Guide to the Human Genome
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Name: LOC100131909 Sequence: fasta or formatted (252aa) NCBI GI: 169210802
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Other entries for this name:
alt mRNA {252aa} PREDICTED: hypothetical protein
alt mRNA {252aa} PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            10.3         26           3
 C cysteine            1.6          4           1
 D aspartate           7.1         18           2
 E glutamate           7.5         19           3
 F phenylalanine       1.6          4           1
 G glycine            11.9         30           2
 H histidine           7.9         20           1
 I isoleucine          2.4          6           1
 K lysine              4.0         10           1
 L leucine             5.2         13           1
 M methionine          0.4          1           1
 N asparagine          1.2          3           1
 P proline             5.6         14           2
 Q glutamine           8.3         21           2
 R arginine            7.9         20           3
 S serine              4.8         12           1
 T threonine           2.4          6           1
 V valine              7.5         19           2
 W tryptophan          1.2          3           1
 Y tyrosine            1.2          3           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100131909          1.000   PREDICTED: hypothetical protein 
LOC100131909          1.000   PREDICTED: hypothetical protein 
LOC100291755          0.134   PREDICTED: hypothetical protein XP_002345320 
LOC100290314          0.132   PREDICTED: hypothetical protein XP_002347649 
LOC100289552          0.132   PREDICTED: hypothetical protein XP_002342199 
LOC100292515          0.051   PREDICTED: hypothetical protein 
LOC100289910          0.051   PREDICTED: hypothetical protein XP_002347211 
LOC100287264          0.051   PREDICTED: hypothetical protein XP_002343075 
RPGR                  0.024   retinitis pigmentosa GTPase regulator isoform C [Hom...
CRNN                  0.020   cornulin 
LOC100132369          0.020   PREDICTED: hypothetical protein 
LOC100132369          0.020   PREDICTED: hypothetical protein 
LOC100132369          0.020   PREDICTED: hypothetical protein 
PLEKHA4               0.020   pleckstrin homology domain containing family A memb...
HRC                   0.020   histidine rich calcium binding protein precursor [Hom...
MDN1                  0.020   MDN1, midasin homolog 
ANP32A                0.016   acidic (leucine-rich) nuclear phosphoprotein 32 famil...
LOC100127944          0.016   PREDICTED: hypothetical protein 
LOC100127944          0.016   PREDICTED: hypothetical protein 
LOC100127944          0.016   PREDICTED: hypothetical protein 
SETD1B                0.016   SET domain containing 1B 
PSIP1                 0.016   PC4 and SFRS1 interacting protein 1 isoform 1 [Homo...
PSIP1                 0.014   PC4 and SFRS1 interacting protein 1 isoform 2 [Homo...
PSIP1                 0.014   PC4 and SFRS1 interacting protein 1 isoform 2 
ZNF526                0.014   zinc finger protein 526 
C1orf173              0.014   hypothetical protein LOC127254 
AXIN1                 0.012   axin 1 isoform a 
AXIN1                 0.012   axin 1 isoform b 
LOC647020             0.012   PREDICTED: similar to acidic (leucine-rich) nuclear...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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