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Search of human proteins with 239755159
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239755159 PREDICTED: similar to tubulin tyrosine ligase-like
family, member 11 a [Homo sapiens]
(259 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239755159 PREDICTED: similar to tubulin tyrosine ligase-like ... 533 e-152
gi|212720861 tubulin tyrosine ligase-like family, member 11 a [H... 447 e-126
gi|30840978 neuroligin 2 [Homo sapiens] 34 0.15
gi|78042577 MAP7 domain containing 1 [Homo sapiens] 33 0.19
gi|162329583 cleavage and polyadenylation specific factor 6, 68 ... 33 0.25
gi|5032069 splicing factor 3b, subunit 4 [Homo sapiens] 33 0.25
gi|117306167 proline-rich protein BstNI subfamily 3 precursor [H... 33 0.25
gi|126723060 zinc finger CCCH-type containing 4 [Homo sapiens] 33 0.32
gi|18959210 WIRE protein [Homo sapiens] 33 0.32
gi|28372567 zinc finger protein 575 [Homo sapiens] 32 0.55
gi|4507869 vasodilator-stimulated phosphoprotein [Homo sapiens] 32 0.72
gi|224458284 Rho GTPase activating protein 23 [Homo sapiens] 31 0.94
gi|239757987 PREDICTED: hypothetical protein [Homo sapiens] 31 0.94
gi|25470890 DAZ associated protein 1 isoform a [Homo sapiens] 31 0.94
gi|25470886 DAZ associated protein 1 isoform b [Homo sapiens] 31 0.94
gi|37537692 proline-rich protein BstNI subfamily 4 precursor [Ho... 31 0.94
gi|5031703 Ras-GTPase-activating protein SH3-domain-binding prot... 31 0.94
gi|38327552 Ras-GTPase-activating protein SH3-domain-binding pro... 31 0.94
gi|4885407 hyperpolarization activated cyclic nucleotide-gated p... 31 1.2
gi|4505405 glycoprotein (transmembrane) nmb isoform b precursor ... 31 1.2
gi|31542493 D site of albumin promoter (albumin D-box) binding p... 31 1.2
gi|239746104 PREDICTED: hypothetical protein XP_002344198 [Homo ... 31 1.2
gi|19924099 synapsin I isoform Ia [Homo sapiens] 31 1.2
gi|19924097 synapsin I isoform Ib [Homo sapiens] 31 1.2
gi|21955170 single stranded DNA binding protein 3 isoform a [Hom... 31 1.2
gi|21314684 single stranded DNA binding protein 3 isoform b [Hom... 31 1.2
gi|27437019 calcium/calmodulin-dependent protein kinase kinase 2... 30 1.6
gi|27437017 calcium/calmodulin-dependent protein kinase kinase 2... 30 1.6
gi|27437015 calcium/calmodulin-dependent protein kinase kinase 2... 30 1.6
gi|27437027 calcium/calmodulin-dependent protein kinase kinase 2... 30 1.6
>gi|239755159 PREDICTED: similar to tubulin tyrosine ligase-like
family, member 11 a [Homo sapiens]
Length = 259
Score = 533 bits (1372), Expect = e-152
Identities = 259/259 (100%), Positives = 259/259 (100%)
Query: 1 MLSEAGFVFNTCTAGIDRCASAAAKFSLTHYFILNREGGCQSRSQQLEKPFAGKEDALDG 60
MLSEAGFVFNTCTAGIDRCASAAAKFSLTHYFILNREGGCQSRSQQLEKPFAGKEDALDG
Sbjct: 1 MLSEAGFVFNTCTAGIDRCASAAAKFSLTHYFILNREGGCQSRSQQLEKPFAGKEDALDG 60
Query: 61 ELTSAPDCNANPEAHLPSICLKQVFPKYAKQFNYLRLVDRMANLFIRFLGIKGTMKLGPT 120
ELTSAPDCNANPEAHLPSICLKQVFPKYAKQFNYLRLVDRMANLFIRFLGIKGTMKLGPT
Sbjct: 61 ELTSAPDCNANPEAHLPSICLKQVFPKYAKQFNYLRLVDRMANLFIRFLGIKGTMKLGPT 120
Query: 121 GFRTFIRSCKLSSSSLSMAAVDILYIDITRRWNSMTLDQRDSGMCLQAFVEAFFFLAQRK 180
GFRTFIRSCKLSSSSLSMAAVDILYIDITRRWNSMTLDQRDSGMCLQAFVEAFFFLAQRK
Sbjct: 121 GFRTFIRSCKLSSSSLSMAAVDILYIDITRRWNSMTLDQRDSGMCLQAFVEAFFFLAQRK 180
Query: 181 FKMLPLHEQVASLIDLCEYHLSLLDEKRLVCGRGVPSGGRPPHRGPPQEPSPSAQPAGDN 240
FKMLPLHEQVASLIDLCEYHLSLLDEKRLVCGRGVPSGGRPPHRGPPQEPSPSAQPAGDN
Sbjct: 181 FKMLPLHEQVASLIDLCEYHLSLLDEKRLVCGRGVPSGGRPPHRGPPQEPSPSAQPAGDN 240
Query: 241 PPPRTSCANKLSHPRHTLS 259
PPPRTSCANKLSHPRHTLS
Sbjct: 241 PPPRTSCANKLSHPRHTLS 259
>gi|212720861 tubulin tyrosine ligase-like family, member 11 a [Homo
sapiens]
Length = 800
Score = 447 bits (1149), Expect = e-126
Identities = 216/219 (98%), Positives = 219/219 (100%)
Query: 41 QSRSQQLEKPFAGKEDALDGELTSAPDCNANPEAHLPSICLKQVFPKYAKQFNYLRLVDR 100
+++SQQLEKPFAGKEDALDGELTSAPDCNANPEAHLPSICLKQVFPKYAKQFNYLRLVDR
Sbjct: 582 ENQSQQLEKPFAGKEDALDGELTSAPDCNANPEAHLPSICLKQVFPKYAKQFNYLRLVDR 641
Query: 101 MANLFIRFLGIKGTMKLGPTGFRTFIRSCKLSSSSLSMAAVDILYIDITRRWNSMTLDQR 160
MANLFIRFLGIKGTMKLGPTGFRTFIRSCKLSSSSLSMAAVDILYIDITRRWNSMTLDQR
Sbjct: 642 MANLFIRFLGIKGTMKLGPTGFRTFIRSCKLSSSSLSMAAVDILYIDITRRWNSMTLDQR 701
Query: 161 DSGMCLQAFVEAFFFLAQRKFKMLPLHEQVASLIDLCEYHLSLLDEKRLVCGRGVPSGGR 220
DSGMCLQAFVEAFFFLAQRKFKMLPLHEQVASLIDLCEYHLSLLDEKRLVCGRGVPSGGR
Sbjct: 702 DSGMCLQAFVEAFFFLAQRKFKMLPLHEQVASLIDLCEYHLSLLDEKRLVCGRGVPSGGR 761
Query: 221 PPHRGPPQEPSPSAQPAGDNPPPRTSCANKLSHPRHTLS 259
PPHRGPPQEPSPSAQPAGDNPPPRTSCANKLSHPRHTLS
Sbjct: 762 PPHRGPPQEPSPSAQPAGDNPPPRTSCANKLSHPRHTLS 800
>gi|30840978 neuroligin 2 [Homo sapiens]
Length = 835
Score = 33.9 bits (76), Expect = 0.15
Identities = 21/46 (45%), Positives = 22/46 (47%), Gaps = 7/46 (15%)
Query: 215 VPSGGRPPHRGPPQEPSPSAQPAGDNPPP---RTSCANKLSHPRHT 257
+PSG PP P P PS P G PPP TS N L HP T
Sbjct: 791 LPSGLGPP----PPPPPPSLHPFGPFPPPPPTATSHNNTLPHPHST 832
>gi|78042577 MAP7 domain containing 1 [Homo sapiens]
Length = 841
Score = 33.5 bits (75), Expect = 0.19
Identities = 18/44 (40%), Positives = 24/44 (54%), Gaps = 4/44 (9%)
Query: 216 PSGGRPPHRGPPQEPSPSAQPAGDNPPPRTSCANKLSHPRHTLS 259
P RPP R +PSP+A PA D+PP + K + RH L+
Sbjct: 103 PRDARPPRRS--SQPSPTAVPASDSPPTKQEV--KKAGERHKLA 142
Score = 30.0 bits (66), Expect = 2.1
Identities = 15/42 (35%), Positives = 18/42 (42%)
Query: 216 PSGGRPPHRGPPQEPSPSAQPAGDNPPPRTSCANKLSHPRHT 257
PSG P PPQE SPS++ P P PR +
Sbjct: 71 PSGQVGPRPAPPQEESPSSEAKSRGPTPPAMGPRDARPPRRS 112
>gi|162329583 cleavage and polyadenylation specific factor 6, 68 kD
subunit [Homo sapiens]
Length = 551
Score = 33.1 bits (74), Expect = 0.25
Identities = 17/37 (45%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Query: 210 VCGRGVPSGGRPPHRGPPQEPSP-SAQPAGDNPPPRT 245
V G G P G PP +GPP P P +P G PP T
Sbjct: 300 VPGYGPPPGPPPPQQGPPPPPGPFPPRPPGPLGPPLT 336
>gi|5032069 splicing factor 3b, subunit 4 [Homo sapiens]
Length = 424
Score = 33.1 bits (74), Expect = 0.25
Identities = 16/38 (42%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Query: 217 SGGRPPHRGPPQEPSPSAQPAGDNPPPRTSCANKLSHP 254
SGG+PP R PP P P P G PP + + HP
Sbjct: 329 SGGQPPPRPPPGMPHPGPPPMG-MPPRGPPFGSPMGHP 365
>gi|117306167 proline-rich protein BstNI subfamily 3 precursor [Homo
sapiens]
Length = 309
Score = 33.1 bits (74), Expect = 0.25
Identities = 14/31 (45%), Positives = 15/31 (48%)
Query: 214 GVPSGGRPPHRGPPQEPSPSAQPAGDNPPPR 244
G S G PPH G P+ P P PPPR
Sbjct: 170 GNQSQGPPPHPGKPEGPPPQGGNQSQGPPPR 200
Score = 30.0 bits (66), Expect = 2.1
Identities = 13/31 (41%), Positives = 14/31 (45%)
Query: 214 GVPSGGRPPHRGPPQEPSPSAQPAGDNPPPR 244
G S G PP G P+ P P PPPR
Sbjct: 65 GNQSQGPPPRPGKPEGPPPQGGNQSQGPPPR 95
Score = 30.0 bits (66), Expect = 2.1
Identities = 13/31 (41%), Positives = 14/31 (45%)
Query: 214 GVPSGGRPPHRGPPQEPSPSAQPAGDNPPPR 244
G S G PP G P+ P P PPPR
Sbjct: 107 GNQSQGPPPRPGKPEGPPPQGGNQSQGPPPR 137
Score = 30.0 bits (66), Expect = 2.1
Identities = 13/31 (41%), Positives = 14/31 (45%)
Query: 214 GVPSGGRPPHRGPPQEPSPSAQPAGDNPPPR 244
G S G PP G P+ P P PPPR
Sbjct: 128 GNQSQGPPPRPGKPEGPPPQGGNQSQGPPPR 158
Score = 30.0 bits (66), Expect = 2.1
Identities = 13/31 (41%), Positives = 14/31 (45%)
Query: 214 GVPSGGRPPHRGPPQEPSPSAQPAGDNPPPR 244
G S G PP G P+ P P PPPR
Sbjct: 191 GNQSQGPPPRPGKPEGPPPQGGNQSQGPPPR 221
Score = 30.0 bits (66), Expect = 2.1
Identities = 14/32 (43%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Query: 214 GVPSGGRPPHRGPPQE-PSPSAQPAGDNPPPR 244
G P G PP P Q P P+ +P G PPP+
Sbjct: 264 GRPQGPPPPGGNPQQPLPPPAGKPQGPPPPPQ 295
Score = 29.6 bits (65), Expect = 2.7
Identities = 12/25 (48%), Positives = 12/25 (48%)
Query: 219 GRPPHRGPPQEPSPSAQPAGDNPPP 243
G PPH G PQ P P PPP
Sbjct: 238 GPPPHPGKPQGPPPQEGNKPQRPPP 262
Score = 29.3 bits (64), Expect = 3.6
Identities = 12/29 (41%), Positives = 13/29 (44%)
Query: 214 GVPSGGRPPHRGPPQEPSPSAQPAGDNPP 242
G P G P PQ P P +P G PP
Sbjct: 244 GKPQGPPPQEGNKPQRPPPPGRPQGPPPP 272
Score = 28.5 bits (62), Expect = 6.1
Identities = 13/34 (38%), Positives = 14/34 (41%), Gaps = 5/34 (14%)
Query: 216 PSGGRPPHRGPPQEPSPSAQP-----AGDNPPPR 244
P GG P R PP P +P PPPR
Sbjct: 41 PQGGNQPQRTPPPPGKPEGRPPQGGNQSQGPPPR 74
Score = 28.1 bits (61), Expect = 8.0
Identities = 12/30 (40%), Positives = 13/30 (43%)
Query: 214 GVPSGGRPPHRGPPQEPSPSAQPAGDNPPP 243
G S G PP G P+ P P PPP
Sbjct: 149 GNQSQGPPPRPGKPEGPPPQGGNQSQGPPP 178
>gi|126723060 zinc finger CCCH-type containing 4 [Homo sapiens]
Length = 1303
Score = 32.7 bits (73), Expect = 0.32
Identities = 13/30 (43%), Positives = 18/30 (60%)
Query: 217 SGGRPPHRGPPQEPSPSAQPAGDNPPPRTS 246
+ R GP + PSP+A P+GD PP T+
Sbjct: 1090 ASSRAAKPGPAEAPSPTASPSGDASPPATA 1119
>gi|18959210 WIRE protein [Homo sapiens]
Length = 440
Score = 32.7 bits (73), Expect = 0.32
Identities = 15/26 (57%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
Query: 218 GGRPPHRGPPQEPSPSAQPAGDNPPP 243
G PP RG P P PS PAG PPP
Sbjct: 350 GSEPPSRGKP-PPPPSRTPAGPPPPP 374
>gi|28372567 zinc finger protein 575 [Homo sapiens]
Length = 245
Score = 32.0 bits (71), Expect = 0.55
Identities = 18/38 (47%), Positives = 21/38 (55%), Gaps = 9/38 (23%)
Query: 216 PSGGRP-----PHRGPPQEPSPSA----QPAGDNPPPR 244
P+G P PH+GPPQ+PS SA AG P PR
Sbjct: 17 PTGKEPVTKEAPHQGPPQKPSQSAPGPTASAGSPPRPR 54
>gi|4507869 vasodilator-stimulated phosphoprotein [Homo sapiens]
Length = 380
Score = 31.6 bits (70), Expect = 0.72
Identities = 16/41 (39%), Positives = 17/41 (41%), Gaps = 13/41 (31%)
Query: 216 PSGGRPPHRGPPQEPSPSAQP-------------AGDNPPP 243
P+GG PP GPP P P P AG PPP
Sbjct: 166 PAGGPPPPPGPPPPPGPPPPPGLPPSGVPAAAHGAGGGPPP 206
Score = 28.5 bits (62), Expect = 6.1
Identities = 16/38 (42%), Positives = 19/38 (50%), Gaps = 4/38 (10%)
Query: 206 EKRLVCGRGVPSGGRPPHRGPPQEPSPSAQPAGDNPPP 243
E+R+ G P+ PP GPP P P P G PPP
Sbjct: 153 ERRVSNAGGPPA---PPAGGPPPPPGP-PPPPGPPPPP 186
>gi|224458284 Rho GTPase activating protein 23 [Homo sapiens]
Length = 1397
Score = 31.2 bits (69), Expect = 0.94
Identities = 18/51 (35%), Positives = 21/51 (41%), Gaps = 1/51 (1%)
Query: 204 LDEKRLVCGRGVPSGGRPPH-RGPPQEPSPSAQPAGDNPPPRTSCANKLSH 253
LD L + PS G PH P+ P +P PP R C LSH
Sbjct: 146 LDNSSLGMSQPRPSPGAFPHLSSEPRTPRAFPEPGSRVPPSRLECQQALSH 196
>gi|239757987 PREDICTED: hypothetical protein [Homo sapiens]
Length = 445
Score = 31.2 bits (69), Expect = 0.94
Identities = 16/43 (37%), Positives = 21/43 (48%)
Query: 200 HLSLLDEKRLVCGRGVPSGGRPPHRGPPQEPSPSAQPAGDNPP 242
H + E +L G V +G PP R PP P P +PA + P
Sbjct: 205 HRAATAEHQLGAGFSVRNGPGPPARLPPAPPGPPLRPARPHNP 247
>gi|25470890 DAZ associated protein 1 isoform a [Homo sapiens]
Length = 378
Score = 31.2 bits (69), Expect = 0.94
Identities = 19/47 (40%), Positives = 21/47 (44%), Gaps = 5/47 (10%)
Query: 213 RGVPSG-GRPPH----RGPPQEPSPSAQPAGDNPPPRTSCANKLSHP 254
+G P G G PP GPP P P G PPP T A L+ P
Sbjct: 278 QGFPQGYGAPPQFSFGYGPPPPPPDQFAPPGVPPPPATPGAAPLAFP 324
>gi|25470886 DAZ associated protein 1 isoform b [Homo sapiens]
Length = 407
Score = 31.2 bits (69), Expect = 0.94
Identities = 19/47 (40%), Positives = 21/47 (44%), Gaps = 5/47 (10%)
Query: 213 RGVPSG-GRPPH----RGPPQEPSPSAQPAGDNPPPRTSCANKLSHP 254
+G P G G PP GPP P P G PPP T A L+ P
Sbjct: 278 QGFPQGYGAPPQFSFGYGPPPPPPDQFAPPGVPPPPATPGAAPLAFP 324
>gi|37537692 proline-rich protein BstNI subfamily 4 precursor [Homo
sapiens]
Length = 247
Score = 31.2 bits (69), Expect = 0.94
Identities = 15/32 (46%), Positives = 16/32 (50%), Gaps = 2/32 (6%)
Query: 214 GVPSGGRPPHRGPPQEPSPSA--QPAGDNPPP 243
G S G PPH G P+ P P Q G PPP
Sbjct: 86 GNQSQGPPPHPGKPERPPPQGGNQSQGTPPPP 117
Score = 30.0 bits (66), Expect = 2.1
Identities = 13/28 (46%), Positives = 17/28 (60%), Gaps = 2/28 (7%)
Query: 219 GRPPHRGPPQEPS--PSAQPAGDNPPPR 244
G PP G PQ+P P+ +P G PPP+
Sbjct: 205 GPPPAGGNPQQPQAPPAGKPQGPPPPPQ 232
Score = 28.1 bits (61), Expect = 8.0
Identities = 12/30 (40%), Positives = 13/30 (43%)
Query: 214 GVPSGGRPPHRGPPQEPSPSAQPAGDNPPP 243
G S G PP G P+ P P PPP
Sbjct: 107 GNQSQGTPPPPGKPERPPPQGGNQSHRPPP 136
>gi|5031703 Ras-GTPase-activating protein SH3-domain-binding protein
[Homo sapiens]
Length = 466
Score = 31.2 bits (69), Expect = 0.94
Identities = 17/52 (32%), Positives = 24/52 (46%), Gaps = 2/52 (3%)
Query: 195 DLCEYHLSLLDEKRLVCGRGVPSGGRPPH--RGPPQEPSPSAQPAGDNPPPR 244
DL + + + K L VP G PPH + P +P P ++P PP R
Sbjct: 245 DLRTFSWASVTSKNLPPSGAVPVTGIPPHVVKVPASQPRPESKPESQIPPQR 296
>gi|38327552 Ras-GTPase-activating protein SH3-domain-binding
protein [Homo sapiens]
Length = 466
Score = 31.2 bits (69), Expect = 0.94
Identities = 17/52 (32%), Positives = 24/52 (46%), Gaps = 2/52 (3%)
Query: 195 DLCEYHLSLLDEKRLVCGRGVPSGGRPPH--RGPPQEPSPSAQPAGDNPPPR 244
DL + + + K L VP G PPH + P +P P ++P PP R
Sbjct: 245 DLRTFSWASVTSKNLPPSGAVPVTGIPPHVVKVPASQPRPESKPESQIPPQR 296
>gi|4885407 hyperpolarization activated cyclic nucleotide-gated
potassium channel 4 [Homo sapiens]
Length = 1203
Score = 30.8 bits (68), Expect = 1.2
Identities = 17/43 (39%), Positives = 22/43 (51%), Gaps = 3/43 (6%)
Query: 205 DEKRLVC-GRGVPSGGRPPH--RGPPQEPSPSAQPAGDNPPPR 244
+E+RL+ G P R P P+ P SAQPA PPP+
Sbjct: 127 EERRLIAEGDASPGEDRTPPGLAAEPERPGASAQPAASPPPPQ 169
>gi|4505405 glycoprotein (transmembrane) nmb isoform b precursor
[Homo sapiens]
Length = 560
Score = 30.8 bits (68), Expect = 1.2
Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 6/45 (13%)
Query: 221 PPHRGPPQEPSPSAQPAGDNP------PPRTSCANKLSHPRHTLS 259
PP P +P+PS PAGDNP P N+ H + T++
Sbjct: 326 PPPPPRPSKPTPSLGPAGDNPLELSRIPDENCQINRYGHFQATIT 370
>gi|31542493 D site of albumin promoter (albumin D-box) binding
protein [Homo sapiens]
Length = 325
Score = 30.8 bits (68), Expect = 1.2
Identities = 15/36 (41%), Positives = 17/36 (47%)
Query: 221 PPHRGPPQEPSPSAQPAGDNPPPRTSCANKLSHPRH 256
PP GP EPSP+ PA P A+ S P H
Sbjct: 133 PPPGGPSPEPSPARTPAPSPGPGSCGSASPRSSPGH 168
>gi|239746104 PREDICTED: hypothetical protein XP_002344198 [Homo
sapiens]
Length = 398
Score = 30.8 bits (68), Expect = 1.2
Identities = 18/45 (40%), Positives = 22/45 (48%), Gaps = 3/45 (6%)
Query: 200 HLSLLDEKRLVCGRGVPSGGRPPHRGPPQEPSPSAQPAGDNPPPR 244
H + E +L G V +G PP R PP P P +PA PPR
Sbjct: 158 HRAAAAEHQLGAGFSVRNGPGPPARLPPAPPGPLLRPA---RPPR 199
>gi|19924099 synapsin I isoform Ia [Homo sapiens]
Length = 705
Score = 30.8 bits (68), Expect = 1.2
Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
Query: 220 RPPHRGPPQEPSP--SAQPAGDNPPPRTSCANKLSHPR 255
RP GP P P + +P+ D PPP T+ A HP+
Sbjct: 622 RPSGPGPAGRPKPQLAQKPSQDVPPPATAAAGGPPHPQ 659
Score = 30.4 bits (67), Expect = 1.6
Identities = 14/35 (40%), Positives = 18/35 (51%), Gaps = 4/35 (11%)
Query: 214 GVPSGGRPPHRGPPQEPSPSAQ----PAGDNPPPR 244
G P+ RPP +G P +P P Q P PPP+
Sbjct: 454 GPPAQQRPPPQGGPPQPGPGPQRQGPPLQQRPPPQ 488
Score = 28.1 bits (61), Expect = 8.0
Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 5/36 (13%)
Query: 214 GVPSGGRPPHRGPPQEP----SPSAQPAGDNPPPRT 245
G P GG+ +GPPQ+P P+ Q + P PRT
Sbjct: 579 GAPPGGQQ-RQGPPQKPPGPAGPTRQASQAGPVPRT 613
>gi|19924097 synapsin I isoform Ib [Homo sapiens]
Length = 669
Score = 30.8 bits (68), Expect = 1.2
Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
Query: 220 RPPHRGPPQEPSP--SAQPAGDNPPPRTSCANKLSHPR 255
RP GP P P + +P+ D PPP T+ A HP+
Sbjct: 622 RPSGPGPAGRPKPQLAQKPSQDVPPPATAAAGGPPHPQ 659
Score = 30.4 bits (67), Expect = 1.6
Identities = 14/35 (40%), Positives = 18/35 (51%), Gaps = 4/35 (11%)
Query: 214 GVPSGGRPPHRGPPQEPSPSAQ----PAGDNPPPR 244
G P+ RPP +G P +P P Q P PPP+
Sbjct: 454 GPPAQQRPPPQGGPPQPGPGPQRQGPPLQQRPPPQ 488
Score = 28.1 bits (61), Expect = 8.0
Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 5/36 (13%)
Query: 214 GVPSGGRPPHRGPPQEP----SPSAQPAGDNPPPRT 245
G P GG+ +GPPQ+P P+ Q + P PRT
Sbjct: 579 GAPPGGQQ-RQGPPQKPPGPAGPTRQASQAGPVPRT 613
>gi|21955170 single stranded DNA binding protein 3 isoform a [Homo
sapiens]
Length = 388
Score = 30.8 bits (68), Expect = 1.2
Identities = 16/31 (51%), Positives = 19/31 (61%), Gaps = 3/31 (9%)
Query: 214 GVPSGGRPP--HRGPP-QEPSPSAQPAGDNP 241
G+P G PP +GPP +PSP AQP NP
Sbjct: 110 GMPGGPIPPGFFQGPPGSQPSPHAQPPPHNP 140
>gi|21314684 single stranded DNA binding protein 3 isoform b [Homo
sapiens]
Length = 368
Score = 30.8 bits (68), Expect = 1.2
Identities = 16/31 (51%), Positives = 19/31 (61%), Gaps = 3/31 (9%)
Query: 214 GVPSGGRPP--HRGPP-QEPSPSAQPAGDNP 241
G+P G PP +GPP +PSP AQP NP
Sbjct: 110 GMPGGPIPPGFFQGPPGSQPSPHAQPPPHNP 140
>gi|27437019 calcium/calmodulin-dependent protein kinase kinase 2
beta isoform 4 [Homo sapiens]
Length = 498
Score = 30.4 bits (67), Expect = 1.6
Identities = 19/58 (32%), Positives = 26/58 (44%), Gaps = 4/58 (6%)
Query: 199 YHLSLLDEKRLVCGRGVPSGGRPPHRGPPQEPSPSAQPAG--DNPPPRTSCANKLSHP 254
Y + +L +K+L+ G P RPP RG P QP G + + KL HP
Sbjct: 191 YAMKVLSKKKLIRQAGFPR--RPPPRGTRPAPGGCIQPRGPIEQVYQEIAILKKLDHP 246
>gi|27437017 calcium/calmodulin-dependent protein kinase kinase 2
beta isoform 2 [Homo sapiens]
Length = 541
Score = 30.4 bits (67), Expect = 1.6
Identities = 19/58 (32%), Positives = 26/58 (44%), Gaps = 4/58 (6%)
Query: 199 YHLSLLDEKRLVCGRGVPSGGRPPHRGPPQEPSPSAQPAG--DNPPPRTSCANKLSHP 254
Y + +L +K+L+ G P RPP RG P QP G + + KL HP
Sbjct: 191 YAMKVLSKKKLIRQAGFPR--RPPPRGTRPAPGGCIQPRGPIEQVYQEIAILKKLDHP 246
>gi|27437015 calcium/calmodulin-dependent protein kinase kinase 2
beta isoform 1 [Homo sapiens]
Length = 588
Score = 30.4 bits (67), Expect = 1.6
Identities = 19/58 (32%), Positives = 26/58 (44%), Gaps = 4/58 (6%)
Query: 199 YHLSLLDEKRLVCGRGVPSGGRPPHRGPPQEPSPSAQPAG--DNPPPRTSCANKLSHP 254
Y + +L +K+L+ G P RPP RG P QP G + + KL HP
Sbjct: 191 YAMKVLSKKKLIRQAGFPR--RPPPRGTRPAPGGCIQPRGPIEQVYQEIAILKKLDHP 246
>gi|27437027 calcium/calmodulin-dependent protein kinase kinase 2
beta isoform 2 [Homo sapiens]
Length = 541
Score = 30.4 bits (67), Expect = 1.6
Identities = 19/58 (32%), Positives = 26/58 (44%), Gaps = 4/58 (6%)
Query: 199 YHLSLLDEKRLVCGRGVPSGGRPPHRGPPQEPSPSAQPAG--DNPPPRTSCANKLSHP 254
Y + +L +K+L+ G P RPP RG P QP G + + KL HP
Sbjct: 191 YAMKVLSKKKLIRQAGFPR--RPPPRGTRPAPGGCIQPRGPIEQVYQEIAILKKLDHP 246
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.323 0.137 0.422
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,565,374
Number of Sequences: 37866
Number of extensions: 618440
Number of successful extensions: 6173
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 60
Number of HSP's successfully gapped in prelim test: 99
Number of HSP's that attempted gapping in prelim test: 5498
Number of HSP's gapped (non-prelim): 771
length of query: 259
length of database: 18,247,518
effective HSP length: 100
effective length of query: 159
effective length of database: 14,460,918
effective search space: 2299285962
effective search space used: 2299285962
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.