Guide to the Human Genome
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Name: SEPSECS Sequence: fasta or formatted (500aa) NCBI GI: 228480284
Description:

Sep (O-phosphoserine) tRNA:Sec (selenocysteine) tRNA synthase isoform 3

Referenced in:

Liver
Selenium Proteins

Other entries for this name:
alt prot [501aa] Sep (O-phosphoserine) tRNA:Sec (selenocysteine) tRNA synthase iso...
alt prot [422aa] Sep (O-phosphoserine) tRNA:Sec (selenocysteine) tRNA synthase iso...
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.2         36           2
 C cysteine            2.8         14           1
 D aspartate           6.0         30           2
 E glutamate           5.0         25           2
 F phenylalanine       3.8         19           1
 G glycine             6.4         32           2
 H histidine           2.6         13           1
 I isoleucine          5.8         29           2
 K lysine              5.8         29           2
 L leucine            10.6         53           2
 M methionine          3.2         16           1
 N asparagine          4.4         22           2
 P proline             5.4         27           4
 Q glutamine           3.2         16           2
 R arginine            5.4         27           2
 S serine              8.2         41           2
 T threonine           4.4         22           2
 V valine              6.4         32           2
 W tryptophan          0.6          3           1
 Y tyrosine            2.8         14           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   Sep (O-phosphoserine) tRNA:Sec (selenocysteine) tRN... 
SEPSECS               0.914   Sep (O-phosphoserine) tRNA:Sec (selenocysteine) tRN...
SEPSECS               0.805   Sep (O-phosphoserine) tRNA:Sec (selenocysteine) tRN...
LOC100128682          0.045   PREDICTED: hypothetical protein LOC100128682 
LOC100128682          0.045   PREDICTED: hypothetical protein LOC100128682 
LOC100128682          0.045   PREDICTED: hypothetical protein LOC100128682 
LOC100128260          0.033   PREDICTED: hCG_1742852 
LOC100128260          0.033   PREDICTED: hCG_1742852 
C16orf89              0.032   hypothetical protein LOC146556 isoform 1 
LOC100288773          0.030   PREDICTED: hypothetical protein XP_002343911 
LOC100128260          0.030   PREDICTED: hCG_1742852 
UTY                   0.030   tetratricopeptide repeat protein isoform 1 
ZNF283                0.026   zinc finger protein 283 
MAP3K15               0.022   mitogen-activated protein kinase kinase kinase 15 [...
ECD                   0.022   suppressor of S. cerevisiae gcr2 isoform 2 
BEND2                 0.019   BEN domain containing 2 
ITGB1                 0.016   integrin beta 1 isoform 1C-1 precursor 
ITGB1                 0.016   integrin beta 1 isoform 1C-2 precursor 
PPIL3                 0.016   peptidylprolyl isomerase-like 3 isoform PPIL3a [Homo...
LOC100292686          0.013   PREDICTED: hypothetical protein 
LOC100287098          0.013   PREDICTED: hypothetical protein 
LOC100287098          0.013   PREDICTED: hypothetical protein XP_002342923 
PPP1R14D              0.011   protein phosphatase 1, regulatory subunit 14D isofo...
CCDC110               0.010   coiled-coil domain containing 110 isoform b 
CCDC110               0.010   coiled-coil domain containing 110 isoform a 
CSF2RA                0.010   colony stimulating factor 2 receptor alpha chain is...
ZNF573                0.009   zinc finger protein 573 
IFNAR2                0.007   interferon alpha/beta receptor 2 isoform b precursor...
IFNAR2                0.007   interferon alpha/beta receptor 2 isoform b precursor...
LOC100287104          0.007   PREDICTED: hypothetical protein XP_002343630 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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