Guide to the Human Genome
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Name: LOC100292686 Sequence: fasta or formatted (184aa) NCBI GI: 239754969
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            10.3         19           2
 C cysteine            3.3          6           2
 D aspartate           3.8          7           1
 E glutamate           2.7          5           1
 F phenylalanine       3.8          7           1
 G glycine             8.7         16           2
 H histidine           3.3          6           1
 I isoleucine          1.1          2           1
 K lysine              1.6          3           1
 L leucine             9.8         18           3
 M methionine          1.1          2           1
 N asparagine          1.1          2           1
 P proline            16.3         30           2
 Q glutamine           6.0         11           2
 R arginine            4.9          9           1
 S serine              8.7         16           2
 T threonine           4.9          9           1
 V valine              5.4         10           2
 W tryptophan          2.7          5           1
 Y tyrosine            0.5          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100287098          1.000   PREDICTED: hypothetical protein 
LOC100287098          1.000   PREDICTED: hypothetical protein XP_002342923 
MAP3K15               0.051   mitogen-activated protein kinase kinase kinase 15 [...
LOC100128260          0.046   PREDICTED: hCG_1742852 
LOC100128260          0.046   PREDICTED: hCG_1742852 
C16orf89              0.040   hypothetical protein LOC146556 isoform 1 
ITGB1                 0.040   integrin beta 1 isoform 1C-1 precursor 
ITGB1                 0.040   integrin beta 1 isoform 1C-2 precursor 
LOC100288773          0.040   PREDICTED: hypothetical protein XP_002343911 
LOC100128260          0.040   PREDICTED: hCG_1742852 
UTY                   0.038   tetratricopeptide repeat protein isoform 1 
SEPSECS               0.035   Sep (O-phosphoserine) tRNA:Sec (selenocysteine) tRN...
IFNAR2                0.032   interferon alpha/beta receptor 2 isoform b precursor...
IFNAR2                0.032   interferon alpha/beta receptor 2 isoform b precursor...
C12orf53              0.032   hypothetical protein LOC196500 
WNK2                  0.030   WNK lysine deficient protein kinase 2 
MUC6                  0.027   mucin 6, gastric 
MKL1                  0.027   megakaryoblastic leukemia 1 protein 
SYN1                  0.027   synapsin I isoform Ia 
SYN1                  0.027   synapsin I isoform Ib 
PPP1R14D              0.024   protein phosphatase 1, regulatory subunit 14D isofo...
CHST2                 0.024   carbohydrate (N-acetylglucosamine-6-O) sulfotransfer...
TMEM108               0.022   transmembrane protein 108 
TMEM108               0.022   transmembrane protein 108 
VPS37C                0.022   vacuolar protein sorting 37C 
ZNF283                0.022   zinc finger protein 283 
DIAPH2                0.022   diaphanous 2 isoform 12C 
DIAPH2                0.022   diaphanous 2 isoform 156 
MED25                 0.022   mediator complex subunit 25 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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