Guide to the Human Genome
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Name: LOC100290957 Sequence: fasta or formatted (135aa) NCBI GI: 239748093
Description:

PREDICTED: hypothetical protein XP_002346551

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.1         11           3
 C cysteine            0.0          0           0
 D aspartate           2.2          3           1
 E glutamate           3.0          4           1
 F phenylalanine       0.7          1           1
 G glycine            14.8         20           2
 H histidine           0.7          1           1
 I isoleucine          0.0          0           0
 K lysine              0.7          1           1
 L leucine            17.8         24           3
 M methionine          0.7          1           1
 N asparagine          0.0          0           0
 P proline            11.1         15           2
 Q glutamine           0.0          0           0
 R arginine           17.8         24           2
 S serine              6.7          9           2
 T threonine           5.9          8           1
 V valine              0.7          1           1
 W tryptophan          8.9         12           1
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002346551 
LOC100293785          1.000   PREDICTED: hypothetical protein 
LOC100288488          1.000   PREDICTED: hypothetical protein XP_002342387 
EIF3A                 0.030   eukaryotic translation initiation factor 3, subunit 1...
LOC100291624          0.026   PREDICTED: hypothetical protein XP_002345876 
LOC100289712          0.026   PREDICTED: hypothetical protein XP_002346761 
LOC100287455          0.026   PREDICTED: hypothetical protein XP_002342583 
TRIM26                0.022   tripartite motif-containing 26 
ACD                   0.018   adrenocortical dysplasia homolog isoform 3 
ACD                   0.018   adrenocortical dysplasia homolog isoform 1 
ACD                   0.018   adrenocortical dysplasia homolog isoform 2 
DNAJC14               0.018   dopamine receptor interacting protein 
LOC100292088          0.018   PREDICTED: hypothetical protein XP_002346321 
LOC100291147          0.015   PREDICTED: hypothetical protein XP_002347883 
LOC100289560          0.015   PREDICTED: hypothetical protein XP_002344188 
ODF3                  0.015   outer dense fiber of sperm tails 3 
LTB4R2                0.011   leukotriene B4 receptor 2 
LOC100291998          0.011   PREDICTED: hypothetical protein XP_002344552 
LOC100130360          0.011   PREDICTED: hypothetical protein 
SYTL1                 0.011   synaptotagmin-like 1 
LOC100293024          0.011   PREDICTED: similar to hCG1812873 
LOC100293126          0.011   PREDICTED: hypothetical protein 
LOC100293536          0.011   PREDICTED: hypothetical protein 
LOC100291419          0.011   PREDICTED: hypothetical protein XP_002348050 
LOC100291150          0.011   PREDICTED: hypothetical protein XP_002347543 
LOC100289198          0.011   PREDICTED: hypothetical protein XP_002344213 
LOC100289439          0.011   PREDICTED: hypothetical protein XP_002342180 
C22orf26              0.011   hypothetical protein LOC55267 
GLB1L2                0.007   galactosidase, beta 1-like 2 
LOC100289252          0.007   PREDICTED: hypothetical protein XP_002342156 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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