 bits (71), Expect = 0.70
Identities = 48/170 (28%), Positives = 60/170 (35%), Gaps = 22/170 (12%)
Query: 117 GVEAGEQGSDGIPRSARIVEPDADLRDGPVQAEEHPKRLRGVHAQLHAGGRAIVAEVQLA 176
G +AGE G+ G VE + DG + E+ L G A GR +
Sbjct: 118 GRDAGELGAVG-HLVLDDVEQGREEGDGHAEEEQQEPELAGA-----AAGRE--PQRLQP 169
Query: 177 VGVDHQAQDVAAVQGPGHAAHGPEFLAVHQGLRAEGQVGRPQRAGVARGDAERQRAGPRA 236
GV QA V Q P HA H P + V A + G ARG A Q+
Sbjct: 170 QGVARQAHHVQDAQRPQHAQHQPHLVQV-----AVARAG----LATARGGAVHQQRDVVG 220
Query: 237 TRARDLDE----DGLGHAHGPAGEDERALVAPVLHARHRLLVEDADVRAG 282
+D+ G G E + L HA HRL ED G
Sbjct: 221 QDGHQVDQRQRAPQEGELAGRLNEPQEELQGEPAHA-HRLHDEDVVAHLG 269
>gi|28875797 small protein rich in arginine and glycine [Homo
sapiens]
Length = 248
Score = 31.6 bits (70), Expect = 0.91
Identities = 39/137 (28%), Positives = 48/137 (35%), Gaps = 13/137 (9%)
Query: 132 ARIVEPDADLRDGPVQAEEHPKRLRGVHAQLHAGGRAIVAEVQLAVGVDHQAQDVAAVQG 191
AR+ P L G + P RG+ GGRA L G+ + Q++
Sbjct: 86 ARLGRPIGALARGAIGGRGLPIIQRGLPRGGLRGGRA--TRTLLRGGMSLRGQNLL---- 139
Query: 192 PGHAAHGPEFLAVHQGLRAEGQVGR--PQRAGVARGDAERQRAGPRATRARDLDEDGLGH 249
G +A GLR G GR P R G+ RG R G R G G
Sbjct: 140 -----RGGRAVAPRMGLRRGGVRGRGGPGRGGLGRGAMGRGGIGGRGRGMIGRGRGGFGG 194
Query: 250 AHGPAGEDERALVAPVL 266
G AL PVL
Sbjct: 195 RGRGRGRGRGALARPVL 211
>gi|41152110 adrenomedullin 2 precursor [Homo sapiens]
Length = 148
Score = 31.6 bits (70), Expect = 0.91
Identities = 27/92 (29%), Positives = 39/92 (42%), Gaps = 19/92 (20%)
Query: 192 PGHAAHGPEFLAVHQGLRAEGQ------VGRPQRAGVARGDAERQRAGPRATRARDL--- 242
P H A P +H+ L+A+ +G+P R G + R+ +GPR T+A+ L
Sbjct: 50 PRHPAPRPVVWKLHRALQAQRGAGLAPVMGQPLRDGGRQHSGPRRHSGPRRTQAQLLRVG 109
Query: 243 ------DEDGLGH----AHGPAGEDERALVAP 264
L H GPAG + A V P
Sbjct: 110 CVLGTCQVQNLSHRLWQLMGPAGRQDSAPVDP 141
>gi|169210434 PREDICTED: hypothetical protein [Homo sapiens]
Length = 301
Score = 31.6 bits (70), Expect = 0.91
Identities = 27/83 (32%), Positives = 37/83 (44%), Gaps = 4/83 (4%)
Query: 209 RAEGQVGRPQRAGVARGDAERQRAGPRATRARDLDEDGLGHAHGPAGEDERALVAPVLHA 268
RA G GRP + +RAG RAR L+ + G AHGP A
Sbjct: 38 RARGPPGRPSLRSDSHPTQRARRAGEGPARAR-LEAERAGCAHGPGAPARTRAHAHKGRG 96
Query: 269 RHRLLVEDADVRA--GAQGVETQ 289
+L+++ A RA G +G ET+
Sbjct: 97 AGKLVIQ-ARTRAQKGGKGEETR 118
>gi|169214604 PREDICTED: hypothetical protein [Homo sapiens]
Length = 583
Score = 31.6 bits (70), Expect = 0.91
Identities = 49/177 (27%), Positives = 62/177 (35%), Gaps = 37/177 (20%)
Query: 117 GVEAGEQGSDGIPRSARIVEPDADLRDGPVQAEEHPKRLRGVHAQLHAGGRAIVAEVQLA 176
G +AGE G+ G VE + DG + E+ L G A GR +
Sbjct: 118 GRDAGELGAVG-HLVLDDVEQGREEGDGHAEEEQQEPELAGA-----AAGRE--PQRLQP 169
Query: 177 VGVDHQAQDVAAVQGPGHAAHGPEFL---------------AVHQGLRAEGQVGR----- 216
GV QA V Q P HA H P + AVHQ GQ G
Sbjct: 170 QGVARQAHHVQDAQRPQHAQHQPHLVQVAVARAGLATACGGAVHQQRDVVGQDGHQVDQR 229
Query: 217 ---PQRAGVA--RGDAERQRAGPRATRARDLDEDGLGH----AHGPAGEDERALVAP 264
PQ +A + + + G A R DED + H A G G D + P
Sbjct: 230 QRAPQEGELAGRLNEPQEELQGEPAHAHRLHDEDVVAHLGTVALGERGRDAGGVSGP 286
>gi|239750574 PREDICTED: hypothetical protein [Homo sapiens]
Length = 1297
Score = 30.8 bits (68), Expect = 1.6
Identities = 38/115 (33%), Positives = 43/115 (37%), Gaps = 28/115 (24%)
Query: 181 HQAQDVAAVQGPGHAAHGPEFLAVHQGLRAEGQVGRPQRAGVARGDAERQRAGPRATRAR 240
H+A +G G AA GP AV Q +R R RAG R+R G RA A
Sbjct: 820 HEAGVAGGARGGGAAAGGPLAGAVVQRMRQ-----RRVRAG-------RRRVGARAVAAA 867
Query: 241 DLDEDGL---------GHAHGPAGEDERALVAPVLHARHRLLVEDADVRAGAQGV 286
G GH HG A AP RH + A A AQGV
Sbjct: 868 GRQGAGAGGGGRRVRHGHGHGAAVLQR----APCRQQRH---LAPAAAAAAAQGV 915
>gi|169205732 PREDICTED: hypothetical protein [Homo sapiens]
Length = 1297
Score = 30.8 bits (68), Expect = 1.6
Identities = 38/115 (33%), Positives = 43/115 (37%), Gaps = 28/115 (24%)
Query: 181 HQAQDVAAVQGPGHAAHGPEFLAVHQGLRAEGQVGRPQRAGVARGDAERQRAGPRATRAR 240
H+A +G G AA GP AV Q +R R RAG R+R G RA A
Sbjct: 820 HEAGVAGGARGGGAAAGGPLAGAVVQRMRQ-----RRVRAG-------RRRVGARAVAAA 867
Query: 241 DLDEDGL---------GHAHGPAGEDERALVAPVLHARHRLLVEDADVRAGAQGV 286
G GH HG A AP RH + A A AQGV
Sbjct: 868 GRQGAGAGGGGRRVRHGHGHGAAVLQR----APCRQQRH---LAPAAAAAAAQGV 915
>gi|239744552 PREDICTED: hypothetical protein [Homo sapiens]
Length = 221
Score = 30.8 bits (68), Expect = 1.6
Identities = 41/162 (25%), Positives = 60/162 (37%), Gaps = 15/162 (9%)
Query: 116 VGVEAGEQGSD--GIPRSARIVEPDADLRDGPVQAEEHPKRLRGVHAQLHAGGRAIVAEV 173
+GV+ G G + G+ R A L G Q P R+R A+ GG A
Sbjct: 19 IGVQPGWGGEEVQGLAR--------AGLATGKGQRPPGPGRVRAAQARARRGGGARERPA 70
Query: 174 QLAVGVDHQAQDVAAVQGPGHAAHGPEFLAVHQGLRAEGQVGRPQRAGVARGDAERQRAG 233
+ A G A P A GP A+ + AE + + + + G A A
Sbjct: 71 EGARGPRAARGGARAAPMPSSAPRGPTEPALRRPSSAERPLAQAPSSSASVGRAPGAMAS 130
Query: 234 PRATRARDLDEDGLGHAHGPAGEDERALVAPVLHARHRLLVE 275
P +R+ + G P E++ P R RLL+E
Sbjct: 131 P--SRSSEATGKPRGRDGRPRREEDD---VPPEEKRLRLLLE 167
>gi|239751877 PREDICTED: hypothetical protein XP_002348035 [Homo
sapiens]
Length = 944
Score = 30.4 bits (67), Expect = 2.0
Identities = 27/72 (37%), Positives = 33/72 (45%), Gaps = 6/72 (8%)
Query: 166 GRAIVAEVQLAVGVDHQAQDVAAVQGPGHAAHGPEFLAVHQGLRAEGQVGRPQRAGVARG 225
GRA+ EV L VGV H +D+A + G G G G A + + Q GV G
Sbjct: 707 GRAVGLEVPLQVGVAH--EDLAGLPGLGGRGRGG---GTRGGGGAVRALVQQQVGGVGEG 761
Query: 226 -DAERQRAGPRA 236
AER GP A
Sbjct: 762 LGAERAAEGPLA 773
>gi|134019487 chromatin modifying protein 1A isoform 1 [Homo
sapiens]
Length = 240
Score = 30.4 bits (67), Expect = 2.0
Identities = 32/105 (30%), Positives = 45/105 (42%), Gaps = 5/105 (4%)
Query: 114 GEVGVEAGEQGSDGIPRSARIVE--PDAD-LRDGP-VQAEEHPKRLRGVHAQLHAGGRAI 169
GE EAG++G +G+ A E P A+ R P V E HP+ R R
Sbjct: 5 GEAAGEAGQEGGEGLQGGAGQSEEGPSAEKCRVCPCVCRERHPQEERRCELASDGVPRRR 64
Query: 170 VAEVQLAVGVDHQAQDVAAVQGPGHAAHGPEFLAVHQGLRAEGQV 214
+ +Q A D++ D G GPE +GL ++GQV
Sbjct: 65 -SGLQGADSCDYEGGDQEYGPGDQSPGQGPEHHGPAEGLLSDGQV 108
>gi|109689720 acyl-Coenzyme A binding domain containing 5 isoform 2
[Homo sapiens]
Length = 490
Score = 30.4 bits (67), Expect = 2.0
Identities = 30/117 (25%), Positives = 43/117 (36%), Gaps = 12/117 (10%)
Query: 186 VAAVQGPGHAAHGPEFLAVHQGLRAEGQVGRPQRAG-------VARGDAERQRAGPRATR 238
V AV+G G HG E G G R +R G V RG R + T+
Sbjct: 324 VVAVEGKGEVKHGGE-----DGRNNSGAPHREKRGGETDEFSNVRRGRGHRMQHLSEGTK 378
Query: 239 ARDLDEDGLGHAHGPAGEDERALVAPVLHARHRLLVEDADVRAGAQGVETQVAVELR 295
R + G G G +L + RL + +V Q +ET A++ +
Sbjct: 379 GRQVGSGGDGERWGSDRGSRGSLNEQIALVLMRLQEDMQNVLQRLQKLETLTALQAK 435
>gi|203098629 acyl-Coenzyme A binding domain containing 5 isoform 1
[Homo sapiens]
Length = 525
Score = 30.4 bits (67), Expect = 2.0
Identities = 30/117 (25%), Positives = 43/117 (36%), Gaps = 12/117 (10%)
Query: 186 VAAVQGPGHAAHGPEFLAVHQGLRAEGQVGRPQRAG-------VARGDAERQRAGPRATR 238
V AV+G G HG E G G R +R G V RG R + T+
Sbjct: 359 VVAVEGKGEVKHGGE-----DGRNNSGAPHREKRGGETDEFSNVRRGRGHRMQHLSEGTK 413
Query: 239 ARDLDEDGLGHAHGPAGEDERALVAPVLHARHRLLVEDADVRAGAQGVETQVAVELR 295
R + G G G +L + RL + +V Q +ET A++ +
Sbjct: 414 GRQVGSGGDGERWGSDRGSRGSLNEQIALVLMRLQEDMQNVLQRLQKLETLTALQAK 470
>gi|116686120 periaxin isoform 2 [Homo sapiens]
Length = 1461
Score = 30.4 bits (67), Expect = 2.0
Identities = 40/147 (27%), Positives = 63/147 (42%), Gaps = 27/147 (18%)
Query: 87 LPPAELPRGPELHVLSKGSDRRLPRALGEVGVEAGE-QGSDGI-----------PRSARI 134
LP ++P+ P++H L K + +LPRA EV ++A + + ++G+ P+ R
Sbjct: 755 LPEMQVPKVPDVH-LPKAPEVKLPRA-PEVQLKATKAEQAEGMEFGFKMPKMTMPKLGRA 812
Query: 135 VEPDADLRDGPVQAEEHPKRLR------GVHAQLHAGGRAIV---AEVQLAVGVDHQAQD 185
P + G AE K + V + H G ++ E+ L + Q Q
Sbjct: 813 ESPSRG-KPGEAGAEVSGKLVTLPCLQPEVDGEAHVGVPSLTLPSVELDLPGALGLQGQV 871
Query: 186 VAAVQGPGHAAHGPEFLAVHQGLRAEG 212
AA G G GPE A G+R G
Sbjct: 872 PAAKMGKGERVEGPEVAA---GVREVG 895
>gi|117414137 retinitis pigmentosa 1-like 1 [Homo sapiens]
Length = 2400
Score = 30.4 bits (67), Expect = 2.0
Identities = 49/200 (24%), Positives = 75/200 (37%), Gaps = 30/200 (15%)
Query: 115 EVGVEAGEQGSDGIPRSARIVEPDADLRDGPVQAEEHPKRLRGVHAQLHAGGRAIVAEVQ 174
EV VE E + P S + P+A+ + E P+ GV AQ + G E Q
Sbjct: 1981 EVEVETQEAEGEAQPESEDVEAPEAEGEMQEAEEEAQPES-DGVEAQPKSEGE----EAQ 2035
Query: 175 LAVGVDHQAQDVAAVQGPGHAAHGPEFLAVHQGLRAEGQV------GRPQRAGV----AR 224
G + + A + G PE A + AEG+V P+ V A
Sbjct: 2036 EVEGETQKTEGDAQPESDG--VEAPE--AEEEAQEAEGEVQEAEGEAHPESEDVDAQEAE 2091
Query: 225 GDAERQRAGPRATRARDLDEDGLG----HAHGPAGEDERALVAPVLHARHR-----LLVE 275
G+A+ + G A A + G G A + + AP + + +
Sbjct: 2092 GEAQPESEGVEAPEAEGEAQKAEGIEAPETEGEAQPESEGIEAPEAEGEAQPESEGVEAQ 2151
Query: 276 DADVRA--GAQGVETQVAVE 293
DA+ A ++G+E Q A E
Sbjct: 2152 DAEGEAQPESEGIEAQEAEE 2171
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.317 0.135 0.403
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,237,868
Number of Sequences: 37866
Number of extensions: 593206
Number of successful extensions: 1852
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 41
Number of HSP's that attempted gapping in prelim test: 1833
Number of HSP's gapped (non-prelim): 61
length of query: 305
length of database: 18,247,518
effective HSP length: 102
effective length of query: 203
effective length of database: 14,385,186
effective search space: 2920192758
effective search space used: 2920192758
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.