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Search of human proteins with 239755396
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239755396 PREDICTED: hypothetical protein XP_002344552 [Homo
sapiens]
(153 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239755396 PREDICTED: hypothetical protein XP_002344552 [Homo ... 370 e-103
gi|239747664 PREDICTED: similar to hCG2042412 [Homo sapiens] 42 2e-04
gi|59938776 cAMP responsive element binding protein 5 isoform de... 37 0.007
gi|59938774 cAMP responsive element binding protein 5 isoform be... 37 0.007
gi|59938772 cAMP responsive element binding protein 5 isoform ga... 37 0.007
gi|59938770 cAMP responsive element binding protein 5 isoform al... 37 0.007
gi|4504489 histidine-rich glycoprotein precursor [Homo sapiens] 35 0.019
gi|221316609 sperm-associated cation channel 1 [Homo sapiens] 33 0.095
gi|209529739 hypothetical protein LOC100132247 [Homo sapiens] 33 0.12
gi|28416953 acyl-CoA synthetase short-chain family member 1 [Hom... 32 0.28
gi|34740327 zinc finger protein 804A [Homo sapiens] 31 0.47
gi|134031945 SCO-spondin [Homo sapiens] 30 0.81
gi|239745501 PREDICTED: similar to acyl-CoA synthetase medium-ch... 30 1.1
gi|163965434 dapper, antagonist of beta-catenin, homolog 2 [Homo... 30 1.1
gi|119220564 one cut domain, family member 2 [Homo sapiens] 29 1.4
gi|148762982 hypothetical protein LOC387640 [Homo sapiens] 29 1.4
gi|151301053 RNA binding motif protein 33 [Homo sapiens] 29 1.8
gi|126723060 zinc finger CCCH-type containing 4 [Homo sapiens] 29 1.8
gi|22095349 WD and tetratricopeptide repeats 1 [Homo sapiens] 28 2.3
gi|33383239 protein kinase Myt1 isoform 2 [Homo sapiens] 28 2.3
gi|54792150 zinc finger protein 473 [Homo sapiens] 28 2.3
gi|54792148 zinc finger protein 473 [Homo sapiens] 28 2.3
gi|239753565 PREDICTED: hypothetical protein [Homo sapiens] 28 3.1
gi|239748093 PREDICTED: hypothetical protein XP_002346551 [Homo ... 28 3.1
gi|239741989 PREDICTED: hypothetical protein XP_002342387 [Homo ... 28 3.1
gi|56711322 ring finger protein 43 [Homo sapiens] 28 3.1
gi|54112117 splicing factor 3b, subunit 1 isoform 1 [Homo sapiens] 28 4.0
gi|148596936 hypoxia-inducible factor 1, alpha subunit inhibitor... 27 5.2
gi|156105693 PPAR-alpha interacting complex protein 285 isoform ... 27 5.2
gi|156105695 PPAR-alpha interacting complex protein 285 isoform ... 27 5.2
>gi|239755396 PREDICTED: hypothetical protein XP_002344552 [Homo
sapiens]
Length = 153
Score = 370 bits (951), Expect = e-103
Identities = 153/153 (100%), Positives = 153/153 (100%)
Query: 1 MVSKDQVLSHHPVWETDHHQHVLKGDHHPCFSKGPCHPLHHAWEFCHHRRSSKVLDHHPT 60
MVSKDQVLSHHPVWETDHHQHVLKGDHHPCFSKGPCHPLHHAWEFCHHRRSSKVLDHHPT
Sbjct: 1 MVSKDQVLSHHPVWETDHHQHVLKGDHHPCFSKGPCHPLHHAWEFCHHRRSSKVLDHHPT 60
Query: 61 LAWDPGHHPCLAWDPGHHPCLAWDPGHHPCLAWDPDHHPTLAWDPGHHQHYARMIAHHQR 120
LAWDPGHHPCLAWDPGHHPCLAWDPGHHPCLAWDPDHHPTLAWDPGHHQHYARMIAHHQR
Sbjct: 61 LAWDPGHHPCLAWDPGHHPCLAWDPGHHPCLAWDPDHHPTLAWDPGHHQHYARMIAHHQR 120
Query: 121 LLASAPGHHPSHVLVLCPHQLFASFLCPHPVLV 153
LLASAPGHHPSHVLVLCPHQLFASFLCPHPVLV
Sbjct: 121 LLASAPGHHPSHVLVLCPHQLFASFLCPHPVLV 153
>gi|239747664 PREDICTED: similar to hCG2042412 [Homo sapiens]
Length = 336
Score = 42.4 bits (98), Expect = 2e-04
Identities = 21/48 (43%), Positives = 21/48 (43%)
Query: 59 PTLAWDPGHHPCLAWDPGHHPCLAWDPGHHPCLAWDPDHHPTLAWDPG 106
P AWD P AWD P AWD P AWD P AWD G
Sbjct: 162 PVSAWDGAIVPVSAWDGAIVPVSAWDGAIVPVSAWDGGIVPVSAWDGG 209
Score = 42.0 bits (97), Expect = 2e-04
Identities = 21/48 (43%), Positives = 21/48 (43%)
Query: 59 PTLAWDPGHHPCLAWDPGHHPCLAWDPGHHPCLAWDPDHHPTLAWDPG 106
P AWD P AWD P AWD P AWD P AWD G
Sbjct: 152 PVSAWDGAIVPVSAWDGAIVPVSAWDGAIVPVSAWDGAIVPVSAWDGG 199
Score = 41.6 bits (96), Expect = 3e-04
Identities = 27/76 (35%), Positives = 29/76 (38%), Gaps = 6/76 (7%)
Query: 29 PCFSKGPCHPLHHAWEFCHHRRSSKVLDHHPTLAWDPGHHPCLAWDPGHHPCLAWDPGHH 88
P + CH HH F SS + P WD P AWD P AWD
Sbjct: 28 PVAAATSCHLCHH---FSRTPSSSLSV---PVSVWDGAIVPVSAWDGAIVPVSAWDGAIV 81
Query: 89 PCLAWDPDHHPTLAWD 104
P AWD P AWD
Sbjct: 82 PVSAWDGAIVPVSAWD 97
Score = 41.6 bits (96), Expect = 3e-04
Identities = 20/46 (43%), Positives = 20/46 (43%)
Query: 59 PTLAWDPGHHPCLAWDPGHHPCLAWDPGHHPCLAWDPDHHPTLAWD 104
P AWD P AWD P AWD G P AWD P WD
Sbjct: 172 PVSAWDGAIVPVSAWDGAIVPVSAWDGGIVPVSAWDGGIVPVSVWD 217
Score = 41.6 bits (96), Expect = 3e-04
Identities = 20/46 (43%), Positives = 20/46 (43%)
Query: 59 PTLAWDPGHHPCLAWDPGHHPCLAWDPGHHPCLAWDPDHHPTLAWD 104
P AWD P AWD G P AWD G P WD P WD
Sbjct: 182 PVSAWDGAIVPVSAWDGGIVPVSAWDGGIVPVSVWDGVIVPVSVWD 227
Score = 40.4 bits (93), Expect = 6e-04
Identities = 20/46 (43%), Positives = 20/46 (43%)
Query: 59 PTLAWDPGHHPCLAWDPGHHPCLAWDPGHHPCLAWDPDHHPTLAWD 104
P AWD P AWD P AWD P AWD P AWD
Sbjct: 62 PVSAWDGAIVPVSAWDGAIVPVSAWDGAIVPVSAWDGAIVPVSAWD 107
Score = 40.4 bits (93), Expect = 6e-04
Identities = 20/46 (43%), Positives = 20/46 (43%)
Query: 59 PTLAWDPGHHPCLAWDPGHHPCLAWDPGHHPCLAWDPDHHPTLAWD 104
P AWD P AWD P AWD P AWD P AWD
Sbjct: 72 PVSAWDGAIVPVSAWDGAIVPVSAWDGAIVPVSAWDGAIVPVSAWD 117
Score = 40.4 bits (93), Expect = 6e-04
Identities = 20/46 (43%), Positives = 20/46 (43%)
Query: 59 PTLAWDPGHHPCLAWDPGHHPCLAWDPGHHPCLAWDPDHHPTLAWD 104
P AWD P AWD P AWD P AWD P AWD
Sbjct: 82 PVSAWDGAIVPVSAWDGAIVPVSAWDGAIVPVSAWDGAIVPVSAWD 127
Score = 40.4 bits (93), Expect = 6e-04
Identities = 20/46 (43%), Positives = 20/46 (43%)
Query: 59 PTLAWDPGHHPCLAWDPGHHPCLAWDPGHHPCLAWDPDHHPTLAWD 104
P AWD P AWD P AWD P AWD P AWD
Sbjct: 92 PVSAWDGAIVPVSAWDGAIVPVSAWDGAIVPVSAWDGAIVPVSAWD 137
Score = 40.4 bits (93), Expect = 6e-04
Identities = 20/46 (43%), Positives = 20/46 (43%)
Query: 59 PTLAWDPGHHPCLAWDPGHHPCLAWDPGHHPCLAWDPDHHPTLAWD 104
P AWD P AWD P AWD P AWD P AWD
Sbjct: 102 PVSAWDGAIVPVSAWDGAIVPVSAWDGAIVPVSAWDGAIVPVSAWD 147
Score = 40.4 bits (93), Expect = 6e-04
Identities = 20/46 (43%), Positives = 20/46 (43%)
Query: 59 PTLAWDPGHHPCLAWDPGHHPCLAWDPGHHPCLAWDPDHHPTLAWD 104
P AWD P AWD P AWD P AWD P AWD
Sbjct: 112 PVSAWDGAIVPVSAWDGAIVPVSAWDGAIVPVSAWDGAIVPVSAWD 157
Score = 40.4 bits (93), Expect = 6e-04
Identities = 20/46 (43%), Positives = 20/46 (43%)
Query: 59 PTLAWDPGHHPCLAWDPGHHPCLAWDPGHHPCLAWDPDHHPTLAWD 104
P AWD P AWD P AWD P AWD P AWD
Sbjct: 122 PVSAWDGAIVPVSAWDGAIVPVSAWDGAIVPVSAWDGAIVPVSAWD 167
Score = 40.4 bits (93), Expect = 6e-04
Identities = 20/46 (43%), Positives = 20/46 (43%)
Query: 59 PTLAWDPGHHPCLAWDPGHHPCLAWDPGHHPCLAWDPDHHPTLAWD 104
P AWD P AWD P AWD P AWD P AWD
Sbjct: 132 PVSAWDGAIVPVSAWDGAIVPVSAWDGAIVPVSAWDGAIVPVSAWD 177
Score = 40.4 bits (93), Expect = 6e-04
Identities = 20/46 (43%), Positives = 20/46 (43%)
Query: 59 PTLAWDPGHHPCLAWDPGHHPCLAWDPGHHPCLAWDPDHHPTLAWD 104
P AWD P AWD P AWD P AWD P AWD
Sbjct: 142 PVSAWDGAIVPVSAWDGAIVPVSAWDGAIVPVSAWDGAIVPVSAWD 187
Score = 39.3 bits (90), Expect = 0.001
Identities = 19/46 (41%), Positives = 19/46 (41%)
Query: 59 PTLAWDPGHHPCLAWDPGHHPCLAWDPGHHPCLAWDPDHHPTLAWD 104
P AWD G P AWD G P WD P WD P WD
Sbjct: 192 PVSAWDGGIVPVSAWDGGIVPVSVWDGVIVPVSVWDGRIVPVSVWD 237
>gi|59938776 cAMP responsive element binding protein 5 isoform delta
[Homo sapiens]
Length = 369
Score = 37.0 bits (84), Expect = 0.007
Identities = 23/74 (31%), Positives = 29/74 (39%), Gaps = 3/74 (4%)
Query: 4 KDQVLSHHPVWETDHHQHVLKGDHHPCFSKGPCHPLHHAWEFCHHRRSSKVLDHHPTLAW 63
+DQ HH + HQH HHP + HP HH HH+++ H L
Sbjct: 127 QDQTPHHH--MHSHPHQHQTLPPHHP-YPHQHQHPAHHPHPQPHHQQNHPHHHSHSHLHA 183
Query: 64 DPGHHPCLAWDPGH 77
P HH P H
Sbjct: 184 HPAHHQTSPHPPLH 197
>gi|59938774 cAMP responsive element binding protein 5 isoform beta
[Homo sapiens]
Length = 501
Score = 37.0 bits (84), Expect = 0.007
Identities = 23/74 (31%), Positives = 29/74 (39%), Gaps = 3/74 (4%)
Query: 4 KDQVLSHHPVWETDHHQHVLKGDHHPCFSKGPCHPLHHAWEFCHHRRSSKVLDHHPTLAW 63
+DQ HH + HQH HHP + HP HH HH+++ H L
Sbjct: 259 QDQTPHHH--MHSHPHQHQTLPPHHP-YPHQHQHPAHHPHPQPHHQQNHPHHHSHSHLHA 315
Query: 64 DPGHHPCLAWDPGH 77
P HH P H
Sbjct: 316 HPAHHQTSPHPPLH 329
>gi|59938772 cAMP responsive element binding protein 5 isoform gamma
[Homo sapiens]
Length = 475
Score = 37.0 bits (84), Expect = 0.007
Identities = 23/74 (31%), Positives = 29/74 (39%), Gaps = 3/74 (4%)
Query: 4 KDQVLSHHPVWETDHHQHVLKGDHHPCFSKGPCHPLHHAWEFCHHRRSSKVLDHHPTLAW 63
+DQ HH + HQH HHP + HP HH HH+++ H L
Sbjct: 233 QDQTPHHH--MHSHPHQHQTLPPHHP-YPHQHQHPAHHPHPQPHHQQNHPHHHSHSHLHA 289
Query: 64 DPGHHPCLAWDPGH 77
P HH P H
Sbjct: 290 HPAHHQTSPHPPLH 303
>gi|59938770 cAMP responsive element binding protein 5 isoform alpha
[Homo sapiens]
Length = 508
Score = 37.0 bits (84), Expect = 0.007
Identities = 23/74 (31%), Positives = 29/74 (39%), Gaps = 3/74 (4%)
Query: 4 KDQVLSHHPVWETDHHQHVLKGDHHPCFSKGPCHPLHHAWEFCHHRRSSKVLDHHPTLAW 63
+DQ HH + HQH HHP + HP HH HH+++ H L
Sbjct: 266 QDQTPHHH--MHSHPHQHQTLPPHHP-YPHQHQHPAHHPHPQPHHQQNHPHHHSHSHLHA 322
Query: 64 DPGHHPCLAWDPGH 77
P HH P H
Sbjct: 323 HPAHHQTSPHPPLH 336
>gi|4504489 histidine-rich glycoprotein precursor [Homo sapiens]
Length = 525
Score = 35.4 bits (80), Expect = 0.019
Identities = 39/127 (30%), Positives = 41/127 (32%), Gaps = 30/127 (23%)
Query: 11 HPVWETDHHQHVLKGDHHPCFSKGPCHPLHHAWEFCHHRRSSKVLDHHPTLAWDPGHHPC 70
HP H QH HHP HH E HR+ HP GHHP
Sbjct: 350 HPHKHHSHEQH--PHGHHP--------HAHHPHEHDTHRQ-------HPH-----GHHPH 387
Query: 71 LAWDPGHHPCLAWDPGHHPCLAWDPDHHPTLAWDP-----GHHQHYARMIAHHQRLLASA 125
GHHP GHHP D+ P DP GH H H R
Sbjct: 388 GHHPHGHHPHGHHPHGHHPHCHDFQDYGPC---DPPPHNQGHCCHGHGPPPGHLRRRGPG 444
Query: 126 PGHHPSH 132
G P H
Sbjct: 445 KGPRPFH 451
>gi|221316609 sperm-associated cation channel 1 [Homo sapiens]
Length = 780
Score = 33.1 bits (74), Expect = 0.095
Identities = 16/46 (34%), Positives = 21/46 (45%), Gaps = 3/46 (6%)
Query: 16 TDHHQHVLKGDHHPC---FSKGPCHPLHHAWEFCHHRRSSKVLDHH 58
+D+H +GDHHP P H HH + HR + DHH
Sbjct: 261 SDYHSEYHQGDHHPSEYHHGDHPHHTQHHYHQTHRHRDYHQHQDHH 306
>gi|209529739 hypothetical protein LOC100132247 [Homo sapiens]
Length = 1133
Score = 32.7 bits (73), Expect = 0.12
Identities = 32/123 (26%), Positives = 46/123 (37%), Gaps = 14/123 (11%)
Query: 18 HHQHVLKGDHHPCFSKGPCHPLHHAWEFCHHRRSSKVLD--HHPTLAWDPGHHPCLAWDP 75
HHQ ++ H P S P HP H + R V HP H P ++ P
Sbjct: 619 HHQPMIISRHLPSVSSLPFHPQLHPQQMIISRHLPSVCGGRFHPERMIISRHLPSVSSLP 678
Query: 76 GHHPCLAWDPGHHPCLAWDPDHHPTLAWDPGHHQHYARMIAHHQRLLASAPGH---HPSH 132
H P HP H P++ H Q +I+ H ++S P H HP
Sbjct: 679 FH-------PQLHPQQMIISRHLPSVCGGRFHPQQ--MIISRHLPSVSSLPFHPQLHPQQ 729
Query: 133 VLV 135
+++
Sbjct: 730 MII 732
Score = 29.6 bits (65), Expect = 1.1
Identities = 31/123 (25%), Positives = 45/123 (36%), Gaps = 14/123 (11%)
Query: 18 HHQHVLKGDHHPCFSKGPCHPLHHAWEFCHHRRSSKVLD--HHPTLAWDPGHHPCLAWDP 75
H Q ++ H P S P HP H + R V HP H P ++ P
Sbjct: 745 HPQRMIISRHLPSVSSLPFHPQLHPQQMIISRHLPSVCGGRFHPQQMIISRHLPSVSSLP 804
Query: 76 GHHPCLAWDPGHHPCLAWDPDHHPTLAWDPGHHQHYARMIAHHQRLLASAPGH---HPSH 132
H P HP H P++ H Q +I+ H ++S P H HP
Sbjct: 805 FH-------PQLHPQQMIISRHLPSVCGGRFHPQR--MIISRHLPSVSSLPFHPQLHPQQ 855
Query: 133 VLV 135
+++
Sbjct: 856 MII 858
>gi|28416953 acyl-CoA synthetase short-chain family member 1 [Homo
sapiens]
Length = 689
Score = 31.6 bits (70), Expect = 0.28
Identities = 13/37 (35%), Positives = 16/37 (43%)
Query: 72 AWDPGHHPCLAWDPGHHPCLAWDPDHHPTLAWDPGHH 108
A PG +P L+ P W P TL WD +H
Sbjct: 52 AAQPGSYPALSAQAAREPAAFWGPLARDTLVWDTPYH 88
Score = 30.8 bits (68), Expect = 0.47
Identities = 14/43 (32%), Positives = 17/43 (39%), Gaps = 2/43 (4%)
Query: 62 AWDPGHHPCLAWDPGHHPCLAWDPGHHPCLAWDPDHHPTLAWD 104
A PG +P L+ P W P L WD +H WD
Sbjct: 52 AAQPGSYPALSAQAAREPAAFWGPLARDTLVWDTPYH--TVWD 92
Score = 26.6 bits (57), Expect = 8.9
Identities = 12/39 (30%), Positives = 15/39 (38%), Gaps = 2/39 (5%)
Query: 58 HPTLAWDPGHHPCLAWDPGHHPCLAWDPGHHPCLAWDPD 96
+P L+ P W P L WD +H WD D
Sbjct: 58 YPALSAQAAREPAAFWGPLARDTLVWDTPYH--TVWDCD 94
>gi|34740327 zinc finger protein 804A [Homo sapiens]
Length = 1209
Score = 30.8 bits (68), Expect = 0.47
Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Query: 115 IAHHQRLLASAPGHHPSHVLV-LCPHQLFASFLCPHPVLV 153
+A Q + A HPSH+ PH LF S L PHP ++
Sbjct: 1164 VAPPQMPIIPASVLHPSHLAFPSLPHALFPSLLSPHPTVI 1203
>gi|134031945 SCO-spondin [Homo sapiens]
Length = 5147
Score = 30.0 bits (66), Expect = 0.81
Identities = 23/81 (28%), Positives = 25/81 (30%), Gaps = 18/81 (22%)
Query: 27 HHPCFSKGPCHPLHHAWEFCHHRRSSKVLDHHPTLAWDPGHHPCLAWDPGH------HPC 80
H C GP AW C ++ H T PG PC A D PC
Sbjct: 4760 HQECPVLGPWS----AWSSCSAPCGGGTMERHRTCEGGPGVAPCQAQDTEQRQECNLQPC 4815
Query: 81 LAWDPGH--------HPCLAW 93
PG PCL W
Sbjct: 4816 PECPPGQVLSACATSCPCLCW 4836
>gi|239745501 PREDICTED: similar to acyl-CoA synthetase medium-chain
family member 2 [Homo sapiens]
Length = 1122
Score = 29.6 bits (65), Expect = 1.1
Identities = 31/123 (25%), Positives = 45/123 (36%), Gaps = 14/123 (11%)
Query: 18 HHQHVLKGDHHPCFSKGPCHPLHHAWEFCHHRRSSKVLD--HHPTLAWDPGHHPCLAWDP 75
H Q ++ H P S P HP H + R V HP H P ++ P
Sbjct: 634 HRQRMIISRHLPSVSSLPFHPQLHPQQMIISRHLPSVCGGRFHPQPMIISRHLPSVSSLP 693
Query: 76 GHHPCLAWDPGHHPCLAWDPDHHPTLAWDPGHHQHYARMIAHHQRLLASAPGH---HPSH 132
H P HP H P++ H Q +I+ H ++S P H HP
Sbjct: 694 FH-------PQLHPQQMIISRHLPSVCGGRFHPQ--PMIISRHLPSVSSLPFHPQLHPQQ 744
Query: 133 VLV 135
+++
Sbjct: 745 MII 747
Score = 28.1 bits (61), Expect = 3.1
Identities = 31/123 (25%), Positives = 45/123 (36%), Gaps = 14/123 (11%)
Query: 18 HHQHVLKGDHHPCFSKGPCHPLHHAWEFCHHRRSSKVLD--HHPTLAWDPGHHPCLAWDP 75
H Q ++ H P S P HP H + R V HP H P ++ P
Sbjct: 760 HPQPMIISRHLPSVSSLPFHPQLHPQQMIISRHLPSVCGGRFHPQPMIISRHLPSVSSLP 819
Query: 76 GHHPCLAWDPGHHPCLAWDPDHHPTLAWDPGHHQHYARMIAHHQRLLASAPGH---HPSH 132
H P HP H P++ H Q +I+ H ++S P H HP
Sbjct: 820 FH-------PQLHPQQMIISRHLPSVCGGRFHPQ--PMIISRHLPSVSSLPFHPQLHPQQ 870
Query: 133 VLV 135
+++
Sbjct: 871 MII 873
>gi|163965434 dapper, antagonist of beta-catenin, homolog 2 [Homo
sapiens]
Length = 774
Score = 29.6 bits (65), Expect = 1.1
Identities = 12/32 (37%), Positives = 14/32 (43%)
Query: 59 PTLAWDPGHHPCLAWDPGHHPCLAWDPGHHPC 90
P+L WDP H P P LAW+ C
Sbjct: 530 PSLEWDPAHWPTGRGGLQRRPALAWEAPGRSC 561
Score = 28.9 bits (63), Expect = 1.8
Identities = 13/29 (44%), Positives = 14/29 (48%), Gaps = 1/29 (3%)
Query: 79 PCLAWDPGHHPCLAWDPDHHPTLAWD-PG 106
P L WDP H P P LAW+ PG
Sbjct: 530 PSLEWDPAHWPTGRGGLQRRPALAWEAPG 558
Score = 27.7 bits (60), Expect = 4.0
Identities = 11/26 (42%), Positives = 12/26 (46%)
Query: 69 PCLAWDPGHHPCLAWDPGHHPCLAWD 94
P L WDP H P P LAW+
Sbjct: 530 PSLEWDPAHWPTGRGGLQRRPALAWE 555
>gi|119220564 one cut domain, family member 2 [Homo sapiens]
Length = 504
Score = 29.3 bits (64), Expect = 1.4
Identities = 14/34 (41%), Positives = 16/34 (47%), Gaps = 5/34 (14%)
Query: 94 DPDHHPTLAWDPGHHQHYARMIAHHQRLLASAPG 127
D HHP P HH H+ HHQRL + G
Sbjct: 165 DKFHHPHPHHHPHHHHHH-----HHQRLSGNVSG 193
>gi|148762982 hypothetical protein LOC387640 [Homo sapiens]
Length = 908
Score = 29.3 bits (64), Expect = 1.4
Identities = 13/38 (34%), Positives = 14/38 (36%), Gaps = 8/38 (21%)
Query: 95 PDHHPTLAWDPGHHQHYARMIAHHQRLLASAPGHHPSH 132
P HH HH H+ HH R HHP H
Sbjct: 335 PPHH--------HHHHHHHHHHHHHRAQPPQQSHHPPH 364
>gi|151301053 RNA binding motif protein 33 [Homo sapiens]
Length = 1170
Score = 28.9 bits (63), Expect = 1.8
Identities = 26/85 (30%), Positives = 27/85 (31%), Gaps = 10/85 (11%)
Query: 58 HPTLAWDPGHHPCLAWDPGHHPCLAWDPGHHPCLAWDPDHHPTLAWDPGH---HQHYARM 114
HP L P H P P P P H P P H P P H HQH+
Sbjct: 583 HPPLP--PPHQP-QPQQPQQQPPPQHQPPHQPPHQPPPQHQPPPQHPPQHPPQHQHH--- 636
Query: 115 IAHHQRLLASAPGHHPSHVLVLCPH 139
HH L P P PH
Sbjct: 637 -HHHHHLSVPPPPLMPMSQPQFRPH 660
Score = 27.7 bits (60), Expect = 4.0
Identities = 21/91 (23%), Positives = 26/91 (28%), Gaps = 4/91 (4%)
Query: 58 HPTLAWDPGHHPCLAWDPGHHPCLAWDPGHHPCLAWDPDHHPTLAWDPGHHQHYARMIAH 117
H P P P H P P H P P H P HH H+ +
Sbjct: 590 HQPQPQQPQQQPPPQHQPPHQPPHQPPPQHQPPPQHPPQHPP----QHQHHHHHHHLSVP 645
Query: 118 HQRLLASAPGHHPSHVLVLCPHQLFASFLCP 148
L+ + HV P + CP
Sbjct: 646 PPPLMPMSQPQFRPHVQTAQPQASSSRMQCP 676
>gi|126723060 zinc finger CCCH-type containing 4 [Homo sapiens]
Length = 1303
Score = 28.9 bits (63), Expect = 1.8
Identities = 28/114 (24%), Positives = 35/114 (30%), Gaps = 14/114 (12%)
Query: 34 GPCHPLHHAWEFCHHRRSSKVLDHHPTLAWDPGHHPCLAWDPGHHPCLAWDPGHHPCLAW 93
GP HP H + D H + PG +P PG P + + PG P
Sbjct: 626 GPMHPDMHP-DMHPDMHPDMHADMHADMPMGPGMNPGPPMGPGGPPMMPYGPGDSPHSGM 684
Query: 94 DPDHHPTLAWDPGHHQHYARMIAH-----------HQRLLASAPGHH--PSHVL 134
P P + +Q M H L PG H P H L
Sbjct: 685 MPPIPPAQNFYENFYQQQEGMEMEPGLLGDAEDYGHYEELPGEPGEHLFPEHPL 738
>gi|22095349 WD and tetratricopeptide repeats 1 [Homo sapiens]
Length = 676
Score = 28.5 bits (62), Expect = 2.3
Identities = 16/53 (30%), Positives = 21/53 (39%), Gaps = 8/53 (15%)
Query: 66 GHHPCLAWDPGHHPCLAWDPGHHPCLAWDPDHHPTLAWDPGHHQHYARMIAHH 118
GH C+ CL W+ + D H T+ WDP HH+ M H
Sbjct: 45 GHSGCVN-------CLEWNEKGDLLASGSDDQH-TIVWDPLHHKKLLSMHTGH 89
>gi|33383239 protein kinase Myt1 isoform 2 [Homo sapiens]
Length = 480
Score = 28.5 bits (62), Expect = 2.3
Identities = 21/60 (35%), Positives = 25/60 (41%), Gaps = 18/60 (30%)
Query: 52 SKVLDHHPTLAWD-----PGHHPCLAWDPG--HHPC-LAW----------DPGHHPCLAW 93
S +LD + WD PGH PCLA P H P L+W G HP + W
Sbjct: 420 SLLLDSSLSSNWDDDSLGPGHPPCLACPPAGLHSPLRLSWPGLWGAPPPPGAGAHPGMPW 479
>gi|54792150 zinc finger protein 473 [Homo sapiens]
Length = 871
Score = 28.5 bits (62), Expect = 2.3
Identities = 11/24 (45%), Positives = 13/24 (54%)
Query: 86 GHHPCLAWDPDHHPTLAWDPGHHQ 109
G PC + D DH P+ PG HQ
Sbjct: 288 GEKPCKSQDSDHPPSHDTQPGEHQ 311
>gi|54792148 zinc finger protein 473 [Homo sapiens]
Length = 871
Score = 28.5 bits (62), Expect = 2.3
Identities = 11/24 (45%), Positives = 13/24 (54%)
Query: 86 GHHPCLAWDPDHHPTLAWDPGHHQ 109
G PC + D DH P+ PG HQ
Sbjct: 288 GEKPCKSQDSDHPPSHDTQPGEHQ 311
>gi|239753565 PREDICTED: hypothetical protein [Homo sapiens]
Length = 135
Score = 28.1 bits (61), Expect = 3.1
Identities = 15/45 (33%), Positives = 16/45 (35%)
Query: 59 PTLAWDPGHHPCLAWDPGHHPCLAWDPGHHPCLAWDPDHHPTLAW 103
P L P P L P P L P P L W DH +W
Sbjct: 59 PWLTLRPRRGPWLTLRPRRGPWLTLRPRRGPWLGWRSDHRGGRSW 103
>gi|239748093 PREDICTED: hypothetical protein XP_002346551 [Homo
sapiens]
Length = 135
Score = 28.1 bits (61), Expect = 3.1
Identities = 15/45 (33%), Positives = 16/45 (35%)
Query: 59 PTLAWDPGHHPCLAWDPGHHPCLAWDPGHHPCLAWDPDHHPTLAW 103
P L P P L P P L P P L W DH +W
Sbjct: 59 PWLTLRPRRGPWLTLRPRRGPWLTLRPRRGPWLGWRSDHRGGRSW 103
>gi|239741989 PREDICTED: hypothetical protein XP_002342387 [Homo
sapiens]
Length = 135
Score = 28.1 bits (61), Expect = 3.1
Identities = 15/45 (33%), Positives = 16/45 (35%)
Query: 59 PTLAWDPGHHPCLAWDPGHHPCLAWDPGHHPCLAWDPDHHPTLAW 103
P L P P L P P L P P L W DH +W
Sbjct: 59 PWLTLRPRRGPWLTLRPRRGPWLTLRPRRGPWLGWRSDHRGGRSW 103
>gi|56711322 ring finger protein 43 [Homo sapiens]
Length = 783
Score = 28.1 bits (61), Expect = 3.1
Identities = 33/110 (30%), Positives = 41/110 (37%), Gaps = 27/110 (24%)
Query: 47 HHRRSSKVLDHHPTLAWDPGHHPCLAWDPGHHPCLAWDPGHHPCLA--WDPDHHPTLAWD 104
H +R + PT PG P D HP P + P +A W P+ HP +
Sbjct: 651 HPQRKRRGGPSEPT----PGSRP---QDATVHPACQIFPHYTPSVAYPWSPEAHPLICGP 703
Query: 105 PGHHQHYARMIAHHQRLLASAPGHHPSHV----LVLCPHQLFASFLCPHP 150
PG +RLL PG S+ L L P Q L PHP
Sbjct: 704 PG----------LDKRLLPETPGPCYSNSQPVWLCLTPRQP----LEPHP 739
>gi|54112117 splicing factor 3b, subunit 1 isoform 1 [Homo sapiens]
Length = 1304
Score = 27.7 bits (60), Expect = 4.0
Identities = 22/54 (40%), Positives = 24/54 (44%), Gaps = 10/54 (18%)
Query: 62 AWD----PGHHPCLAWD--PGHHPCLAWDPGHHP-CLAWD--PDHHPTLAWDPG 106
+WD PGH P L WD PG + PG P WD P H P A PG
Sbjct: 217 SWDQAETPGHTPSLRWDETPGRAKG-SETPGATPGSKIWDPTPSHTPAGAATPG 269
>gi|148596936 hypoxia-inducible factor 1, alpha subunit inhibitor
[Homo sapiens]
Length = 349
Score = 27.3 bits (59), Expect = 5.2
Identities = 10/25 (40%), Positives = 13/25 (52%)
Query: 66 GHHPCLAWDPGHHPCLAWDPGHHPC 90
G+ C+ + P CL P HHPC
Sbjct: 212 GYKRCILFPPDQFECLYPYPVHHPC 236
>gi|156105693 PPAR-alpha interacting complex protein 285 isoform 1
[Homo sapiens]
Length = 2649
Score = 27.3 bits (59), Expect = 5.2
Identities = 12/29 (41%), Positives = 15/29 (51%)
Query: 19 HQHVLKGDHHPCFSKGPCHPLHHAWEFCH 47
H +V KG+ K P HP H+ FCH
Sbjct: 756 HFYVAKGNPIHARGKVPPHPRHYPLMFCH 784
>gi|156105695 PPAR-alpha interacting complex protein 285 isoform 2
[Homo sapiens]
Length = 2080
Score = 27.3 bits (59), Expect = 5.2
Identities = 12/29 (41%), Positives = 15/29 (51%)
Query: 19 HQHVLKGDHHPCFSKGPCHPLHHAWEFCH 47
H +V KG+ K P HP H+ FCH
Sbjct: 187 HFYVAKGNPIHARGKVPPHPRHYPLMFCH 215
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.326 0.141 0.561
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,903,242
Number of Sequences: 37866
Number of extensions: 466949
Number of successful extensions: 1720
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 1565
Number of HSP's gapped (non-prelim): 92
length of query: 153
length of database: 18,247,518
effective HSP length: 93
effective length of query: 60
effective length of database: 14,725,980
effective search space: 883558800
effective search space used: 883558800
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 57 (26.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.