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Search of human proteins with 239754873
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239754873 PREDICTED: similar to hCG2040393 [Homo sapiens]
(333 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239754873 PREDICTED: similar to hCG2040393 [Homo sapiens] 721 0.0
gi|239749412 PREDICTED: hypothetical protein XP_002347031 [Homo ... 721 0.0
gi|239743547 PREDICTED: hypothetical protein XP_002342883 [Homo ... 721 0.0
gi|134254450 patched isoform S [Homo sapiens] 92 6e-19
gi|134254435 patched isoform S [Homo sapiens] 92 6e-19
gi|134254468 patched isoform S [Homo sapiens] 92 6e-19
gi|134254452 patched isoform S [Homo sapiens] 92 6e-19
gi|134254432 patched isoform L' [Homo sapiens] 92 6e-19
gi|134254466 patched isoform M [Homo sapiens] 92 6e-19
gi|134254446 patched isoform L [Homo sapiens] 92 6e-19
gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens] 55 7e-08
gi|37537692 proline-rich protein BstNI subfamily 4 precursor [Ho... 55 7e-08
gi|41349482 proline-rich protein BstNI subfamily 1 isoform 1 pre... 53 4e-07
gi|117306167 proline-rich protein BstNI subfamily 3 precursor [H... 50 2e-06
gi|116284398 WAS/WASL interacting protein family, member 1 [Homo... 49 6e-06
gi|38373695 WAS/WASL interacting protein family, member 1 [Homo ... 49 6e-06
gi|209571537 proline-rich protein BstNI subfamily 2 [Homo sapiens] 49 8e-06
gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens] 48 1e-05
gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Hom... 48 1e-05
gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Hom... 48 1e-05
gi|119829187 alpha 1 type XVII collagen [Homo sapiens] 48 1e-05
gi|41349486 proline-rich protein BstNI subfamily 1 isoform 3 pre... 48 1e-05
gi|51702526 Wiskott-Aldrich syndrome gene-like protein [Homo sap... 47 2e-05
gi|41349484 proline-rich protein BstNI subfamily 1 isoform 2 pre... 47 2e-05
gi|32140760 collagen, type XXVII, alpha 1 [Homo sapiens] 47 3e-05
gi|4826998 splicing factor proline/glutamine rich (polypyrimidin... 47 3e-05
gi|163965366 nascent polypeptide-associated complex alpha subuni... 47 3e-05
gi|11386161 alpha 2 type IX collagen [Homo sapiens] 46 4e-05
gi|112382226 atrophin-1 like protein isoform b [Homo sapiens] 46 4e-05
gi|112382224 atrophin-1 like protein isoform a [Homo sapiens] 46 4e-05
>gi|239754873 PREDICTED: similar to hCG2040393 [Homo sapiens]
Length = 333
Score = 721 bits (1862), Expect = 0.0
Identities = 333/333 (100%), Positives = 333/333 (100%)
Query: 1 MEGVLFFFFHLIYSITEPLQPLHAAHTRHSPWVREPEQRHSETGWFRGLCRSTGKRRPGH 60
MEGVLFFFFHLIYSITEPLQPLHAAHTRHSPWVREPEQRHSETGWFRGLCRSTGKRRPGH
Sbjct: 1 MEGVLFFFFHLIYSITEPLQPLHAAHTRHSPWVREPEQRHSETGWFRGLCRSTGKRRPGH 60
Query: 61 TAPRTQQPKPSGPSSHPREPPLPGAVTGGSLHFQEPPPLGAATAGSRHRQKPPSPGSRHR 120
TAPRTQQPKPSGPSSHPREPPLPGAVTGGSLHFQEPPPLGAATAGSRHRQKPPSPGSRHR
Sbjct: 61 TAPRTQQPKPSGPSSHPREPPLPGAVTGGSLHFQEPPPLGAATAGSRHRQKPPSPGSRHR 120
Query: 121 WEPPPPGAATATGSRHRREPPSPGATTAGSCHLRSSGSTGTRRAPSHPAALQVPYTREGP 180
WEPPPPGAATATGSRHRREPPSPGATTAGSCHLRSSGSTGTRRAPSHPAALQVPYTREGP
Sbjct: 121 WEPPPPGAATATGSRHRREPPSPGATTAGSCHLRSSGSTGTRRAPSHPAALQVPYTREGP 180
Query: 181 REPTPPAGPQGFAGSFCAEGSRRGAEVGWGKLEPQGTRRTGSLGVDSSPLSETLGPAQCG 240
REPTPPAGPQGFAGSFCAEGSRRGAEVGWGKLEPQGTRRTGSLGVDSSPLSETLGPAQCG
Sbjct: 181 REPTPPAGPQGFAGSFCAEGSRRGAEVGWGKLEPQGTRRTGSLGVDSSPLSETLGPAQCG 240
Query: 241 SGRRRACSVLHHHCDGIRFRDCHCAPSACPGPTQDPQAGLCTGQEGYPGTDHGLFMGPHL 300
SGRRRACSVLHHHCDGIRFRDCHCAPSACPGPTQDPQAGLCTGQEGYPGTDHGLFMGPHL
Sbjct: 241 SGRRRACSVLHHHCDGIRFRDCHCAPSACPGPTQDPQAGLCTGQEGYPGTDHGLFMGPHL 300
Query: 301 LFQVQGERTNLKVEVTELQDVECEEWPRGSSSN 333
LFQVQGERTNLKVEVTELQDVECEEWPRGSSSN
Sbjct: 301 LFQVQGERTNLKVEVTELQDVECEEWPRGSSSN 333
>gi|239749412 PREDICTED: hypothetical protein XP_002347031 [Homo
sapiens]
Length = 333
Score = 721 bits (1862), Expect = 0.0
Identities = 333/333 (100%), Positives = 333/333 (100%)
Query: 1 MEGVLFFFFHLIYSITEPLQPLHAAHTRHSPWVREPEQRHSETGWFRGLCRSTGKRRPGH 60
MEGVLFFFFHLIYSITEPLQPLHAAHTRHSPWVREPEQRHSETGWFRGLCRSTGKRRPGH
Sbjct: 1 MEGVLFFFFHLIYSITEPLQPLHAAHTRHSPWVREPEQRHSETGWFRGLCRSTGKRRPGH 60
Query: 61 TAPRTQQPKPSGPSSHPREPPLPGAVTGGSLHFQEPPPLGAATAGSRHRQKPPSPGSRHR 120
TAPRTQQPKPSGPSSHPREPPLPGAVTGGSLHFQEPPPLGAATAGSRHRQKPPSPGSRHR
Sbjct: 61 TAPRTQQPKPSGPSSHPREPPLPGAVTGGSLHFQEPPPLGAATAGSRHRQKPPSPGSRHR 120
Query: 121 WEPPPPGAATATGSRHRREPPSPGATTAGSCHLRSSGSTGTRRAPSHPAALQVPYTREGP 180
WEPPPPGAATATGSRHRREPPSPGATTAGSCHLRSSGSTGTRRAPSHPAALQVPYTREGP
Sbjct: 121 WEPPPPGAATATGSRHRREPPSPGATTAGSCHLRSSGSTGTRRAPSHPAALQVPYTREGP 180
Query: 181 REPTPPAGPQGFAGSFCAEGSRRGAEVGWGKLEPQGTRRTGSLGVDSSPLSETLGPAQCG 240
REPTPPAGPQGFAGSFCAEGSRRGAEVGWGKLEPQGTRRTGSLGVDSSPLSETLGPAQCG
Sbjct: 181 REPTPPAGPQGFAGSFCAEGSRRGAEVGWGKLEPQGTRRTGSLGVDSSPLSETLGPAQCG 240
Query: 241 SGRRRACSVLHHHCDGIRFRDCHCAPSACPGPTQDPQAGLCTGQEGYPGTDHGLFMGPHL 300
SGRRRACSVLHHHCDGIRFRDCHCAPSACPGPTQDPQAGLCTGQEGYPGTDHGLFMGPHL
Sbjct: 241 SGRRRACSVLHHHCDGIRFRDCHCAPSACPGPTQDPQAGLCTGQEGYPGTDHGLFMGPHL 300
Query: 301 LFQVQGERTNLKVEVTELQDVECEEWPRGSSSN 333
LFQVQGERTNLKVEVTELQDVECEEWPRGSSSN
Sbjct: 301 LFQVQGERTNLKVEVTELQDVECEEWPRGSSSN 333
>gi|239743547 PREDICTED: hypothetical protein XP_002342883 [Homo
sapiens]
Length = 333
Score = 721 bits (1862), Expect = 0.0
Identities = 333/333 (100%), Positives = 333/333 (100%)
Query: 1 MEGVLFFFFHLIYSITEPLQPLHAAHTRHSPWVREPEQRHSETGWFRGLCRSTGKRRPGH 60
MEGVLFFFFHLIYSITEPLQPLHAAHTRHSPWVREPEQRHSETGWFRGLCRSTGKRRPGH
Sbjct: 1 MEGVLFFFFHLIYSITEPLQPLHAAHTRHSPWVREPEQRHSETGWFRGLCRSTGKRRPGH 60
Query: 61 TAPRTQQPKPSGPSSHPREPPLPGAVTGGSLHFQEPPPLGAATAGSRHRQKPPSPGSRHR 120
TAPRTQQPKPSGPSSHPREPPLPGAVTGGSLHFQEPPPLGAATAGSRHRQKPPSPGSRHR
Sbjct: 61 TAPRTQQPKPSGPSSHPREPPLPGAVTGGSLHFQEPPPLGAATAGSRHRQKPPSPGSRHR 120
Query: 121 WEPPPPGAATATGSRHRREPPSPGATTAGSCHLRSSGSTGTRRAPSHPAALQVPYTREGP 180
WEPPPPGAATATGSRHRREPPSPGATTAGSCHLRSSGSTGTRRAPSHPAALQVPYTREGP
Sbjct: 121 WEPPPPGAATATGSRHRREPPSPGATTAGSCHLRSSGSTGTRRAPSHPAALQVPYTREGP 180
Query: 181 REPTPPAGPQGFAGSFCAEGSRRGAEVGWGKLEPQGTRRTGSLGVDSSPLSETLGPAQCG 240
REPTPPAGPQGFAGSFCAEGSRRGAEVGWGKLEPQGTRRTGSLGVDSSPLSETLGPAQCG
Sbjct: 181 REPTPPAGPQGFAGSFCAEGSRRGAEVGWGKLEPQGTRRTGSLGVDSSPLSETLGPAQCG 240
Query: 241 SGRRRACSVLHHHCDGIRFRDCHCAPSACPGPTQDPQAGLCTGQEGYPGTDHGLFMGPHL 300
SGRRRACSVLHHHCDGIRFRDCHCAPSACPGPTQDPQAGLCTGQEGYPGTDHGLFMGPHL
Sbjct: 241 SGRRRACSVLHHHCDGIRFRDCHCAPSACPGPTQDPQAGLCTGQEGYPGTDHGLFMGPHL 300
Query: 301 LFQVQGERTNLKVEVTELQDVECEEWPRGSSSN 333
LFQVQGERTNLKVEVTELQDVECEEWPRGSSSN
Sbjct: 301 LFQVQGERTNLKVEVTELQDVECEEWPRGSSSN 333
>gi|134254450 patched isoform S [Homo sapiens]
Length = 1296
Score = 92.0 bits (227), Expect = 6e-19
Identities = 93/295 (31%), Positives = 113/295 (38%), Gaps = 52/295 (17%)
Query: 58 PGHTAPRTQQPKPSGPSSHPREPPLPGAVTGGS----LHFQEPPPLGAATAGSRHRQKPP 113
P + R P P P S R PG GS + + + RH +
Sbjct: 1035 PANGLNRLPTPSPEPPPSVVRFAMPPGHTHSGSDSSDSEYSSQTTVSGLSEELRHYEAQQ 1094
Query: 114 SPGSR------HRWEPPPPGAATATGSRHRREPPSPGATTAGSCHLRSSGSTGTRRAPSH 167
G E P +T R PPS HL SGS R
Sbjct: 1095 GAGGPAHQVIVEATENPVFAHSTVVHPESRHHPPS---NPRQQPHL-DSGSLPPGRQGQQ 1150
Query: 168 PAALQVPYTREGPREPT--PPAGPQGFAGSFCAEG-SRRGAEVGWGKLEPQGTRRTGSLG 224
P R+ PRE PP P+ A EG S WG P+G R
Sbjct: 1151 PR-------RDPPREGLWPPPYRPRRDAFEISTEGHSGPSNRARWG---PRGARSHNP-- 1198
Query: 225 VDSSPLSETLGPAQCGSGRRRACSVLHHHCDGIRFRDCHCA------PSACPGPTQDPQA 278
+P S +G + G +C I + P PGP ++P+
Sbjct: 1199 --RNPASTAMGSSVPG------------YCQPITTVTASASVTVAVHPPPVPGPGRNPRG 1244
Query: 279 GLCTGQEGYPGTDHGLFMGPHLLFQVQGERTNLKVEVTELQDVECEEWPRGSSSN 333
GLC G YP TDHGLF PH+ F V+ ER + KVEV ELQDVECEE PRGSSSN
Sbjct: 1245 GLCPG---YPETDHGLFEDPHVPFHVRCERRDSKVEVIELQDVECEERPRGSSSN 1296
>gi|134254435 patched isoform S [Homo sapiens]
Length = 1296
Score = 92.0 bits (227), Expect = 6e-19
Identities = 93/295 (31%), Positives = 113/295 (38%), Gaps = 52/295 (17%)
Query: 58 PGHTAPRTQQPKPSGPSSHPREPPLPGAVTGGS----LHFQEPPPLGAATAGSRHRQKPP 113
P + R P P P S R PG GS + + + RH +
Sbjct: 1035 PANGLNRLPTPSPEPPPSVVRFAMPPGHTHSGSDSSDSEYSSQTTVSGLSEELRHYEAQQ 1094
Query: 114 SPGSR------HRWEPPPPGAATATGSRHRREPPSPGATTAGSCHLRSSGSTGTRRAPSH 167
G E P +T R PPS HL SGS R
Sbjct: 1095 GAGGPAHQVIVEATENPVFAHSTVVHPESRHHPPS---NPRQQPHL-DSGSLPPGRQGQQ 1150
Query: 168 PAALQVPYTREGPREPT--PPAGPQGFAGSFCAEG-SRRGAEVGWGKLEPQGTRRTGSLG 224
P R+ PRE PP P+ A EG S WG P+G R
Sbjct: 1151 PR-------RDPPREGLWPPPYRPRRDAFEISTEGHSGPSNRARWG---PRGARSHNP-- 1198
Query: 225 VDSSPLSETLGPAQCGSGRRRACSVLHHHCDGIRFRDCHCA------PSACPGPTQDPQA 278
+P S +G + G +C I + P PGP ++P+
Sbjct: 1199 --RNPASTAMGSSVPG------------YCQPITTVTASASVTVAVHPPPVPGPGRNPRG 1244
Query: 279 GLCTGQEGYPGTDHGLFMGPHLLFQVQGERTNLKVEVTELQDVECEEWPRGSSSN 333
GLC G YP TDHGLF PH+ F V+ ER + KVEV ELQDVECEE PRGSSSN
Sbjct: 1245 GLCPG---YPETDHGLFEDPHVPFHVRCERRDSKVEVIELQDVECEERPRGSSSN 1296
>gi|134254468 patched isoform S [Homo sapiens]
Length = 1296
Score = 92.0 bits (227), Expect = 6e-19
Identities = 93/295 (31%), Positives = 113/295 (38%), Gaps = 52/295 (17%)
Query: 58 PGHTAPRTQQPKPSGPSSHPREPPLPGAVTGGS----LHFQEPPPLGAATAGSRHRQKPP 113
P + R P P P S R PG GS + + + RH +
Sbjct: 1035 PANGLNRLPTPSPEPPPSVVRFAMPPGHTHSGSDSSDSEYSSQTTVSGLSEELRHYEAQQ 1094
Query: 114 SPGSR------HRWEPPPPGAATATGSRHRREPPSPGATTAGSCHLRSSGSTGTRRAPSH 167
G E P +T R PPS HL SGS R
Sbjct: 1095 GAGGPAHQVIVEATENPVFAHSTVVHPESRHHPPS---NPRQQPHL-DSGSLPPGRQGQQ 1150
Query: 168 PAALQVPYTREGPREPT--PPAGPQGFAGSFCAEG-SRRGAEVGWGKLEPQGTRRTGSLG 224
P R+ PRE PP P+ A EG S WG P+G R
Sbjct: 1151 PR-------RDPPREGLWPPPYRPRRDAFEISTEGHSGPSNRARWG---PRGARSHNP-- 1198
Query: 225 VDSSPLSETLGPAQCGSGRRRACSVLHHHCDGIRFRDCHCA------PSACPGPTQDPQA 278
+P S +G + G +C I + P PGP ++P+
Sbjct: 1199 --RNPASTAMGSSVPG------------YCQPITTVTASASVTVAVHPPPVPGPGRNPRG 1244
Query: 279 GLCTGQEGYPGTDHGLFMGPHLLFQVQGERTNLKVEVTELQDVECEEWPRGSSSN 333
GLC G YP TDHGLF PH+ F V+ ER + KVEV ELQDVECEE PRGSSSN
Sbjct: 1245 GLCPG---YPETDHGLFEDPHVPFHVRCERRDSKVEVIELQDVECEERPRGSSSN 1296
>gi|134254452 patched isoform S [Homo sapiens]
Length = 1296
Score = 92.0 bits (227), Expect = 6e-19
Identities = 93/295 (31%), Positives = 113/295 (38%), Gaps = 52/295 (17%)
Query: 58 PGHTAPRTQQPKPSGPSSHPREPPLPGAVTGGS----LHFQEPPPLGAATAGSRHRQKPP 113
P + R P P P S R PG GS + + + RH +
Sbjct: 1035 PANGLNRLPTPSPEPPPSVVRFAMPPGHTHSGSDSSDSEYSSQTTVSGLSEELRHYEAQQ 1094
Query: 114 SPGSR------HRWEPPPPGAATATGSRHRREPPSPGATTAGSCHLRSSGSTGTRRAPSH 167
G E P +T R PPS HL SGS R
Sbjct: 1095 GAGGPAHQVIVEATENPVFAHSTVVHPESRHHPPS---NPRQQPHL-DSGSLPPGRQGQQ 1150
Query: 168 PAALQVPYTREGPREPT--PPAGPQGFAGSFCAEG-SRRGAEVGWGKLEPQGTRRTGSLG 224
P R+ PRE PP P+ A EG S WG P+G R
Sbjct: 1151 PR-------RDPPREGLWPPPYRPRRDAFEISTEGHSGPSNRARWG---PRGARSHNP-- 1198
Query: 225 VDSSPLSETLGPAQCGSGRRRACSVLHHHCDGIRFRDCHCA------PSACPGPTQDPQA 278
+P S +G + G +C I + P PGP ++P+
Sbjct: 1199 --RNPASTAMGSSVPG------------YCQPITTVTASASVTVAVHPPPVPGPGRNPRG 1244
Query: 279 GLCTGQEGYPGTDHGLFMGPHLLFQVQGERTNLKVEVTELQDVECEEWPRGSSSN 333
GLC G YP TDHGLF PH+ F V+ ER + KVEV ELQDVECEE PRGSSSN
Sbjct: 1245 GLCPG---YPETDHGLFEDPHVPFHVRCERRDSKVEVIELQDVECEERPRGSSSN 1296
>gi|134254432 patched isoform L' [Homo sapiens]
Length = 1446
Score = 92.0 bits (227), Expect = 6e-19
Identities = 93/295 (31%), Positives = 113/295 (38%), Gaps = 52/295 (17%)
Query: 58 PGHTAPRTQQPKPSGPSSHPREPPLPGAVTGGS----LHFQEPPPLGAATAGSRHRQKPP 113
P + R P P P S R PG GS + + + RH +
Sbjct: 1185 PANGLNRLPTPSPEPPPSVVRFAMPPGHTHSGSDSSDSEYSSQTTVSGLSEELRHYEAQQ 1244
Query: 114 SPGSR------HRWEPPPPGAATATGSRHRREPPSPGATTAGSCHLRSSGSTGTRRAPSH 167
G E P +T R PPS HL SGS R
Sbjct: 1245 GAGGPAHQVIVEATENPVFAHSTVVHPESRHHPPS---NPRQQPHL-DSGSLPPGRQGQQ 1300
Query: 168 PAALQVPYTREGPREPT--PPAGPQGFAGSFCAEG-SRRGAEVGWGKLEPQGTRRTGSLG 224
P R+ PRE PP P+ A EG S WG P+G R
Sbjct: 1301 PR-------RDPPREGLWPPPYRPRRDAFEISTEGHSGPSNRARWG---PRGARSHNP-- 1348
Query: 225 VDSSPLSETLGPAQCGSGRRRACSVLHHHCDGIRFRDCHCA------PSACPGPTQDPQA 278
+P S +G + G +C I + P PGP ++P+
Sbjct: 1349 --RNPASTAMGSSVPG------------YCQPITTVTASASVTVAVHPPPVPGPGRNPRG 1394
Query: 279 GLCTGQEGYPGTDHGLFMGPHLLFQVQGERTNLKVEVTELQDVECEEWPRGSSSN 333
GLC G YP TDHGLF PH+ F V+ ER + KVEV ELQDVECEE PRGSSSN
Sbjct: 1395 GLCPG---YPETDHGLFEDPHVPFHVRCERRDSKVEVIELQDVECEERPRGSSSN 1446
>gi|134254466 patched isoform M [Homo sapiens]
Length = 1381
Score = 92.0 bits (227), Expect = 6e-19
Identities = 93/295 (31%), Positives = 113/295 (38%), Gaps = 52/295 (17%)
Query: 58 PGHTAPRTQQPKPSGPSSHPREPPLPGAVTGGS----LHFQEPPPLGAATAGSRHRQKPP 113
P + R P P P S R PG GS + + + RH +
Sbjct: 1120 PANGLNRLPTPSPEPPPSVVRFAMPPGHTHSGSDSSDSEYSSQTTVSGLSEELRHYEAQQ 1179
Query: 114 SPGSR------HRWEPPPPGAATATGSRHRREPPSPGATTAGSCHLRSSGSTGTRRAPSH 167
G E P +T R PPS HL SGS R
Sbjct: 1180 GAGGPAHQVIVEATENPVFAHSTVVHPESRHHPPS---NPRQQPHL-DSGSLPPGRQGQQ 1235
Query: 168 PAALQVPYTREGPREPT--PPAGPQGFAGSFCAEG-SRRGAEVGWGKLEPQGTRRTGSLG 224
P R+ PRE PP P+ A EG S WG P+G R
Sbjct: 1236 PR-------RDPPREGLWPPPYRPRRDAFEISTEGHSGPSNRARWG---PRGARSHNP-- 1283
Query: 225 VDSSPLSETLGPAQCGSGRRRACSVLHHHCDGIRFRDCHCA------PSACPGPTQDPQA 278
+P S +G + G +C I + P PGP ++P+
Sbjct: 1284 --RNPASTAMGSSVPG------------YCQPITTVTASASVTVAVHPPPVPGPGRNPRG 1329
Query: 279 GLCTGQEGYPGTDHGLFMGPHLLFQVQGERTNLKVEVTELQDVECEEWPRGSSSN 333
GLC G YP TDHGLF PH+ F V+ ER + KVEV ELQDVECEE PRGSSSN
Sbjct: 1330 GLCPG---YPETDHGLFEDPHVPFHVRCERRDSKVEVIELQDVECEERPRGSSSN 1381
>gi|134254446 patched isoform L [Homo sapiens]
Length = 1447
Score = 92.0 bits (227), Expect = 6e-19
Identities = 93/295 (31%), Positives = 113/295 (38%), Gaps = 52/295 (17%)
Query: 58 PGHTAPRTQQPKPSGPSSHPREPPLPGAVTGGS----LHFQEPPPLGAATAGSRHRQKPP 113
P + R P P P S R PG GS + + + RH +
Sbjct: 1186 PANGLNRLPTPSPEPPPSVVRFAMPPGHTHSGSDSSDSEYSSQTTVSGLSEELRHYEAQQ 1245
Query: 114 SPGSR------HRWEPPPPGAATATGSRHRREPPSPGATTAGSCHLRSSGSTGTRRAPSH 167
G E P +T R PPS HL SGS R
Sbjct: 1246 GAGGPAHQVIVEATENPVFAHSTVVHPESRHHPPS---NPRQQPHL-DSGSLPPGRQGQQ 1301
Query: 168 PAALQVPYTREGPREPT--PPAGPQGFAGSFCAEG-SRRGAEVGWGKLEPQGTRRTGSLG 224
P R+ PRE PP P+ A EG S WG P+G R
Sbjct: 1302 PR-------RDPPREGLWPPPYRPRRDAFEISTEGHSGPSNRARWG---PRGARSHNP-- 1349
Query: 225 VDSSPLSETLGPAQCGSGRRRACSVLHHHCDGIRFRDCHCA------PSACPGPTQDPQA 278
+P S +G + G +C I + P PGP ++P+
Sbjct: 1350 --RNPASTAMGSSVPG------------YCQPITTVTASASVTVAVHPPPVPGPGRNPRG 1395
Query: 279 GLCTGQEGYPGTDHGLFMGPHLLFQVQGERTNLKVEVTELQDVECEEWPRGSSSN 333
GLC G YP TDHGLF PH+ F V+ ER + KVEV ELQDVECEE PRGSSSN
Sbjct: 1396 GLCPG---YPETDHGLFEDPHVPFHVRCERRDSKVEVIELQDVECEERPRGSSSN 1447
>gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens]
Length = 1466
Score = 55.5 bits (132), Expect = 7e-08
Identities = 48/141 (34%), Positives = 54/141 (38%), Gaps = 14/141 (9%)
Query: 58 PGHTAPRTQQPKPS--GPSSHPREPPLPGAVTGGSLHFQEPPPLGAATAGSRHRQKPPSP 115
PG P + KP GP P PG + PP A G R PP P
Sbjct: 644 PGTGGPPGENGKPGEPGPKGDAGAPGAPGGKGDAGAPGERGPPGLAGAPGLRGGAGPPGP 703
Query: 116 --GSRHRWEPPPPGAATATGSRHRREPPSPGATTAGSCHLRSSGSTGTRRAPSHPAALQV 173
G P PPGAA G + PG L S G G + P P A V
Sbjct: 704 EGGKGAAGPPGPPGAAGTPGLQGM-----PGERGG----LGSPGPKGDKGEPGGPGADGV 754
Query: 174 PYTREGPREPTPPAGPQGFAG 194
P ++GPR PT P GP G AG
Sbjct: 755 P-GKDGPRGPTGPIGPPGPAG 774
Score = 43.9 bits (102), Expect = 2e-04
Identities = 44/152 (28%), Positives = 53/152 (34%), Gaps = 17/152 (11%)
Query: 46 FRGLCRSTGKRRPGHTAPRTQQ--PKPSGPSSHPREPPLPGAVTGGSLHFQEPPPLGAAT 103
FRG G PG P ++ P P+GP EP G G + P G +
Sbjct: 490 FRGPAGPNGI--PGEKGPAGERGAPGPAGPRGAAGEPGRDGVPGGPGMRGMPGSPGGPGS 547
Query: 104 AGSRHRQKPPSPGSR-HRWEPPPPGAATATGSRHRREPPSPGATTAGSCHLRSSGSTGTR 162
G KP PGS+ P PPG + G P P + G G R
Sbjct: 548 DG-----KPGPPGSQGESGRPGPPGPSGPRGQPGVMGFPGPKGNDG------APGKNGER 596
Query: 163 RAPSHPAALQVPYTREGPREPTPPAGPQGFAG 194
P P Q P + G P P GP G G
Sbjct: 597 GGPGGPGP-QGPPGKNGETGPQGPPGPTGPGG 627
Score = 43.1 bits (100), Expect = 3e-04
Identities = 67/244 (27%), Positives = 83/244 (34%), Gaps = 36/244 (14%)
Query: 52 STGKRRPGHTAPRTQQPKPSGPSSHPREPPLPGAVTGGSLHFQEPPPLGAATAGSRHRQK 111
S GK P + + +P P GPS PR P G + F P A + R
Sbjct: 547 SDGKPGPPGSQGESGRPGPPGPSG-PRGQP-------GVMGFPGPKGNDGAPGKNGERGG 598
Query: 112 PPSPGSRHRWEPPPPGAATATGSRHRREPPSPGATTAGSCHLRSSGSTGTRRAPSHPAAL 171
P PG + PPG TG + P PG G TG P P L
Sbjct: 599 PGGPGPQ-----GPPGKNGETGPQGPPGPTGPGG---------DKGDTG----PPGPQGL 640
Query: 172 Q-VPYTREGPREPTPPA--GPQGFAGSFCAEGSRRGAEVGWGKLEPQGTRRTGSLGVDSS 228
Q +P T P E P GP+G AG+ A G + A G+ P G L +
Sbjct: 641 QGLPGTGGPPGENGKPGEPGPKGDAGAPGAPGGKGDAGAP-GERGPPGLAGAPGLRGGAG 699
Query: 229 PLSETLGPAQCG-SGRRRACSVLHHHCDGIRFRDCHCAPSACPGPTQDPQAGLCTGQEGY 287
P G G G A G++ PGP D G +G
Sbjct: 700 PPGPEGGKGAAGPPGPPGAAGT-----PGLQGMPGERGGLGSPGPKGDKGEPGGPGADGV 754
Query: 288 PGTD 291
PG D
Sbjct: 755 PGKD 758
Score = 42.0 bits (97), Expect = 8e-04
Identities = 67/257 (26%), Positives = 78/257 (30%), Gaps = 48/257 (18%)
Query: 58 PGHTAPR--TQQPKPSGPSSHPRE------PPLPGAV----TGGSLHFQEPPPLGAATAG 105
PG PR T P GP+ P + P LPG + G PP
Sbjct: 755 PGKDGPRGPTGPIGPPGPAGQPGDKGEGGAPGLPGIAGPRGSPGERGETGPPGPAGFPGA 814
Query: 106 SRHRQKPPSPGSR----HRWEPPPPGAATATGSRHRREPPSPGATTAGSCHLRSSGSTGT 161
+P G R + E PPG A G PP P G G
Sbjct: 815 PGQNGEPGGKGERGAPGEKGEGGPPGVAGPPGGSGPAGPPGP------------QGVKGE 862
Query: 162 RRAPSHPAALQVPYTREGPREPTP-----PAGPQGFAGSFCAEG--SRRGAEVGWGKLEP 214
R +P P A P R P P P GP G G G GA G P
Sbjct: 863 RGSPGGPGAAGFPGARGLPGPPGSNGNPGPPGPSGSPGKDGPPGPAGNTGAPGSPGVSGP 922
Query: 215 QGTRRTGSLGVDSSPLSETLGPAQCGSGRRRACSVLHHHCDGIRFRDCHCAPSACPGPTQ 274
+G G G SP ++ GP A GI P PGP
Sbjct: 923 KGD--AGQPGEKGSPGAQ--GPPGAPGPLGIA---------GITGARGLAGPPGMPGPRG 969
Query: 275 DPQAGLCTGQEGYPGTD 291
P G+ G PG +
Sbjct: 970 SPGPQGVKGESGKPGAN 986
Score = 39.7 bits (91), Expect = 0.004
Identities = 45/162 (27%), Positives = 58/162 (35%), Gaps = 22/162 (13%)
Query: 72 GPSSHPREPPLPGAVTGGSLHFQEPPPLG-AATAGSRHRQKPPSPGSRHRWEPPPPGAAT 130
G + P P PG H P P+G A +G R P P GA
Sbjct: 1035 GENGSPGAPGAPG-------HPGPPGPVGPAGKSGDRGESGPAGPA----------GAPG 1077
Query: 131 ATGSRHRREPPSPGATTAGSCHLRSSGSTGTRRAPSHPAA--LQVPYTREGPREPTPPAG 188
GSR P P + ++G G R P +P A P ++G PAG
Sbjct: 1078 PAGSRGAPGPQGPRGDKGETGERGAAGIKGHRGFPGNPGAPGSPGPAGQQGAIGSPGPAG 1137
Query: 189 PQGFAGSFCAEGSRRGAEVGWGKLEPQGTR-RTGSLGVDSSP 229
P+G G G + G G + P G R G G + SP
Sbjct: 1138 PRGPVGPSGPPG-KDGTSGHPGPIGPPGPRGNRGERGSEGSP 1178
Score = 37.0 bits (84), Expect = 0.025
Identities = 65/232 (28%), Positives = 79/232 (34%), Gaps = 23/232 (9%)
Query: 72 GPSSHPREPPLPGAV-TGGSLHFQEPPPL--GAATAGSRHRQKPPSPGSRHRWEPPPPGA 128
GP+ P P L GA G P L GA G + P P R E PG
Sbjct: 399 GPAGIPGAPGLMGARGPPGPAGANGAPGLRGGAGEPGKNGAKGEPGPRGE-RGEAGIPGV 457
Query: 129 ATATGSRHRR-EPPSPGATTAGSCHLRSSGSTGTR-----RAPSHPAALQVPYTREGPRE 182
A G + P PGA G+ G R R P+ P + G R
Sbjct: 458 PGAKGEDGKDGSPGEPGANGL-------PGAAGERGAPGFRGPAGPNGIPGEKGPAGERG 510
Query: 183 PTPPAGPQGFAGSFCAEGSRRGAEVGWGKLEPQGTRRTGSLGVDSSPLSETLGPAQCG-S 241
PAGP+G AG +G G + P G G G S E+ P G S
Sbjct: 511 APGPAGPRGAAGEPGRDGVPGGPGMRGMPGSPGGPGSDGKPGPPGSQ-GESGRPGPPGPS 569
Query: 242 GRRRACSVL----HHHCDGIRFRDCHCAPSACPGPTQDPQAGLCTGQEGYPG 289
G R V+ DG ++ PGP P TG +G PG
Sbjct: 570 GPRGQPGVMGFPGPKGNDGAPGKNGERGGPGGPGPQGPPGKNGETGPQGPPG 621
Score = 35.4 bits (80), Expect = 0.072
Identities = 46/168 (27%), Positives = 53/168 (31%), Gaps = 29/168 (17%)
Query: 48 GLCRSTGKRRPGHTAPRTQQPKPSGPSSHPREPPLPGAV-----------TGGSLHFQEP 96
GL + G R QP P GP P PGA G EP
Sbjct: 312 GLPGAAGARGNDGARGSDGQPGPPGPPGTAGFPGSPGAKGEVGPAGSPGSNGAPGQRGEP 371
Query: 97 PPLGAATAGSRHRQKPP----SPGSRHRWEPPPPGAATATGSRHRREPPSPGATTAGSCH 152
P G A G++ PP SPG + E P G A G R PP P
Sbjct: 372 GPQGHA--GAQGPPGPPGINGSPGGKG--EMGPAGIPGAPGLMGARGPPGPAGANGAPGL 427
Query: 153 LRSSGSTGTRRAPSHPAALQVPYTREGPREPTPPAGPQGFAGSFCAEG 200
+G G A P GPR AG G G+ +G
Sbjct: 428 RGGAGEPGKNGAKGEP----------GPRGERGEAGIPGVPGAKGEDG 465
Score = 35.0 bits (79), Expect = 0.093
Identities = 42/123 (34%), Positives = 49/123 (39%), Gaps = 21/123 (17%)
Query: 25 AHTRHSPWVREPEQRHSETGWFRGLCRSTGKR-------RPGHTAPRTQQ-----PKPSG 72
A +R +P + P ETG RG G R PG P QQ P P+G
Sbjct: 1079 AGSRGAPGPQGPRGDKGETGE-RGAAGIKGHRGFPGNPGAPGSPGPAGQQGAIGSPGPAG 1137
Query: 73 PSSHPREPPLPGAVTGGSLHFQEPPPLGA-ATAGSR-HRQKPPSPGSRHRWEPPPPGAAT 130
P P P P G S H P P+G G+R R SPG H +P PPG
Sbjct: 1138 PRG-PVGPSGPPGKDGTSGH---PGPIGPPGPRGNRGERGSEGSPG--HPGQPGPPGPPG 1191
Query: 131 ATG 133
A G
Sbjct: 1192 APG 1194
Score = 34.3 bits (77), Expect = 0.16
Identities = 50/179 (27%), Positives = 60/179 (33%), Gaps = 21/179 (11%)
Query: 61 TAPRTQQPK---PSGPSSHPREPPLPG-----AVTG--GSLHFQEPPPLGAATAGSRHRQ 110
TAP T+ P P GP P P +PG + G GS PP + +
Sbjct: 93 TAP-TRPPNGQGPQGPKGDPGPPGIPGRNGDPGIPGQPGSPGSPGPPGICESCPTGPQNY 151
Query: 111 KPPSPGSRHRWEPPPPGAATATGSRHRREPPSPGATTAGSCHLRSSGSTGTRRAPSHPAA 170
P + G A G PP P T S H S GS G + P P
Sbjct: 152 SPQYDSYDVKSGVAVGGLAGYPGPAGPPGPPGPPGT---SGHPGSPGSPGYQGPPGEPGQ 208
Query: 171 LQVPYTREGPREPTPPAGPQGFAGSFCAEGSRRGAEVGWGKLEPQGTRRTGSLGVDSSP 229
P GP P+GP G G E R G G P G + G G+ P
Sbjct: 209 AG-PSGPPGPPGAIGPSGPAGKDG----ESGRPGRPGERGLPGPPGIK--GPAGIPGFP 260
Score = 33.9 bits (76), Expect = 0.21
Identities = 67/267 (25%), Positives = 78/267 (29%), Gaps = 83/267 (31%)
Query: 58 PGHTAPRTQQPKPSGPSSHPREPPLPGAVTGGSLHFQEPPPLGAATAGSRHRQKPPSPGS 117
PG P P P G S HP P PG +Q PP G + P P
Sbjct: 173 PGPAGP-PGPPGPPGTSGHPGSPGSPG--------YQGPP-------GEPGQAGPSGP-- 214
Query: 118 RHRWEPPPPGAATATGSRHRREPPSPGATTAGSCHLRSSGSTGTRRAPSHPAALQVPYTR 177
P PPGA +G +G G P P +P
Sbjct: 215 -----PGPPGAIGPSG---------------------PAGKDGESGRPGRPGERGLP--- 245
Query: 178 EGPREPTPPAGPQGFAG-----SFCAEGSRRGAEVGWGKLE-----PQGTRRTGSLGVDS 227
GP PAG GF G F +G E G L+ P G +G
Sbjct: 246 -GPPGIKGPAGIPGFPGMKGHRGFDGRNGEKG-ETGAPGLKGENGLPGENGAPGPMGPRG 303
Query: 228 SPLSETLGPAQCGSGRRRACSVLHHHCDGIRFRDCHCAPSACP---------------GP 272
+P E P G+ R DG R D P P GP
Sbjct: 304 AP-GERGRPGLPGAAGARG-------NDGARGSDGQPGPPGPPGTAGFPGSPGAKGEVGP 355
Query: 273 TQDPQAGLCTGQEGYPGTD-HGLFMGP 298
P + GQ G PG H GP
Sbjct: 356 AGSPGSNGAPGQRGEPGPQGHAGAQGP 382
>gi|37537692 proline-rich protein BstNI subfamily 4 precursor [Homo
sapiens]
Length = 247
Score = 55.5 bits (132), Expect = 7e-08
Identities = 44/157 (28%), Positives = 60/157 (38%), Gaps = 28/157 (17%)
Query: 54 GKRRPGHTAPRTQQPKPSGPSSHPRE--------PPLPGAVTG----GSLHFQEPPPLGA 101
G+R G P+ P P P P + PP PG G G Q PPP
Sbjct: 38 GRRPQGGNQPQRPPPPPGKPQGPPPQGGNQSQGPPPPPGKPEGRPPQGGNQSQGPPP--- 94
Query: 102 ATAGSRHRQKPPSPGSRHRWEPPPPGAATAT----GSRHRREPPSPGATTAGSCHLRSSG 157
+ + PP G++ + PPPPG G++ R PP PG G
Sbjct: 95 --HPGKPERPPPQGGNQSQGTPPPPGKPERPPPQGGNQSHRPPPPPGKPERPP----PQG 148
Query: 158 STGTRRAPSHPAALQVPYTREGPRE---PTPPAGPQG 191
++ P HP + P +EG + +PP PQG
Sbjct: 149 GNQSQGPPPHPGKPEGPPPQEGNKSRSARSPPGKPQG 185
Score = 54.3 bits (129), Expect = 1e-07
Identities = 42/130 (32%), Positives = 56/130 (43%), Gaps = 24/130 (18%)
Query: 64 RTQQPKPSGPSSHPREPPLPGAVTGGSLHFQEPPPLGAATAGSRHRQKPPSPGSRHRWEP 123
+ ++P P G + PP PG + PPP G G++ + PP PG R P
Sbjct: 98 KPERPPPQGGNQSQGTPPPPGKP-------ERPPPQG----GNQSHRPPPPPGKPER--P 144
Query: 124 PPPGAATATGSRHRREPPSPGATTAGSCHLRSSGSTGTRRAPSHPAALQVPYTREG--PR 181
PP G G++ + PP PG G + S R P P Q P +EG P+
Sbjct: 145 PPQG-----GNQSQGPPPHPG-KPEGPPPQEGNKSRSARSPPGKP---QGPPQQEGNKPQ 195
Query: 182 EPTPPAGPQG 191
P PP PQG
Sbjct: 196 GPPPPGKPQG 205
Score = 43.1 bits (100), Expect = 3e-04
Identities = 50/189 (26%), Positives = 68/189 (35%), Gaps = 35/189 (18%)
Query: 69 KPSGPSSHPREPPLPGAVTGGSLHFQEPPPLGAATAGSRHRQKPPSP-----------GS 117
+P G + R PP PG G PPP G Q PP P G+
Sbjct: 40 RPQGGNQPQRPPPPPGKPQG-------PPP-----QGGNQSQGPPPPPGKPEGRPPQGGN 87
Query: 118 RHRWEPPPPGAATAT----GSRHRREPPSPGATTAGSCHLRSSGSTGTRRAPSHPAALQV 173
+ + PP PG G++ + PP PG G + R P P +
Sbjct: 88 QSQGPPPHPGKPERPPPQGGNQSQGTPPPPGKPERPP----PQGGNQSHRPPPPPGKPER 143
Query: 174 PYTREGPREPTPPAGPQGFAGSFCAEGSR-RGAEVGWGKLEPQG-TRRTGSLGVDSSPLS 231
P + G + PP P G EG++ R A GK PQG ++ G+ P
Sbjct: 144 PPPQGGNQSQGPPPHPGKPEGPPPQEGNKSRSARSPPGK--PQGPPQQEGNKPQGPPPPG 201
Query: 232 ETLGPAQCG 240
+ GP G
Sbjct: 202 KPQGPPPAG 210
Score = 37.4 bits (85), Expect = 0.019
Identities = 24/87 (27%), Positives = 32/87 (36%), Gaps = 12/87 (13%)
Query: 55 KRRPGHTAPRTQQPKPSGPSSHPREPPLPGAVTGGSLHFQEPPPLGAATAGSRHRQKPPS 114
K R + P Q P + P+ PP PG G PPP AG +Q
Sbjct: 172 KSRSARSPPGKPQGPPQQEGNKPQGPPPPGKPQG-------PPP-----AGGNPQQPQAP 219
Query: 115 PGSRHRWEPPPPGAATATGSRHRREPP 141
P + + PPPP ++PP
Sbjct: 220 PAGKPQGPPPPPQGGRPPRPAQGQQPP 246
Score = 35.8 bits (81), Expect = 0.055
Identities = 28/104 (26%), Positives = 40/104 (38%), Gaps = 13/104 (12%)
Query: 90 SLHFQEPPPLGAATAGSRHRQKPPSPGSRHRWEPPPPGAATATGSRHRREPPSPGATTAG 149
SL P G G Q+PP P + + PPP G G++ + PP PG
Sbjct: 28 SLFLISGKPEGRRPQGGNQPQRPPPPPGKPQ-GPPPQG-----GNQSQGPPPPPGKPEGR 81
Query: 150 SCHLRSSGSTGTRRAPSHPAALQVPYTREGPRE---PTPPAGPQ 190
G ++ P HP + P + G + P PP P+
Sbjct: 82 P----PQGGNQSQGPPPHPGKPERPPPQGGNQSQGTPPPPGKPE 121
Score = 32.3 bits (72), Expect = 0.61
Identities = 37/127 (29%), Positives = 42/127 (33%), Gaps = 23/127 (18%)
Query: 57 RPGHTAPRTQQPKPSG------PSSHPREPPLPGAVTGG-SLHFQEPP--PLGAATAGSR 107
RP + ++P P G P HP +P P G S + PP P G
Sbjct: 133 RPPPPPGKPERPPPQGGNQSQGPPPHPGKPEGPPPQEGNKSRSARSPPGKPQGPPQQEGN 192
Query: 108 HRQKPPSPGSRHRWEPPPPGAATATGSRHRREPPSPGATTAGSCHLRSSGSTGTRRAPSH 167
Q PP PG PPP G P P A AG G R P
Sbjct: 193 KPQGPPPPGKPQ--GPPPAGG----------NPQQPQAPPAGKPQGPPPPPQGGR--PPR 238
Query: 168 PAALQVP 174
PA Q P
Sbjct: 239 PAQGQQP 245
>gi|41349482 proline-rich protein BstNI subfamily 1 isoform 1
preproprotein [Homo sapiens]
Length = 331
Score = 52.8 bits (125), Expect = 4e-07
Identities = 42/135 (31%), Positives = 57/135 (42%), Gaps = 22/135 (16%)
Query: 64 RTQQPKPSGPSSHPREPPLPGAVTGGSLHFQEPPPLGAATAGSRH-----RQKPPSPGSR 118
+ Q P P G P+ PP PG G PPP G + S+ + PP G++
Sbjct: 178 KPQGPPPQG-GKKPQGPPPPGKPQG-------PPPQGDKSRSSQSPPGKPQGPPPQGGNQ 229
Query: 119 HRWEPPPPG---AATATGSRHRREPPSPGATTAGSCHLRSSGSTGTRRAPSHPAALQVPY 175
+ PPPPG G + PP PG + G + ++ A S P Q P
Sbjct: 230 PQGPPPPPGKPQGPPPQGGNKPQGPPPPGKPQGPP----AQGGSKSQSARSPPGKPQGPP 285
Query: 176 TREG--PREPTPPAG 188
+EG P+ P PPAG
Sbjct: 286 QQEGNNPQGPPPPAG 300
Score = 47.4 bits (111), Expect = 2e-05
Identities = 42/139 (30%), Positives = 56/139 (40%), Gaps = 24/139 (17%)
Query: 64 RTQQPKPSGPSSHPREPPLPGAVTGGSLHFQEPPPLGAATAGSRH-----RQKPPSPGSR 118
+ Q P P G + P+ PP PG G PPP G + R + PP G++
Sbjct: 117 KPQGPPPQG-GNRPQGPPPPGKPQG-------PPPQGDKSRSPRSPPGKPQGPPPQGGNQ 168
Query: 119 HRWEPPPPG---AATATGSRHRREPPSPGATTAGSCHLRSSGSTGTRRAPSHPAALQVPY 175
+ PPPPG G + + PP PG +R + S P Q P
Sbjct: 169 PQGPPPPPGKPQGPPPQGGKKPQGPPPPGKPQG-----PPPQGDKSRSSQSPPGKPQGPP 223
Query: 176 TREG--PREPTPPAG-PQG 191
+ G P+ P PP G PQG
Sbjct: 224 PQGGNQPQGPPPPPGKPQG 242
Score = 47.0 bits (110), Expect = 2e-05
Identities = 44/149 (29%), Positives = 56/149 (37%), Gaps = 22/149 (14%)
Query: 54 GKRRPGHTAP--RTQQPKPSGPSSHPREPPLPGAVTGGSLHFQEPPPLGAATAGSRH--- 108
G + G P + Q P P G + P+ PP PG G PPP G + R
Sbjct: 44 GNKPQGPPPPPGKPQGPPPQG-GNKPQGPPPPGKPQG-------PPPQGDKSRSPRSPPG 95
Query: 109 --RQKPPSPGSRHRWEPPPPG---AATATGSRHRREPPSPGATTAGSCHLRSSGSTGTRR 163
+ PP G++ + PPPPG G + PP PG + S R
Sbjct: 96 KPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGNRPQGPPPPGKPQGPP--PQGDKSRSPRS 153
Query: 164 APSHPAALQVPYTREGPREPTPPAG-PQG 191
P P P P+ P PP G PQG
Sbjct: 154 PPGKPQG-PPPQGGNQPQGPPPPPGKPQG 181
Score = 45.8 bits (107), Expect = 5e-05
Identities = 45/147 (30%), Positives = 51/147 (34%), Gaps = 19/147 (12%)
Query: 54 GKRRPGHTAP-RTQQPKPSGPSSH-PREPP--LPGAVTGGSLHFQEPPPLGAATAGSRHR 109
G R G P + Q P P G S PR PP G G Q PPP G
Sbjct: 126 GNRPQGPPPPGKPQGPPPQGDKSRSPRSPPGKPQGPPPQGGNQPQGPPPPPGKPQG---- 181
Query: 110 QKPPSPGSRHRWEPPPPGAATAT---GSRHRREPPSPGATTAGSCHLRSSGSTGTRRAPS 166
PP G + PPPPG G + R PG G + P
Sbjct: 182 --PPPQGGKKPQGPPPPGKPQGPPPQGDKSRSSQSPPGKPQGPP----PQGGNQPQGPPP 235
Query: 167 HPAALQVPYTREG--PREPTPPAGPQG 191
P Q P + G P+ P PP PQG
Sbjct: 236 PPGKPQGPPPQGGNKPQGPPPPGKPQG 262
Score = 37.0 bits (84), Expect = 0.025
Identities = 36/138 (26%), Positives = 47/138 (34%), Gaps = 21/138 (15%)
Query: 55 KRRPGHTAP-RTQQPKPSGPSSHPREPPLPGAVTG----GSLHFQEPPPLGAATAGSRHR 109
K R + P + Q P P G + PP PG G G Q PPP G
Sbjct: 208 KSRSSQSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGNKPQGPPPPGKP------- 260
Query: 110 QKPPSPG-SRHRWEPPPPGAATATGSRHRREPPSPGATTAGSCHLRSSGSTGTRRAPSHP 168
Q PP+ G S+ + PPG + P P G+ + G + P P
Sbjct: 261 QGPPAQGGSKSQSARSPPGKPQGPPQQEGNNPQGPPPPAGGNPQQPQAPPAGQPQGPPRP 320
Query: 169 AALQVPYTREGPREPTPP 186
+G R PP
Sbjct: 321 P--------QGGRPSRPP 330
Score = 34.3 bits (77), Expect = 0.16
Identities = 31/108 (28%), Positives = 36/108 (33%), Gaps = 17/108 (15%)
Query: 98 PLGAATAGSRHRQKPPSP----------GSRHRWEPPPPGAATATGSR--HRREPPSPGA 145
P G + G Q PP P G PPPPG + R P SP
Sbjct: 36 PQGPSPQGGNKPQGPPPPPGKPQGPPPQGGNKPQGPPPPGKPQGPPPQGDKSRSPRSPPG 95
Query: 146 TTAGSCHLRSSGSTGTRRAPSHPAALQVPYTREG--PREPTPPAGPQG 191
G G + P P Q P + G P+ P PP PQG
Sbjct: 96 KPQGP---PPQGGNQPQGPPPPPGKPQGPPPQGGNRPQGPPPPGKPQG 140
>gi|117306167 proline-rich protein BstNI subfamily 3 precursor [Homo
sapiens]
Length = 309
Score = 50.4 bits (119), Expect = 2e-06
Identities = 41/141 (29%), Positives = 51/141 (36%), Gaps = 36/141 (25%)
Query: 57 RPGHTAPRTQQPKPSGPSSHPREPPLPGAVTG----GSLHFQEPPPLGAATAGSRHRQKP 112
RPG + + P P G + PP PG G G Q PPP G P
Sbjct: 158 RPG----KPEGPPPQGGNQSQGPPPHPGKPEGPPPQGGNQSQGPPPRPGKPEGP-----P 208
Query: 113 PSPGSRHRWEPPPPGAATATGSRHRREPPSPGATTAGSCHLRSSGSTGTRRAPSHPAALQ 172
P G++ + PP PG S+ +P P P HP Q
Sbjct: 209 PQGGNQSQGPPPRPGKPEGPPSQGGNKPQGP---------------------PPHPGKPQ 247
Query: 173 VPYTREG--PREPTPPAGPQG 191
P +EG P+ P PP PQG
Sbjct: 248 GPPPQEGNKPQRPPPPGRPQG 268
Score = 47.0 bits (110), Expect = 2e-05
Identities = 39/152 (25%), Positives = 54/152 (35%), Gaps = 25/152 (16%)
Query: 54 GKRRPGHTAPRTQQPKPSGPSSHPRE--------PPLPGAVTG----GSLHFQEPPPLGA 101
G+R G P+ P P P P + PP PG G G Q PPP
Sbjct: 38 GRRPQGGNQPQRTPPPPGKPEGRPPQGGNQSQGPPPRPGKPEGPPPQGGNQSQGPPPRPG 97
Query: 102 ATAGSRHRQKPPSPGSRHRWEPPPPGAATAT----GSRHRREPPSPGATTAGSCHLRSSG 157
G +PP G++ + PP PG G++ + PP PG G
Sbjct: 98 KPEG-----QPPQGGNQSQGPPPRPGKPEGPPPQGGNQSQGPPPRPGKPEGPP----PQG 148
Query: 158 STGTRRAPSHPAALQVPYTREGPREPTPPAGP 189
++ P P + P + G + PP P
Sbjct: 149 GNQSQGPPPRPGKPEGPPPQGGNQSQGPPPHP 180
Score = 42.7 bits (99), Expect = 4e-04
Identities = 35/140 (25%), Positives = 51/140 (36%), Gaps = 17/140 (12%)
Query: 58 PGHTAPRTQQPKPSGPSSHPREPPLPGAVTG----GSLHFQEPPPLGAATAGSRHRQKPP 113
P + + + +P G + R PP PG G G Q PPP G PP
Sbjct: 29 PSVISGKPEGRRPQGGNQPQRTPPPPGKPEGRPPQGGNQSQGPPPRPGKPEG-----PPP 83
Query: 114 SPGSRHRWEPPPPGAATAT----GSRHRREPPSPGATTAGSCHLRSSGSTGTRRAPSHPA 169
G++ + PP PG G++ + PP PG G ++ P P
Sbjct: 84 QGGNQSQGPPPRPGKPEGQPPQGGNQSQGPPPRPGKPEGPP----PQGGNQSQGPPPRPG 139
Query: 170 ALQVPYTREGPREPTPPAGP 189
+ P + G + PP P
Sbjct: 140 KPEGPPPQGGNQSQGPPPRP 159
Score = 41.2 bits (95), Expect = 0.001
Identities = 29/88 (32%), Positives = 33/88 (37%), Gaps = 9/88 (10%)
Query: 57 RPGHTA--PRTQQPKPSGPSSHPREPPLPGAVTGGSLHFQEPP--PLGAATAGSRHRQKP 112
RPG P KP GP HP +P P G PP P G G +Q
Sbjct: 221 RPGKPEGPPSQGGNKPQGPPPHPGKPQGPPPQEGNKPQRPPPPGRPQGPPPPGGNPQQPL 280
Query: 113 PSPGSRHRWEPPPPGAATATGSRHRREP 140
P P + + PPPP G R R P
Sbjct: 281 PPPAGKPQGPPPPP-----QGGRPHRPP 303
Score = 35.8 bits (81), Expect = 0.055
Identities = 33/131 (25%), Positives = 50/131 (38%), Gaps = 22/131 (16%)
Query: 65 TQQPKPSGPSSHP--REPPLPGAVTGGSLHFQEPPPLGAATAGSRHRQKPPSPGSRHRWE 122
+Q+ PS S P R P GG+ + PPP G + +PP G++ +
Sbjct: 24 SQEESPSVISGKPEGRRPQ------GGNQPQRTPPPPG------KPEGRPPQGGNQSQGP 71
Query: 123 PPPPGAATAT----GSRHRREPPSPGATTAGSCHLRSSGSTGTRRAPSHPAALQVPYTRE 178
PP PG G++ + PP PG G ++ P P + P +
Sbjct: 72 PPRPGKPEGPPPQGGNQSQGPPPRPGKPEGQP----PQGGNQSQGPPPRPGKPEGPPPQG 127
Query: 179 GPREPTPPAGP 189
G + PP P
Sbjct: 128 GNQSQGPPPRP 138
Score = 30.8 bits (68), Expect = 1.8
Identities = 25/77 (32%), Positives = 31/77 (40%), Gaps = 12/77 (15%)
Query: 72 GPSSHPREPPLPGAVTGGSLHFQEPP----PLGAATAGSRHRQKPPSPGSRHRWEPPPPG 127
GP P +P P + GG+ PP P G Q+PP PG PPPPG
Sbjct: 217 GPPPRPGKPEGPPS-QGGNKPQGPPPHPGKPQGPPPQEGNKPQRPPPPGRPQ--GPPPPG 273
Query: 128 AATATGSRHRREPPSPG 144
G+ + PP G
Sbjct: 274 -----GNPQQPLPPPAG 285
>gi|116284398 WAS/WASL interacting protein family, member 1 [Homo
sapiens]
Length = 503
Score = 48.9 bits (115), Expect = 6e-06
Identities = 42/134 (31%), Positives = 47/134 (35%), Gaps = 15/134 (11%)
Query: 65 TQQPKPSGPSSHPREPPLPGAVTGGSLHFQEPPPLGAATAGSRHRQKP-PSPGSRHRWEP 123
+Q P P P S P PPLP + +G E P L P PSPG P
Sbjct: 304 SQAPPPPPPPSRPGPPPLPPSSSGN----DETPRLPQRNLSLSSSTPPLPSPGRSGPLPP 359
Query: 124 P----PPGAATATGSRHRREPPSPGATTAGSCHLRSSGSTGTRRAPSHPAALQVPYTREG 179
P PP R PP P + GS S P P+ V R G
Sbjct: 360 PPSERPPPPVRDPPGRSGPLPPPPPVSRNGST------SRALPATPQLPSRSGVDSPRSG 413
Query: 180 PREPTPPAGPQGFA 193
PR P PP P A
Sbjct: 414 PRPPLPPDRPSAGA 427
Score = 42.0 bits (97), Expect = 8e-04
Identities = 49/168 (29%), Positives = 63/168 (37%), Gaps = 38/168 (22%)
Query: 57 RPGHTAP--RTQQPKPSGP---SSHPREPPLPG----AVTGGSLH---------FQEPPP 98
RP ++P R P P GP S P PP PG A+ GGS+ F PP
Sbjct: 192 RPIQSSPHNRGSPPVPGGPRQPSPGPTPPPFPGNRGTALGGGSIRQSPLSSSSPFSNRPP 251
Query: 99 LGAATAGSRHRQKPPSP---GSR---HRWEPPPPG---------AATATGSRHRREPPSP 143
L + + + PP P G+R HR PPP + + + PP P
Sbjct: 252 LPPTPSRALDDKPPPPPPPVGNRPSIHREAVPPPPPQNNKPPVPSTPRPSASSQAPPPPP 311
Query: 144 GATTAGSCHL--RSSGSTGTRRAPSHPAALQ---VPYTREGPREPTPP 186
+ G L SSG+ T R P +L P G P PP
Sbjct: 312 PPSRPGPPPLPPSSSGNDETPRLPQRNLSLSSSTPPLPSPGRSGPLPP 359
Score = 40.8 bits (94), Expect = 0.002
Identities = 35/136 (25%), Positives = 49/136 (36%), Gaps = 12/136 (8%)
Query: 68 PKPSGPSSHPREPPLPGAVTGGSLHFQ---------EPPPLGAATAGSRHRQKPPSPGSR 118
P PS PP P S+H + PP+ + S Q PP P
Sbjct: 254 PTPSRALDDKPPPPPPPVGNRPSIHREAVPPPPPQNNKPPVPSTPRPSASSQAPPPPPPP 313
Query: 119 HRWEPPPPGAATATGSRHRREPPSPGATTAGSCHLRSSGSTGTRRAPSH---PAALQVPY 175
R PPP +++ R P + ++ + L S G +G P P ++ P
Sbjct: 314 SRPGPPPLPPSSSGNDETPRLPQRNLSLSSSTPPLPSPGRSGPLPPPPSERPPPPVRDPP 373
Query: 176 TREGPREPTPPAGPQG 191
R GP P PP G
Sbjct: 374 GRSGPLPPPPPVSRNG 389
Score = 40.4 bits (93), Expect = 0.002
Identities = 42/146 (28%), Positives = 51/146 (34%), Gaps = 16/146 (10%)
Query: 63 PRTQQPKPSGPSSHPR-EPPLPGAVTGGSLHFQEPPPL----GAATAGSRHRQKPPSPGS 117
P P+P S H R PP+PG S PPP G A G RQ P S S
Sbjct: 186 PVPSTPRPIQSSPHNRGSPPVPGGPRQPSPG-PTPPPFPGNRGTALGGGSIRQSPLSSSS 244
Query: 118 RHRWEPP-PPGAATATGSRHRREPPSPGATTAGSCHLRS-------SGSTGTRRAPSHPA 169
PP PP + A + PP P S H + + P A
Sbjct: 245 PFSNRPPLPPTPSRALDD--KPPPPPPPVGNRPSIHREAVPPPPPQNNKPPVPSTPRPSA 302
Query: 170 ALQVPYTREGPREPTPPAGPQGFAGS 195
+ Q P P P PP P +G+
Sbjct: 303 SSQAPPPPPPPSRPGPPPLPPSSSGN 328
Score = 38.1 bits (87), Expect = 0.011
Identities = 46/164 (28%), Positives = 56/164 (34%), Gaps = 42/164 (25%)
Query: 51 RSTGKRR--PGHTAPRTQQPKPSGPSSHPREPPLPGAVTGGSLHFQEPPPLGAATAGSRH 108
RST R G + P P S+ P PP G F P P H
Sbjct: 112 RSTANRDNDSGGSRPPLLPPGGRSTSAKPFSPP------SGPGRFPVPSP--------GH 157
Query: 109 RQKPPSPGSRHRWEPPPPGAATATGSRHRREPPSPGATTAGSCHLRSSGSTGTRRAPSHP 168
R PP P R+R PP P GS+ PP +T R S P
Sbjct: 158 RSGPPEP-QRNRMPPPRPD----VGSKPDSIPPPVPST--------------PRPIQSSP 198
Query: 169 AALQVPYTREGPREPTPPAGPQGFAGSFCAEGSRRGAEVGWGKL 212
P GPR+P+P P F G+ RG +G G +
Sbjct: 199 HNRGSPPVPGGPRQPSPGPTPPPFPGN-------RGTALGGGSI 235
>gi|38373695 WAS/WASL interacting protein family, member 1 [Homo
sapiens]
Length = 503
Score = 48.9 bits (115), Expect = 6e-06
Identities = 42/134 (31%), Positives = 47/134 (35%), Gaps = 15/134 (11%)
Query: 65 TQQPKPSGPSSHPREPPLPGAVTGGSLHFQEPPPLGAATAGSRHRQKP-PSPGSRHRWEP 123
+Q P P P S P PPLP + +G E P L P PSPG P
Sbjct: 304 SQAPPPPPPPSRPGPPPLPPSSSGN----DETPRLPQRNLSLSSSTPPLPSPGRSGPLPP 359
Query: 124 P----PPGAATATGSRHRREPPSPGATTAGSCHLRSSGSTGTRRAPSHPAALQVPYTREG 179
P PP R PP P + GS S P P+ V R G
Sbjct: 360 PPSERPPPPVRDPPGRSGPLPPPPPVSRNGST------SRALPATPQLPSRSGVDSPRSG 413
Query: 180 PREPTPPAGPQGFA 193
PR P PP P A
Sbjct: 414 PRPPLPPDRPSAGA 427
Score = 42.0 bits (97), Expect = 8e-04
Identities = 49/168 (29%), Positives = 63/168 (37%), Gaps = 38/168 (22%)
Query: 57 RPGHTAP--RTQQPKPSGP---SSHPREPPLPG----AVTGGSLH---------FQEPPP 98
RP ++P R P P GP S P PP PG A+ GGS+ F PP
Sbjct: 192 RPIQSSPHNRGSPPVPGGPRQPSPGPTPPPFPGNRGTALGGGSIRQSPLSSSSPFSNRPP 251
Query: 99 LGAATAGSRHRQKPPSP---GSR---HRWEPPPPG---------AATATGSRHRREPPSP 143
L + + + PP P G+R HR PPP + + + PP P
Sbjct: 252 LPPTPSRALDDKPPPPPPPVGNRPSIHREAVPPPPPQNNKPPVPSTPRPSASSQAPPPPP 311
Query: 144 GATTAGSCHL--RSSGSTGTRRAPSHPAALQ---VPYTREGPREPTPP 186
+ G L SSG+ T R P +L P G P PP
Sbjct: 312 PPSRPGPPPLPPSSSGNDETPRLPQRNLSLSSSTPPLPSPGRSGPLPP 359
Score = 40.8 bits (94), Expect = 0.002
Identities = 35/136 (25%), Positives = 49/136 (36%), Gaps = 12/136 (8%)
Query: 68 PKPSGPSSHPREPPLPGAVTGGSLHFQ---------EPPPLGAATAGSRHRQKPPSPGSR 118
P PS PP P S+H + PP+ + S Q PP P
Sbjct: 254 PTPSRALDDKPPPPPPPVGNRPSIHREAVPPPPPQNNKPPVPSTPRPSASSQAPPPPPPP 313
Query: 119 HRWEPPPPGAATATGSRHRREPPSPGATTAGSCHLRSSGSTGTRRAPSH---PAALQVPY 175
R PPP +++ R P + ++ + L S G +G P P ++ P
Sbjct: 314 SRPGPPPLPPSSSGNDETPRLPQRNLSLSSSTPPLPSPGRSGPLPPPPSERPPPPVRDPP 373
Query: 176 TREGPREPTPPAGPQG 191
R GP P PP G
Sbjct: 374 GRSGPLPPPPPVSRNG 389
Score = 40.4 bits (93), Expect = 0.002
Identities = 42/146 (28%), Positives = 51/146 (34%), Gaps = 16/146 (10%)
Query: 63 PRTQQPKPSGPSSHPR-EPPLPGAVTGGSLHFQEPPPL----GAATAGSRHRQKPPSPGS 117
P P+P S H R PP+PG S PPP G A G RQ P S S
Sbjct: 186 PVPSTPRPIQSSPHNRGSPPVPGGPRQPSPG-PTPPPFPGNRGTALGGGSIRQSPLSSSS 244
Query: 118 RHRWEPP-PPGAATATGSRHRREPPSPGATTAGSCHLRS-------SGSTGTRRAPSHPA 169
PP PP + A + PP P S H + + P A
Sbjct: 245 PFSNRPPLPPTPSRALDD--KPPPPPPPVGNRPSIHREAVPPPPPQNNKPPVPSTPRPSA 302
Query: 170 ALQVPYTREGPREPTPPAGPQGFAGS 195
+ Q P P P PP P +G+
Sbjct: 303 SSQAPPPPPPPSRPGPPPLPPSSSGN 328
Score = 38.1 bits (87), Expect = 0.011
Identities = 46/164 (28%), Positives = 56/164 (34%), Gaps = 42/164 (25%)
Query: 51 RSTGKRR--PGHTAPRTQQPKPSGPSSHPREPPLPGAVTGGSLHFQEPPPLGAATAGSRH 108
RST R G + P P S+ P PP G F P P H
Sbjct: 112 RSTANRDNDSGGSRPPLLPPGGRSTSAKPFSPP------SGPGRFPVPSP--------GH 157
Query: 109 RQKPPSPGSRHRWEPPPPGAATATGSRHRREPPSPGATTAGSCHLRSSGSTGTRRAPSHP 168
R PP P R+R PP P GS+ PP +T R S P
Sbjct: 158 RSGPPEP-QRNRMPPPRPD----VGSKPDSIPPPVPST--------------PRPIQSSP 198
Query: 169 AALQVPYTREGPREPTPPAGPQGFAGSFCAEGSRRGAEVGWGKL 212
P GPR+P+P P F G+ RG +G G +
Sbjct: 199 HNRGSPPVPGGPRQPSPGPTPPPFPGN-------RGTALGGGSI 235
>gi|209571537 proline-rich protein BstNI subfamily 2 [Homo sapiens]
Length = 416
Score = 48.5 bits (114), Expect = 8e-06
Identities = 44/136 (32%), Positives = 54/136 (39%), Gaps = 23/136 (16%)
Query: 64 RTQQPKPSGPSSHPREPPLPGAVTGG-------SLHFQEPP--PLGAATAGSRHRQKPPS 114
+ Q P P G + P+ PP PG G S + PP P G G Q PP
Sbjct: 262 KPQGPPPQG-GNKPQGPPPPGKPQGPPPQGGSKSRSSRSPPGKPQGPPPQGGNQPQGPPP 320
Query: 115 PGSRHRWEPPPPGAATATGSRHRREPPSPGATTAGSCHLRSSGSTGTRRAPSHPAALQVP 174
P + + PPP G G PP PG G + +R A S P Q P
Sbjct: 321 PPGKPQ-GPPPQGGNKPQG------PPPPGKPQGPP----PQGGSKSRSARSPPGKPQGP 369
Query: 175 YTREG--PREPTPPAG 188
+EG P+ P PPAG
Sbjct: 370 PQQEGNNPQGPPPPAG 385
Score = 48.1 bits (113), Expect = 1e-05
Identities = 43/135 (31%), Positives = 48/135 (35%), Gaps = 17/135 (12%)
Query: 62 APRTQQPKPSGPSSHPREPPLPGAVTGGSLHFQEPP---PLGAATAGSRHRQKPPSPGSR 118
AP KP GP S P +P P G PP P G G Q PP PG
Sbjct: 39 APPQGGNKPQGPPSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGNKPQGPPPPGKP 98
Query: 119 HRWEPPPPGAATATGSRHRREPPSPGATTAGSCHLRSSGSTGTRRAPSHPAALQVPYTRE 178
PPP G + R P SP G G + P P Q P +
Sbjct: 99 Q--GPPPQGDKS-------RSPRSPPGKPQGP---PPQGGNQPQGPPPPPGKPQGPPPQG 146
Query: 179 G--PREPTPPAGPQG 191
G P+ P PP PQG
Sbjct: 147 GNKPQGPPPPGKPQG 161
Score = 47.8 bits (112), Expect = 1e-05
Identities = 45/156 (28%), Positives = 58/156 (37%), Gaps = 36/156 (23%)
Query: 64 RTQQPKPSGPSSHPREPPLPGAVTGGSLHFQEPPPLG------AATAGSRHRQKPPSPGS 117
+ Q P P G + P+ PP PG G PPP G A + + + PP G+
Sbjct: 200 KPQGPPPQG-GNKPQGPPPPGKPQG-------PPPQGDNKSQSARSPPGKPQGPPPQGGN 251
Query: 118 RHRWEPPPPGAATAT---GSRHRREPPSPGATTA----GSCHLRSS-------------G 157
+ + PPPPG G + PP PG G RSS G
Sbjct: 252 QPQGPPPPPGKPQGPPPQGGNKPQGPPPPGKPQGPPPQGGSKSRSSRSPPGKPQGPPPQG 311
Query: 158 STGTRRAPSHPAALQVPYTREG--PREPTPPAGPQG 191
+ P P Q P + G P+ P PP PQG
Sbjct: 312 GNQPQGPPPPPGKPQGPPPQGGNKPQGPPPPGKPQG 347
Score = 47.0 bits (110), Expect = 2e-05
Identities = 45/161 (27%), Positives = 59/161 (36%), Gaps = 29/161 (18%)
Query: 56 RRPGHTAPRTQQPKPSGPSSHPREPPLPGAVTG----GSLHFQEPPPLG----------- 100
R P + Q P P G + PP PG G G Q PPP G
Sbjct: 109 RSPRSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGNKPQGPPPPGKPQGPPPQGDN 168
Query: 101 ----AATAGSRHRQKPPSPGSRHRWEPPPPG---AATATGSRHRREPPSPGATTAGSCHL 153
+ + + + PP G++ + PPPPG G + PP PG
Sbjct: 169 KSRSSRSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGNKPQGPPPPGKPQGPP--- 225
Query: 154 RSSGSTGTRRAPSHPAALQVPYTREG--PREPTPPAG-PQG 191
G ++ A S P Q P + G P+ P PP G PQG
Sbjct: 226 -PQGDNKSQSARSPPGKPQGPPPQGGNQPQGPPPPPGKPQG 265
Score = 41.6 bits (96), Expect = 0.001
Identities = 36/137 (26%), Positives = 47/137 (34%), Gaps = 19/137 (13%)
Query: 55 KRRPGHTAP-RTQQPKPSGPSSHPREPPLPGAVTG----GSLHFQEPPPLGAATAGSRHR 109
K R + P + Q P P G + PP PG G G Q PPP G + +
Sbjct: 293 KSRSSRSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGNKPQGPPPPG------KPQ 346
Query: 110 QKPPSPGSRHRWEPPPPGAATATGSRHRREPPSPGATTAGSCHLRSSGSTGTRRAPSHPA 169
PP GS+ R PPG + P P G+ + G + P P
Sbjct: 347 GPPPQGGSKSRSARSPPGKPQGPPQQEGNNPQGPPPPAGGNPQQPQAPPAGQPQGPPRPP 406
Query: 170 ALQVPYTREGPREPTPP 186
+G R PP
Sbjct: 407 --------QGGRPSRPP 415
Score = 37.4 bits (85), Expect = 0.019
Identities = 33/109 (30%), Positives = 39/109 (35%), Gaps = 18/109 (16%)
Query: 98 PLGAATAGSRHRQKPPSP-----------GSRHRWEPPPPG---AATATGSRHRREPPSP 143
P GA G Q PPSP G++ + PPPPG G + PP P
Sbjct: 36 PQGAPPQGGNKPQGPPSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGNKPQGPPPP 95
Query: 144 GATTAGSCHLRSSGSTGTRRAPSHPAALQVPYTREGPREPTPPAG-PQG 191
G + S R P P P P+ P PP G PQG
Sbjct: 96 GKPQGPP--PQGDKSRSPRSPPGKPQG-PPPQGGNQPQGPPPPPGKPQG 141
>gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens]
Length = 1464
Score = 47.8 bits (112), Expect = 1e-05
Identities = 75/254 (29%), Positives = 90/254 (35%), Gaps = 67/254 (26%)
Query: 47 RGLCRSTGKRRPGHTAPR--------TQQPKPSGPSSHPREPPLPGAVTGGSLHFQEPPP 98
RGL G RPG P T P GP+ P PGAV
Sbjct: 304 RGLPGERG--RPGAPGPAGARGNDGATGAAGPPGPTGPAGPPGFPGAVGAKG-------- 353
Query: 99 LGAATAGSRHRQKPPSPGSRHRWEPPPPGAATATG-SRHRREPPSPGATTAGSCHLRSSG 157
A G R + P R EP PPG A A G + + PGA A +G
Sbjct: 354 -EAGPQGPRGSEGPQGV----RGEPGPPGPAGAAGPAGNPGADGQPGAKGA-------NG 401
Query: 158 STGTRRAPSHPAALQVPYTREGPREPTPPAGPQGFAGSFCAEGSRRGAEVGWGKLEPQGT 217
+ G AP P A GP+ P P GP+G +G A GS+ + G K EP
Sbjct: 402 APGIAGAPGFPGARGP----SGPQGPGGPPGPKGNSGEPGAPGSK--GDTG-AKGEP--- 451
Query: 218 RRTGSLGVDSSPLSETLGPAQCGSGRRRACSVLHHHCDGIRFRDCHCAPSACPGPTQDPQ 277
G +GV P GPA G+R A P+ PGP P
Sbjct: 452 ---GPVGVQGPP-----GPAG-EEGKRGARG--------------EPGPTGLPGP---PG 485
Query: 278 AGLCTGQEGYPGTD 291
G G+PG D
Sbjct: 486 ERGGPGSRGFPGAD 499
Score = 47.4 bits (111), Expect = 2e-05
Identities = 53/179 (29%), Positives = 60/179 (33%), Gaps = 32/179 (17%)
Query: 68 PKPSGPSSHPREPPLPGAVTGGSLHFQEPPPLGAATAGSRHRQKPPSPGSRHRWEPPP-- 125
P P G P EP PGA G + + PP KP PG R P
Sbjct: 196 PGPQGFQGPPGEPGEPGA--SGPMGPRGPPGPPGKNGDDGEAGKPGRPGERGPPGPQGAR 253
Query: 126 --PGAATATGSRHRR-------------------EPPSPGATTAGSCHLRSSGSTGTRRA 164
PG A G + R EP SPG A + G G R
Sbjct: 254 GLPGTAGLPGMKGHRGFSGLDGAKGDAGPAGPKGEPGSPGENGAPG-QMGPRGLPGERGR 312
Query: 165 PSHPAALQVPYT-----REGPREPTPPAGPQGFAGSFCAEGSRRGAEVGWGKLEPQGTR 218
P P GP PT PAGP GF G+ A+G G + G PQG R
Sbjct: 313 PGAPGPAGARGNDGATGAAGPPGPTGPAGPPGFPGAVGAKG-EAGPQGPRGSEGPQGVR 370
Score = 42.7 bits (99), Expect = 4e-04
Identities = 43/155 (27%), Positives = 53/155 (34%), Gaps = 13/155 (8%)
Query: 47 RGLCRSTGKRRPGHTAPRTQQPKPSGPSSHPREPPLPG-AVTGGSLHFQEPPPLGAATAG 105
RG + G P A P P+GP P E PG A G+ P + G
Sbjct: 493 RGFPGADGVAGPKGPAGERGSPGPAGPKGSPGEAGRPGEAGLPGAKGLTGSP----GSPG 548
Query: 106 SRHRQKPPSPGSRHRWEPPPPGAATATGSRHRREPPSPGATTAGSCHLRSSGSTGTRRAP 165
+ PP P + P PPG A G P P G G R P
Sbjct: 549 PDGKTGPPGPAGQD-GRPGPPGPPGARGQAGVMGFPGPKGAAG------EPGKAGERGVP 601
Query: 166 SHPAALQVPYTREGPREPTPPAGPQGFAGSFCAEG 200
P A+ P ++G P GP G AG +G
Sbjct: 602 GPPGAVG-PAGKDGEAGAQGPPGPAGPAGERGEQG 635
Score = 41.6 bits (96), Expect = 0.001
Identities = 48/153 (31%), Positives = 53/153 (34%), Gaps = 17/153 (11%)
Query: 58 PGHTAPRTQQPKPSGPSSHPREPPLPGAVTGGSLHFQEPPPLGAATAGSRHRQKPPSPGS 117
PG A R P PSG ++ P PP P GG E P G G PP P
Sbjct: 877 PG-AAGRVGPPGPSG-NAGPPGPPGPAGKEGGKGPRGETGPAGRP--GEVGPPGPPGPAG 932
Query: 118 RHRWEPPPPGAATATGSRHRREPPSPGATTAGSCHLRSSGSTGTRRAPSHPA-----ALQ 172
+ P G A A G+ P P + G G R P P Q
Sbjct: 933 E-KGSPGADGPAGAPGT------PGPQGIAGQRGVVGLPGQRGERGFPGLPGPSGEPGKQ 985
Query: 173 VPYTREGPREPTPPAGPQGFAGSFCAEGSRRGA 205
P G R P P GP G AG E R GA
Sbjct: 986 GPSGASGERGPPGPMGPPGLAGP-PGESGREGA 1017
Score = 41.2 bits (95), Expect = 0.001
Identities = 54/207 (26%), Positives = 67/207 (32%), Gaps = 42/207 (20%)
Query: 97 PPLGAATAGSRHRQKPPSPGSRHRWEPPPPGAATATGSRHRREPPSPGATTAGSCHLRSS 156
PP A G + P P P GA A G R PP P +
Sbjct: 771 PPGPAGAPGDKGESGPSGPAG-------PTGARGAPGDRGEPGPPGPAGFAGPP---GAD 820
Query: 157 GSTGTRRAPSHPAALQVPYTREGPREPTPPAGPQGFAGSFCAEGSR-----------RGA 205
G G + P A GP P PAGP G G+ A G++ G
Sbjct: 821 GQPGAKGEPGDAGAKG----DAGPPGPAGPAGPPGPIGNVGAPGAKGARGSAGPPGATGF 876
Query: 206 EVGWGKLEPQGTRRTGSLGVDSSPLSETLGPA--QCGSGRRRACSVLHHHCDGIRFRDCH 263
G++ P G +G+ G P GPA + G G R G R
Sbjct: 877 PGAAGRVGPPGP--SGNAGPPGPP-----GPAGKEGGKGPRGE--------TGPAGRPGE 921
Query: 264 CAPSACPGPTQDPQAGLCTGQEGYPGT 290
P PGP + + G G PGT
Sbjct: 922 VGPPGPPGPAGEKGSPGADGPAGAPGT 948
Score = 41.2 bits (95), Expect = 0.001
Identities = 66/238 (27%), Positives = 82/238 (34%), Gaps = 22/238 (9%)
Query: 48 GLCRSTGKRR-PGHTAPRTQQPKPSGPSSHPREPPLPGAVTGGSLHFQEPPPLGAATAGS 106
GL G+R PG P + +P GPS E PG + PP L S
Sbjct: 962 GLPGQRGERGFPGLPGP-SGEPGKQGPSGASGERGPPGPMG--------PPGLAGPPGES 1012
Query: 107 RHRQKPPSPGSRHRWEPPPPGAATATGSRHRREPP-SPGATTAGSCHLRSSGSTGTRRAP 165
P + GS R PGA G PP +PGA A + +G +G R
Sbjct: 1013 GREGAPGAEGSPGR--DGSPGAKGDRGETGPAGPPGAPGAPGAPG-PVGPAGKSGDR-GE 1068
Query: 166 SHPAALQVPYTREGPREPTPPAGPQGFAGSFCAEGSR-----RGAEVGWGKLEPQGTRRT 220
+ PA P G R P P GP+G G +G R RG G P G+
Sbjct: 1069 TGPAGPAGPVGPVGARGPAGPQGPRGDKGETGEQGDRGIKGHRGFSGLQGPPGPPGSPGE 1128
Query: 221 GSLGVDSSPLSETLGPAQCGSGRRRACSVLHHHC--DGIRFRDCHCAPSACPGPTQDP 276
S P P G+ + + L G R R P PGP P
Sbjct: 1129 QGPSGASGPAGPRGPPGSAGAPGKDGLNGLPGPIGPPGPRGRTGDAGPVGPPGPPGPP 1186
Score = 35.8 bits (81), Expect = 0.055
Identities = 68/274 (24%), Positives = 80/274 (29%), Gaps = 62/274 (22%)
Query: 58 PGHTAPRTQQPK--PSGPSSHPREPPLPGAVTGGSLHFQEPPPLG-------AATAGSRH 108
PG P Q P GP + EP PG+ G + EP P+G A G R
Sbjct: 412 PGARGPSGPQGPGGPPGPKGNSGEPGAPGS-KGDTGAKGEPGPVGVQGPPGPAGEEGKRG 470
Query: 109 RQKPPSP-----------GSRHRWEPPPPGAATATGSRHRREPPSPGATTAGSCHLRSSG 157
+ P P G R P G A G R P P G
Sbjct: 471 ARGEPGPTGLPGPPGERGGPGSRGFPGADGVAGPKGPAGERGSPGPAGPKGSPGEAGRPG 530
Query: 158 STGTRRA-----------PSHPAALQVPYTREG-PREPTPP-----AGPQGFAGSFCAEG 200
G A P P ++G P P PP AG GF G A G
Sbjct: 531 EAGLPGAKGLTGSPGSPGPDGKTGPPGPAGQDGRPGPPGPPGARGQAGVMGFPGPKGAAG 590
Query: 201 S-----RRGAEVGWGKLEPQGTRRTGSLGVDSSPLSETLGPAQCGSGRRRACSVLHHHCD 255
RG G + P G + G G P GPA R
Sbjct: 591 EPGKAGERGVPGPPGAVGPAG--KDGEAGAQGPP-----GPAGPAGERGEQGPAGSPGFQ 643
Query: 256 GIRFRDCHCAPSACPGPTQDPQAGLCTGQEGYPG 289
G+ PGP P G++G PG
Sbjct: 644 GL------------PGPAGPPGEAGKPGEQGVPG 665
Score = 34.7 bits (78), Expect = 0.12
Identities = 42/148 (28%), Positives = 49/148 (33%), Gaps = 34/148 (22%)
Query: 58 PGHTAPRTQQPKPSGPSSH--PREPPLPGAVTGGSLHFQEPPPLG-AATAGSRHRQKPPS 114
PG+ + P P S P +PG L P P G AG + P
Sbjct: 703 PGNDGAKGDAGAPGAPGSQGAPGLQGMPGERGAAGL----PGPKGDRGDAGPKGADGSPG 758
Query: 115 PGSRHRWEPP--PPGAATATGSRHRREPPSPGATTAGSCHLRSSGSTGTRRAPSHPAALQ 172
P PPG A A G + P P +G TG R AP
Sbjct: 759 KDGVRGLTGPIGPPGPAGAPGDKGESGPSGP------------AGPTGARGAPGDRG--- 803
Query: 173 VPYTREGPREPTPPAGPQGFAGSFCAEG 200
EP PP GP GFAG A+G
Sbjct: 804 ---------EPGPP-GPAGFAGPPGADG 821
Score = 33.1 bits (74), Expect = 0.36
Identities = 50/191 (26%), Positives = 66/191 (34%), Gaps = 42/191 (21%)
Query: 68 PKPSGPSSHPRE------PPLPGAVTGGSLHFQ---EPPPLGAATAGSRHRQKPP-SPGS 117
P P G + P + P PGAV + + PP A AG R Q P SPG
Sbjct: 583 PGPKGAAGEPGKAGERGVPGPPGAVGPAGKDGEAGAQGPPGPAGPAGERGEQGPAGSPGF 642
Query: 118 RHRWEPPPP----------------GAATATGSRHRR---------EPPSPGATTAGSCH 152
+ P P GA +G+R R PP P +
Sbjct: 643 QGLPGPAGPPGEAGKPGEQGVPGDLGAPGPSGARGERGFPGERGVQGPPGPAGPRGANGA 702
Query: 153 LRSSGSTGTRRAPSHPAALQVPYTREGPREP-----TPPAGPQGFAGSFCAEGS--RRGA 205
+ G+ G AP P + P + P E P G +G AG A+GS + G
Sbjct: 703 PGNDGAKGDAGAPGAPGSQGAPGLQGMPGERGAAGLPGPKGDRGDAGPKGADGSPGKDGV 762
Query: 206 EVGWGKLEPQG 216
G + P G
Sbjct: 763 RGLTGPIGPPG 773
>gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Homo
sapiens]
Length = 1487
Score = 47.8 bits (112), Expect = 1e-05
Identities = 60/208 (28%), Positives = 71/208 (34%), Gaps = 43/208 (20%)
Query: 57 RPGHTAPRTQQPKPSGPSSHPREPPLPGAVTGGSLHFQEPPPLGAA--TAGSRHRQKPPS 114
+PG P P P GP+ P P PGA E P GA R +P +
Sbjct: 349 QPGPAGP----PGPVGPAGGPGFPGAPGAKG-------EAGPTGARGPEGAQGPRGEPGT 397
Query: 115 PGSRH----------------RWEPPPPGAATATGSRHRREPPSPGATTAGSCHLRSSGS 158
PGS + PG A A G R PP P T L G
Sbjct: 398 PGSPGPAGASGNPGTDGIPGAKGSAGAPGIAGAPGFPGPRGPPGPQGATGP---LGPKGQ 454
Query: 159 TGTRRAPSHPAALQVPYTREGPREPTPPAGPQGFAGSFCAEGSR--RGAEVGWGKLEPQG 216
TG +GP+ PAGPQG G EG R RG G G + P G
Sbjct: 455 TGEPGIAGFKG-------EQGPKGEPGPAGPQGAPGPAGEEGKRGARGEPGGVGPIGPPG 507
Query: 217 TRRTGSLGVDSSPLSETLGPAQCGSGRR 244
R G+ G P + L + G R
Sbjct: 508 ER--GAPGNRGFPGQDGLAGPKGAPGER 533
Score = 40.8 bits (94), Expect = 0.002
Identities = 64/245 (26%), Positives = 75/245 (30%), Gaps = 41/245 (16%)
Query: 68 PKPSGPSSHPREPPLPGAVTGGS-LHFQEPPPLGAATAGSRHRQKPPSPGSRHRWEPP-P 125
P P GPS P P P VTG + PP G+ R PP GS PP P
Sbjct: 863 PGPQGPSGAPG-PQGPTGVTGPKGARGAQGPPGATGFPGAAGRVGPP--GSNGNPGPPGP 919
Query: 126 PGAATATGSRHRREPPSPGATTAGSCHLRSSGSTGTRRAPSHPAALQVPYTREGPREPTP 185
PG + G + R P +G G + P +GP
Sbjct: 920 PGPSGKDGPKGARGDSGPPGRAGEPGLQGPAGPPGEKGEPGD----------DGPSGAEG 969
Query: 186 PAGPQGFAGSF--------------------CAEGSRRGAEVGWGKLEPQG-TRRTGSLG 224
P GPQG AG E ++GA G P G G G
Sbjct: 970 PPGPQGLAGQRGIVGLPGQRGERGFPGLPGPSGEPGKQGAPGASGDRGPPGPVGPPGLTG 1029
Query: 225 VDSSPLSETLGPAQCGSGRRRACSVLHHHCDGIRFRDCHCAPSACPGPTQDPQAGLCTGQ 284
P E A GR A V G R PGP P TG+
Sbjct: 1030 PAGEPGREGSPGADGPPGRDGAAGV-----KGDRGETGAVGAPGAPGPPGSPGPAGPTGK 1084
Query: 285 EGYPG 289
+G G
Sbjct: 1085 QGDRG 1089
Score = 39.7 bits (91), Expect = 0.004
Identities = 75/285 (26%), Positives = 96/285 (33%), Gaps = 55/285 (19%)
Query: 41 SETGWFRGLCRSTGKRRPGHTAPRTQQPKPSGPSSHPREPPLPGAVTGGSLHFQEPP-PL 99
++ G +G G R P A P P G +P EP PG G + + PP P
Sbjct: 194 AQLGVMQGPMGPMGPRGPPGPAGA---PGPQGFQGNPGEPGEPGV--SGPMGPRGPPGPP 248
Query: 100 G-------AATAGSRHRQKPPSPGSRHRWEPPPPGAATATGSRHRREPPSPGAT-TAGSC 151
G A G + PP P R P PG G HR P GA AG+
Sbjct: 249 GKPGDDGEAGKPGKAGERGPPGPQGA-RGFPGTPGLPGVKG--HRGYPGLDGAKGEAGAP 305
Query: 152 HLRS-SGSTGTRRAPSHPAALQVPYTR-----------------EGPREPTPPAGPQGFA 193
++ SGS G +P +P R GP P P GP G
Sbjct: 306 GVKGESGSPGENGSPGPMGPRGLPGERGRTGPAGAAGARGNDGQPGPAGPPGPVGPAGGP 365
Query: 194 GSFCAEGSR--------RGAEVGWG-KLEPQGTRRTGSLGVDSSPLSETLGPAQCGSGRR 244
G A G++ RG E G + EP G G +P ++ + A+ +G
Sbjct: 366 GFPGAPGAKGEAGPTGARGPEGAQGPRGEPGTPGSPGPAGASGNPGTDGIPGAKGSAG-- 423
Query: 245 RACSVLHHHCDGIRFRDCHCAPSACPGPTQDPQAGLCTGQEGYPG 289
GI P PGP GQ G PG
Sbjct: 424 ---------APGIAGAPGFPGPRGPPGPQGATGPLGPKGQTGEPG 459
Score = 39.3 bits (90), Expect = 0.005
Identities = 45/160 (28%), Positives = 55/160 (34%), Gaps = 32/160 (20%)
Query: 63 PRTQQPK----PSGPSSHPREPPLPGAVTGGSLHFQEPPPLGAATAGSRHRQKPPSPGSR 118
P T PK P+GP P L G P G + + P
Sbjct: 725 PGTDGPKGASGPAGPPGAQGPPGLQGMPGERGAAGIAGPKGDRGDVGEKGPEGAPGKDGG 784
Query: 119 HRWEPP--PPGAATATGSRHRREPPSPGATTAGSCHLRSSGSTGTRRAPSHPAALQVPYT 176
P PPG A A G + PP P +GS G R AP
Sbjct: 785 RGLTGPIGPPGPAGANGEKGEVGPPGP------------AGSAGARGAP----------- 821
Query: 177 REGPREPTPPAGPQGFAGSFCAEGSRRGAEVGWGKLEPQG 216
G R T P GP GFAG A+G + GA+ G+ +G
Sbjct: 822 --GERGETGPPGPAGFAGPPGADG-QPGAKGEQGEAGQKG 858
Score = 38.9 bits (89), Expect = 0.006
Identities = 55/198 (27%), Positives = 70/198 (35%), Gaps = 29/198 (14%)
Query: 57 RPGHTAPRTQQ--------PKPSGPSSHPR---EPPLPGAVTGGSLHFQEP------PPL 99
RPG P+ + P P G + P E LPGA L ++ PP
Sbjct: 586 RPGPPGPQGARGQPGVMGFPGPKGANGEPGKAGEKGLPGAPGLRGLPGKDGETGAAGPPG 645
Query: 100 GAATAGSRHRQKPPSPGSRHRWEPPPPGAATATGSRHRREPPSPGATTAGSCHLRSSGST 159
A AG R Q P P S + P PPG G + P G
Sbjct: 646 PAGPAGERGEQGAPGP-SGFQGLPGPPGPPGEGGKPGDQGVPGEAGAPGLVGPRGERGFP 704
Query: 160 GTRRAP-----SHPAALQVPYTREGPREPTPPAGPQGFAGSFCAEG--SRRGAEVGWGKL 212
G R +P P L +GP+ + PAGP G G +G RGA G
Sbjct: 705 GERGSPGAQGLQGPRGLPGTPGTDGPKGASGPAGPPGAQGPPGLQGMPGERGAA---GIA 761
Query: 213 EPQGTR-RTGSLGVDSSP 229
P+G R G G + +P
Sbjct: 762 GPKGDRGDVGEKGPEGAP 779
Score = 36.6 bits (83), Expect = 0.032
Identities = 60/233 (25%), Positives = 72/233 (30%), Gaps = 35/233 (15%)
Query: 68 PKPSGPSSHPREPPLPG----AVTGGSLHFQEPPPLGAATA--GSRHRQKPPSPGSR--- 118
P P GP P P L G + GG LG G + PP P
Sbjct: 161 PGPPGPPGPPGPPGLGGNFAAQMAGGFDEKAGGAQLGVMQGPMGPMGPRGPPGPAGAPGP 220
Query: 119 --HRWEPPPPGAATATGSRHRREPPSPGATTAGSCHLRSSGSTGTRRAPSHPAALQVPYT 176
+ P PG +G R PP P G G R P A P T
Sbjct: 221 QGFQGNPGEPGEPGVSGPMGPRGPPGPPGKPGDDGEAGKPGKAGERGPPGPQGARGFPGT 280
Query: 177 REGPREPTPPAGPQGFAGSFCAEGSRRGAEVGWGKLEPQGTRRTGSLGVDSSPLSETLGP 236
P G +G+ G A+G E G P +GS G + SP +GP
Sbjct: 281 PGLP----GVKGHRGYPGLDGAKG-----EAG----APGVKGESGSPGENGSP--GPMGP 325
Query: 237 AQCGSGRRRACSVLHHHCDGIRFRDCHCAPSACPGPTQDPQAGLCTGQEGYPG 289
R R G R D P+ PGP G G+PG
Sbjct: 326 RGLPGERGRTGPA---GAAGARGNDGQPGPAGPPGPVGP------AGGPGFPG 369
Score = 31.6 bits (70), Expect = 1.0
Identities = 26/89 (29%), Positives = 32/89 (35%), Gaps = 10/89 (11%)
Query: 140 PPSPGATTAGSCHLRSSGSTGTRRAPSHPAALQVPYTREGPREPTPPA--GPQGFAGSFC 197
PP P G G + AP P T P P PP GP G G+F
Sbjct: 121 PPGPQGPAGEQGPRGDRGDKGEKGAPGPRGRDGEPGTPGNPGPPGPPGPPGPPGLGGNFA 180
Query: 198 A------EGSRRGAEVG--WGKLEPQGTR 218
A + GA++G G + P G R
Sbjct: 181 AQMAGGFDEKAGGAQLGVMQGPMGPMGPR 209
Score = 28.9 bits (63), Expect = 6.7
Identities = 46/179 (25%), Positives = 57/179 (31%), Gaps = 50/179 (27%)
Query: 58 PGHTAPRTQQPKPSGPSSHPREPPLPGAVTGGSLHFQEPPPLG-AATAGSRHRQKPPSPG 116
PG P P P+GP+ + GA P+G + AG+R Q P P
Sbjct: 1067 PGAPGP-PGSPGPAGPTGKQGDRGEAGA----------QGPMGPSGPAGARGIQGPQGPR 1115
Query: 117 SRHRWEPPPPGAATATGSRHRREPPSPGATTAGSCHLRSSGSTGTRRAPSHPA-----AL 171
+ E PG G R G TG + P P
Sbjct: 1116 G-DKGEAGEPGERGLKGHR---------------------GFTGLQGLPGPPGPSGDQGA 1153
Query: 172 QVPYTREGPREPTPPAGPQGFAGSFCAEGSRRGAEVGWGKLEPQGTR-RTGSLGVDSSP 229
P GPR P P GP G + GA G + P G R R+G G P
Sbjct: 1154 SGPAGPSGPRGPPGPVGPSG----------KDGANGIPGPIGPPGPRGRSGETGPAGPP 1202
>gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Homo
sapiens]
Length = 1418
Score = 47.8 bits (112), Expect = 1e-05
Identities = 60/208 (28%), Positives = 71/208 (34%), Gaps = 43/208 (20%)
Query: 57 RPGHTAPRTQQPKPSGPSSHPREPPLPGAVTGGSLHFQEPPPLGAA--TAGSRHRQKPPS 114
+PG P P P GP+ P P PGA E P GA R +P +
Sbjct: 280 QPGPAGP----PGPVGPAGGPGFPGAPGAKG-------EAGPTGARGPEGAQGPRGEPGT 328
Query: 115 PGSRH----------------RWEPPPPGAATATGSRHRREPPSPGATTAGSCHLRSSGS 158
PGS + PG A A G R PP P T L G
Sbjct: 329 PGSPGPAGASGNPGTDGIPGAKGSAGAPGIAGAPGFPGPRGPPGPQGATGP---LGPKGQ 385
Query: 159 TGTRRAPSHPAALQVPYTREGPREPTPPAGPQGFAGSFCAEGSR--RGAEVGWGKLEPQG 216
TG +GP+ PAGPQG G EG R RG G G + P G
Sbjct: 386 TGEPGIAGFKG-------EQGPKGEPGPAGPQGAPGPAGEEGKRGARGEPGGVGPIGPPG 438
Query: 217 TRRTGSLGVDSSPLSETLGPAQCGSGRR 244
R G+ G P + L + G R
Sbjct: 439 ER--GAPGNRGFPGQDGLAGPKGAPGER 464
Score = 40.8 bits (94), Expect = 0.002
Identities = 64/245 (26%), Positives = 75/245 (30%), Gaps = 41/245 (16%)
Query: 68 PKPSGPSSHPREPPLPGAVTGGS-LHFQEPPPLGAATAGSRHRQKPPSPGSRHRWEPP-P 125
P P GPS P P P VTG + PP G+ R PP GS PP P
Sbjct: 794 PGPQGPSGAPG-PQGPTGVTGPKGARGAQGPPGATGFPGAAGRVGPP--GSNGNPGPPGP 850
Query: 126 PGAATATGSRHRREPPSPGATTAGSCHLRSSGSTGTRRAPSHPAALQVPYTREGPREPTP 185
PG + G + R P +G G + P +GP
Sbjct: 851 PGPSGKDGPKGARGDSGPPGRAGEPGLQGPAGPPGEKGEPGD----------DGPSGAEG 900
Query: 186 PAGPQGFAGSF--------------------CAEGSRRGAEVGWGKLEPQG-TRRTGSLG 224
P GPQG AG E ++GA G P G G G
Sbjct: 901 PPGPQGLAGQRGIVGLPGQRGERGFPGLPGPSGEPGKQGAPGASGDRGPPGPVGPPGLTG 960
Query: 225 VDSSPLSETLGPAQCGSGRRRACSVLHHHCDGIRFRDCHCAPSACPGPTQDPQAGLCTGQ 284
P E A GR A V G R PGP P TG+
Sbjct: 961 PAGEPGREGSPGADGPPGRDGAAGV-----KGDRGETGAVGAPGAPGPPGSPGPAGPTGK 1015
Query: 285 EGYPG 289
+G G
Sbjct: 1016 QGDRG 1020
Score = 39.7 bits (91), Expect = 0.004
Identities = 75/285 (26%), Positives = 96/285 (33%), Gaps = 55/285 (19%)
Query: 41 SETGWFRGLCRSTGKRRPGHTAPRTQQPKPSGPSSHPREPPLPGAVTGGSLHFQEPP-PL 99
++ G +G G R P A P P G +P EP PG G + + PP P
Sbjct: 125 AQLGVMQGPMGPMGPRGPPGPAGA---PGPQGFQGNPGEPGEPGV--SGPMGPRGPPGPP 179
Query: 100 G-------AATAGSRHRQKPPSPGSRHRWEPPPPGAATATGSRHRREPPSPGAT-TAGSC 151
G A G + PP P R P PG G HR P GA AG+
Sbjct: 180 GKPGDDGEAGKPGKAGERGPPGPQGA-RGFPGTPGLPGVKG--HRGYPGLDGAKGEAGAP 236
Query: 152 HLRS-SGSTGTRRAPSHPAALQVPYTR-----------------EGPREPTPPAGPQGFA 193
++ SGS G +P +P R GP P P GP G
Sbjct: 237 GVKGESGSPGENGSPGPMGPRGLPGERGRTGPAGAAGARGNDGQPGPAGPPGPVGPAGGP 296
Query: 194 GSFCAEGSR--------RGAEVGWG-KLEPQGTRRTGSLGVDSSPLSETLGPAQCGSGRR 244
G A G++ RG E G + EP G G +P ++ + A+ +G
Sbjct: 297 GFPGAPGAKGEAGPTGARGPEGAQGPRGEPGTPGSPGPAGASGNPGTDGIPGAKGSAG-- 354
Query: 245 RACSVLHHHCDGIRFRDCHCAPSACPGPTQDPQAGLCTGQEGYPG 289
GI P PGP GQ G PG
Sbjct: 355 ---------APGIAGAPGFPGPRGPPGPQGATGPLGPKGQTGEPG 390
Score = 39.3 bits (90), Expect = 0.005
Identities = 45/160 (28%), Positives = 55/160 (34%), Gaps = 32/160 (20%)
Query: 63 PRTQQPK----PSGPSSHPREPPLPGAVTGGSLHFQEPPPLGAATAGSRHRQKPPSPGSR 118
P T PK P+GP P L G P G + + P
Sbjct: 656 PGTDGPKGASGPAGPPGAQGPPGLQGMPGERGAAGIAGPKGDRGDVGEKGPEGAPGKDGG 715
Query: 119 HRWEPP--PPGAATATGSRHRREPPSPGATTAGSCHLRSSGSTGTRRAPSHPAALQVPYT 176
P PPG A A G + PP P +GS G R AP
Sbjct: 716 RGLTGPIGPPGPAGANGEKGEVGPPGP------------AGSAGARGAP----------- 752
Query: 177 REGPREPTPPAGPQGFAGSFCAEGSRRGAEVGWGKLEPQG 216
G R T P GP GFAG A+G + GA+ G+ +G
Sbjct: 753 --GERGETGPPGPAGFAGPPGADG-QPGAKGEQGEAGQKG 789
Score = 38.9 bits (89), Expect = 0.006
Identities = 55/198 (27%), Positives = 70/198 (35%), Gaps = 29/198 (14%)
Query: 57 RPGHTAPRTQQ--------PKPSGPSSHPR---EPPLPGAVTGGSLHFQEP------PPL 99
RPG P+ + P P G + P E LPGA L ++ PP
Sbjct: 517 RPGPPGPQGARGQPGVMGFPGPKGANGEPGKAGEKGLPGAPGLRGLPGKDGETGAAGPPG 576
Query: 100 GAATAGSRHRQKPPSPGSRHRWEPPPPGAATATGSRHRREPPSPGATTAGSCHLRSSGST 159
A AG R Q P P S + P PPG G + P G
Sbjct: 577 PAGPAGERGEQGAPGP-SGFQGLPGPPGPPGEGGKPGDQGVPGEAGAPGLVGPRGERGFP 635
Query: 160 GTRRAP-----SHPAALQVPYTREGPREPTPPAGPQGFAGSFCAEG--SRRGAEVGWGKL 212
G R +P P L +GP+ + PAGP G G +G RGA G
Sbjct: 636 GERGSPGAQGLQGPRGLPGTPGTDGPKGASGPAGPPGAQGPPGLQGMPGERGAA---GIA 692
Query: 213 EPQGTR-RTGSLGVDSSP 229
P+G R G G + +P
Sbjct: 693 GPKGDRGDVGEKGPEGAP 710
Score = 36.6 bits (83), Expect = 0.032
Identities = 60/233 (25%), Positives = 72/233 (30%), Gaps = 35/233 (15%)
Query: 68 PKPSGPSSHPREPPLPG----AVTGGSLHFQEPPPLGAATA--GSRHRQKPPSPGSR--- 118
P P GP P P L G + GG LG G + PP P
Sbjct: 92 PGPPGPPGPPGPPGLGGNFAAQMAGGFDEKAGGAQLGVMQGPMGPMGPRGPPGPAGAPGP 151
Query: 119 --HRWEPPPPGAATATGSRHRREPPSPGATTAGSCHLRSSGSTGTRRAPSHPAALQVPYT 176
+ P PG +G R PP P G G R P A P T
Sbjct: 152 QGFQGNPGEPGEPGVSGPMGPRGPPGPPGKPGDDGEAGKPGKAGERGPPGPQGARGFPGT 211
Query: 177 REGPREPTPPAGPQGFAGSFCAEGSRRGAEVGWGKLEPQGTRRTGSLGVDSSPLSETLGP 236
P G +G+ G A+G E G P +GS G + SP +GP
Sbjct: 212 PGLP----GVKGHRGYPGLDGAKG-----EAG----APGVKGESGSPGENGSP--GPMGP 256
Query: 237 AQCGSGRRRACSVLHHHCDGIRFRDCHCAPSACPGPTQDPQAGLCTGQEGYPG 289
R R G R D P+ PGP G G+PG
Sbjct: 257 RGLPGERGRTGPA---GAAGARGNDGQPGPAGPPGPVGP------AGGPGFPG 300
Score = 31.6 bits (70), Expect = 1.0
Identities = 26/89 (29%), Positives = 32/89 (35%), Gaps = 10/89 (11%)
Query: 140 PPSPGATTAGSCHLRSSGSTGTRRAPSHPAALQVPYTREGPREPTPPA--GPQGFAGSFC 197
PP P G G + AP P T P P PP GP G G+F
Sbjct: 52 PPGPQGPAGEQGPRGDRGDKGEKGAPGPRGRDGEPGTPGNPGPPGPPGPPGPPGLGGNFA 111
Query: 198 A------EGSRRGAEVG--WGKLEPQGTR 218
A + GA++G G + P G R
Sbjct: 112 AQMAGGFDEKAGGAQLGVMQGPMGPMGPR 140
Score = 28.9 bits (63), Expect = 6.7
Identities = 46/179 (25%), Positives = 57/179 (31%), Gaps = 50/179 (27%)
Query: 58 PGHTAPRTQQPKPSGPSSHPREPPLPGAVTGGSLHFQEPPPLG-AATAGSRHRQKPPSPG 116
PG P P P+GP+ + GA P+G + AG+R Q P P
Sbjct: 998 PGAPGP-PGSPGPAGPTGKQGDRGEAGA----------QGPMGPSGPAGARGIQGPQGPR 1046
Query: 117 SRHRWEPPPPGAATATGSRHRREPPSPGATTAGSCHLRSSGSTGTRRAPSHPA-----AL 171
+ E PG G R G TG + P P
Sbjct: 1047 G-DKGEAGEPGERGLKGHR---------------------GFTGLQGLPGPPGPSGDQGA 1084
Query: 172 QVPYTREGPREPTPPAGPQGFAGSFCAEGSRRGAEVGWGKLEPQGTR-RTGSLGVDSSP 229
P GPR P P GP G + GA G + P G R R+G G P
Sbjct: 1085 SGPAGPSGPRGPPGPVGPSG----------KDGANGIPGPIGPPGPRGRSGETGPAGPP 1133
>gi|119829187 alpha 1 type XVII collagen [Homo sapiens]
Length = 1497
Score = 47.8 bits (112), Expect = 1e-05
Identities = 49/166 (29%), Positives = 59/166 (35%), Gaps = 36/166 (21%)
Query: 58 PGHTAPRTQQ----PKPSGPSSHPRE-----PPLPGAVTGGSLHFQEPPPLGAATAGSRH 108
PG PR P P GP P E P PG+ S F PP G +
Sbjct: 859 PGPPGPRGPPGPSIPGPPGPRGPPGEGLPGPPGPPGSFLSNSETFLSGPPGPPGPPGPKG 918
Query: 109 RQKPPSPGSRHRWEPPPPGAATATGSR---HRREPPSPGATTAGSCHLRSSGSTGTRRAP 165
Q PP P H+ E PG +T+ S + + PP P G G + P
Sbjct: 919 DQGPPGPRG-HQGEQGLPGFSTSGSSSFGLNLQGPPGPPG---------PQGPKGDKGDP 968
Query: 166 SHPAALQVPYTREGPRE-----------PTPPAGPQGFAGSFCAEG 200
P AL +P GP E P P GP G GS + G
Sbjct: 969 GVPGALGIP---SGPSEGGSSSTMYVSGPPGPPGPPGPPGSISSSG 1011
Score = 35.4 bits (80), Expect = 0.072
Identities = 62/239 (25%), Positives = 80/239 (33%), Gaps = 40/239 (16%)
Query: 68 PKPSGPSSHPREPPLPGAVTGGSLHFQEPP--------PLGAATAGSRHRQKPPSPGSRH 119
P P G P P +PG + G Q P P G R R+ P P
Sbjct: 578 PGPKGDRGFPGTPGIPGPL--GHPGPQGPKGQKGSVGDPGMEGPMGQRGREGPMGP---- 631
Query: 120 RWEPPPPGAATATGSRHRREPPSPGATTAGSCHLRSSGSTGTRRAPSHPAALQVPYTREG 179
R E PPG+ G R P P + GS+G+ G
Sbjct: 632 RGEAGPPGSGEK-GERGAAGEPGPHGPPGVPGSVGPKGSSGS----------------PG 674
Query: 180 PREPTPPAGPQGFAGSFCAEGSRRGAEVGWGKLEPQGTR-RTGSLGVDSSPLSETLGPAQ 238
P+ P P G QG G G +G + G P+G + G G+ P L A
Sbjct: 675 PQGPPGPVGLQGLRGEVGLPGV-KGDKGPMGPPGPKGDQGEKGPRGLTGEPGMRGLPGAV 733
Query: 239 CGSGRRRACSVL----HHHCDGIRFRDCHCAPSACPGPTQDP-QAGLC--TGQEGYPGT 290
G + A H G + PGP+ DP + GL G +G PGT
Sbjct: 734 GEPGAKGAMGPAGPDGHQGPRGEQGLTGMPGIRGPPGPSGDPGKPGLTGPQGPQGLPGT 792
>gi|41349486 proline-rich protein BstNI subfamily 1 isoform 3
preproprotein [Homo sapiens]
Length = 178
Score = 47.8 bits (112), Expect = 1e-05
Identities = 43/137 (31%), Positives = 52/137 (37%), Gaps = 24/137 (17%)
Query: 58 PGHTAPRTQQPKPSGPSSHPREPPLPGAVTG----GSLHFQEPPPLGAATAGSRHRQKPP 113
P A Q P P G + PP PG G G Q PPP G Q PP
Sbjct: 29 PSLIAGNPQGPSPQGGNKPQGPPPPPGKPQGPPPQGGNKPQGPPPPGKP-------QGPP 81
Query: 114 SPGSRHRWEPPPPGAATATGSRHRREPPSPGATTAGSCHLRSSGSTGTRRAPSHPAALQV 173
G + R PPG + PP G G + G + ++ A S P Q
Sbjct: 82 PQGDKSRSPRSPPGKP--------QGPPPQGGKPQGP---PAQGGSKSQSARSPPGKPQG 130
Query: 174 PYTREG--PREPTPPAG 188
P +EG P+ P PPAG
Sbjct: 131 PPQQEGNNPQGPPPPAG 147
Score = 36.6 bits (83), Expect = 0.032
Identities = 35/143 (24%), Positives = 49/143 (34%), Gaps = 19/143 (13%)
Query: 54 GKRRPGHTAP--RTQQPKPSGPSSHPREPPLPGAVTGG------SLHFQEPP--PLGAAT 103
G + G P + Q P P G + P+ PP PG G S + PP P G
Sbjct: 44 GNKPQGPPPPPGKPQGPPPQG-GNKPQGPPPPGKPQGPPPQGDKSRSPRSPPGKPQGPPP 102
Query: 104 AGSRHRQKPPSPGSRHRWEPPPPGAATATGSRHRREPPSPGATTAGSCHLRSSGSTGTRR 163
G + + P GS+ + PPG + P P G+ + G +
Sbjct: 103 QGGKPQGPPAQGGSKSQSARSPPGKPQGPPQQEGNNPQGPPPPAGGNPQQPQAPPAGQPQ 162
Query: 164 APSHPAALQVPYTREGPREPTPP 186
P P +G R PP
Sbjct: 163 GPPRPP--------QGGRPSRPP 177
>gi|51702526 Wiskott-Aldrich syndrome gene-like protein [Homo
sapiens]
Length = 505
Score = 47.4 bits (111), Expect = 2e-05
Identities = 47/149 (31%), Positives = 55/149 (36%), Gaps = 25/149 (16%)
Query: 42 ETGWFRGLCRSTGKRRPGHTAPRTQQPKPSGPSSHPREPPLPGAVTGGSLHFQEPPPLGA 101
+TG + ++ P P P P P H PP P A G+ PPP A
Sbjct: 261 KTGGVEAVKNELRRQAPPPPPPSRGGPPPPPPPPHNSGPPPPPARGRGA---PPPPPSRA 317
Query: 102 ATAGSRHRQKPPSPGSRHRWEPPPPGAATATGSRHRREPPSPGATTAGSCHLRSSGSTGT 161
TA PP P SR PPP +R PP P A L SS +G
Sbjct: 318 PTAA-----PPPPPPSRPSVAVPPP-------PPNRMYPPPPPA-------LPSSAPSGP 358
Query: 162 RRAPSHPAALQV-PYTREGPREPTPPAGP 189
P P+ L V P P P PP GP
Sbjct: 359 --PPPPPSVLGVGPVAPPPPPPPPPPPGP 385
Score = 31.6 bits (70), Expect = 1.0
Identities = 25/89 (28%), Positives = 30/89 (33%), Gaps = 20/89 (22%)
Query: 63 PRTQQPKPSGPSSHPRE--PPLPGAVTGGSLHFQEPPPLGAATAGSRHRQKPPSPGSRHR 120
P +P + P P PP P A+ + PPP G PP P
Sbjct: 325 PPPSRPSVAVPPPPPNRMYPPPPPALPSSAPSGPPPPPPSVLGVGPVAPPPPPPP----- 379
Query: 121 WEPPPPGAATATGSRHRREPPSPGATTAG 149
PPPPG PP PG + G
Sbjct: 380 --PPPPG-----------PPPPPGLPSDG 395
>gi|41349484 proline-rich protein BstNI subfamily 1 isoform 2
preproprotein [Homo sapiens]
Length = 198
Score = 47.4 bits (111), Expect = 2e-05
Identities = 44/144 (30%), Positives = 55/144 (38%), Gaps = 18/144 (12%)
Query: 58 PGHTAPRTQQPKPSGPSSHPREPPLPGAVTG----GSLHFQEPP----PLGAATAGSRHR 109
P A Q P P G + PP PG G G Q PP P G G + R
Sbjct: 29 PSLIAGNPQGPSPQGGNKPQGPPPPPGKPQGPPPQGGNKPQGPPPPGKPQGPPPQGDKSR 88
Query: 110 QKPPSPGSRHRWEPP---PPGAATATGSRHRREPPSPGATTAGSCHLRSSGSTGTRRAPS 166
P SP + + PP P G + PP PG + G + ++ A S
Sbjct: 89 -SPRSPPGKPQGPPPQGGKPQGPPPQGGNKPQGPPPPGKPQGPP----AQGGSKSQSARS 143
Query: 167 HPAALQVPYTREG--PREPTPPAG 188
P Q P +EG P+ P PPAG
Sbjct: 144 PPGKPQGPPQQEGNNPQGPPPPAG 167
Score = 34.7 bits (78), Expect = 0.12
Identities = 32/126 (25%), Positives = 43/126 (34%), Gaps = 18/126 (14%)
Query: 62 APRTQQPKPSGPSSHPREPPLPGAVTGGSLHFQEPPPLGAATAGSRHRQKPPSPG-SRHR 120
+PR+ KP GP +P P G Q PPP G Q PP+ G S+ +
Sbjct: 89 SPRSPPGKPQGPPPQGGKPQGPPPQGGNKP--QGPPPPGKP-------QGPPAQGGSKSQ 139
Query: 121 WEPPPPGAATATGSRHRREPPSPGATTAGSCHLRSSGSTGTRRAPSHPAALQVPYTREGP 180
PPG + P P G+ + G + P P +G
Sbjct: 140 SARSPPGKPQGPPQQEGNNPQGPPPPAGGNPQQPQAPPAGQPQGPPRPP--------QGG 191
Query: 181 REPTPP 186
R PP
Sbjct: 192 RPSRPP 197
Score = 30.8 bits (68), Expect = 1.8
Identities = 28/96 (29%), Positives = 35/96 (36%), Gaps = 4/96 (4%)
Query: 98 PLGAATAGSRHRQKPPSPGSRHRWEPPPPGAATATGSRHRREPPSPGATTAGSCHLRSSG 157
P G + G Q PP P + + PPP G G +P P S RS
Sbjct: 36 PQGPSPQGGNKPQGPPPPPGKPQ-GPPPQGGNKPQGPPPPGKPQGPPPQGDKSRSPRSPP 94
Query: 158 STGTRRAPSHPAALQVPYTREG--PREPTPPAGPQG 191
+ P Q P + G P+ P PP PQG
Sbjct: 95 GK-PQGPPPQGGKPQGPPPQGGNKPQGPPPPGKPQG 129
>gi|32140760 collagen, type XXVII, alpha 1 [Homo sapiens]
Length = 1860
Score = 46.6 bits (109), Expect = 3e-05
Identities = 46/159 (28%), Positives = 63/159 (39%), Gaps = 31/159 (19%)
Query: 55 KRRPGHTAPRTQQPKPSGPSSHPREPPLPG-AVTGGSLHFQEPPPLGAATAGSRHRQKP- 112
+R PG P +P P++ + P+P A T + P A T S H+ P
Sbjct: 427 QRNPGMPRPPPPSTRPLPPTTSSSKKPIPTLARTEAKITSHASKPASART--STHKPPPF 484
Query: 113 --------PSPGSRHRWEPP----PPGAATATGSRHRREPPSPGATTAGS---CHLRSSG 157
P+PGS PP PP + T+T R P+PG+ GS +S
Sbjct: 485 TALSSSPAPTPGSTRSTRPPATMVPPTSGTST-PRTAPAVPTPGSAPTGSKKPIGSEASK 543
Query: 158 STGTRRAPSHP-------AALQVPY----TREGPREPTP 185
G + +P P AA VP TR PR+P P
Sbjct: 544 KAGPKSSPRKPVPLRPGKAARDVPLSDLTTRPSPRQPQP 582
Score = 39.3 bits (90), Expect = 0.005
Identities = 44/137 (32%), Positives = 50/137 (36%), Gaps = 22/137 (16%)
Query: 68 PKPSGPSSHPREPPLPGAVTGGSLHFQEPPPLGAATAGSRHRQKPPSPGSRHRWEPP-PP 126
P P G HP P GG EP P G + R P G++ R P P
Sbjct: 1023 PGPKGSMGHPGMP-------GGMGTPGEPGPQGPPGS----RGPPGMRGAKGRRGPRGPD 1071
Query: 127 GAATATGSRHRREPPSPGAT--------TAGSC-HLRSSGSTGTRRAPSHPAALQVPYTR 177
G A GSR + PP P AG HL S G G PS P +
Sbjct: 1072 GPAGEQGSRGLKGPPGPQGRPGRPGQQGVAGERGHLGSRGFPGIP-GPSGPPGTKGLPGE 1130
Query: 178 EGPREPTPPAGPQGFAG 194
GP+ P P GP G G
Sbjct: 1131 PGPQGPQGPIGPPGEMG 1147
Score = 38.9 bits (89), Expect = 0.006
Identities = 43/180 (23%), Positives = 65/180 (36%), Gaps = 39/180 (21%)
Query: 63 PRTQQPKPSGPSS--------HPREPPLPGAVTGGSLHFQEPPPLGAATAGSRHRQKPPS 114
P++ KPS PS+ HP + P + T +L Q+ P + +R +
Sbjct: 365 PKSLPTKPSAPSTSIVPIKSPHPTQKTAPSSFTKSALPTQKQVPPTSRPVPARVSRPAEK 424
Query: 115 PGSRHRWEPPPPGAATA----TGSRHRREPPSPGATTA---GSCHLRSSGSTGTRRAP-- 165
P R+ P PP +T T S ++ P+ T A +S T T + P
Sbjct: 425 PIQRNPGMPRPPPPSTRPLPPTTSSSKKPIPTLARTEAKITSHASKPASARTSTHKPPPF 484
Query: 166 ----------------SHPAALQVPYT------REGPREPTPPAGPQGFAGSFCAEGSRR 203
+ P A VP T R P PTP + P G +E S++
Sbjct: 485 TALSSSPAPTPGSTRSTRPPATMVPPTSGTSTPRTAPAVPTPGSAPTGSKKPIGSEASKK 544
Score = 38.5 bits (88), Expect = 0.008
Identities = 64/252 (25%), Positives = 84/252 (33%), Gaps = 52/252 (20%)
Query: 53 TGKRRPGHTAPRTQQPKPSGPSSHPREP-PL-PGAVTGGSLHFQEPPPLGAATAGSRHRQ 110
TG ++P ++ K +GP S PR+P PL PG PL T RQ
Sbjct: 531 TGSKKP----IGSEASKKAGPKSSPRKPVPLRPGKAA-------RDVPLSDLTTRPSPRQ 579
Query: 111 KPPSPGSRHRWEPPPPGAATATGSRHRREPPSPGATTAGSCHLRSS-------------G 157
PS + P A ++ P P ++ HL S G
Sbjct: 580 PQPS-------QQTTPALVLAP-AQFLSSSPRPTSSGYSIFHLAGSTPFPLLMGPPGPKG 631
Query: 158 STGTRRAPSHPAALQVPYTREGPREPTPPAGPQGFAGSFCAEGSRRGAEVGWGKLEPQGT 217
G P P +P R GPR P P G G G A+G + + GK
Sbjct: 632 DCGLPGPPGLPGLPGIPGAR-GPRGPPGPYGNPGLPGPPGAKGQKGDPGLSPGKAHDGAK 690
Query: 218 RRTGSLGVDSSPLSETLGPAQCGSGRRRACSVLHHHCDGIRFRDCHCAPSACPGPTQDPQ 277
G G+ +P GP GR+ G H PGP P
Sbjct: 691 GDMGLPGLSGNP-----GP----PGRKGH--------KGYPGPAGHPGEQGQPGPEGSPG 733
Query: 278 AGLCTGQEGYPG 289
A G++G PG
Sbjct: 734 AKGYPGRQGLPG 745
Score = 32.0 bits (71), Expect = 0.79
Identities = 23/77 (29%), Positives = 25/77 (32%), Gaps = 8/77 (10%)
Query: 126 PGAATATGSRHRREPPSPGATTAGSCHLRSSGSTGTRRAPSH--------PAALQVPYTR 177
PG G R PP H G GT P P ++ R
Sbjct: 1005 PGIVGEKGDRGMMGPPGVPGPKGSMGHPGMPGGMGTPGEPGPQGPPGSRGPPGMRGAKGR 1064
Query: 178 EGPREPTPPAGPQGFAG 194
GPR P PAG QG G
Sbjct: 1065 RGPRGPDGPAGEQGSRG 1081
Score = 30.4 bits (67), Expect = 2.3
Identities = 47/182 (25%), Positives = 58/182 (31%), Gaps = 23/182 (12%)
Query: 58 PGHTAPRTQQPKPSGPSSHPREPPLPGAVTGGSLHFQEPP-----PLGAATAGSRHRQ-K 111
PG + Q P P + + PL GS+ F PP P G +
Sbjct: 867 PGFQGDKGSQGLPGFPGARGKPGPLGKVGDKGSIGFPGPPGPEGFPGDIGPPGDNGPEGM 926
Query: 112 PPSPGSRHRWEPPPPGAATATGSRHRREPP-SPGATTAGSCHLRSSGSTGTRRAPSHPAA 170
PG+R P P G G PP +PG G G + P P
Sbjct: 927 KGKPGARGL--PGPRGQLGPEGDEGPMGPPGAPGL----------EGQPGRKGFPGRPGL 974
Query: 171 LQVPYTREGPREPTPPAGPQGFAG--SFCAEGSRRGAEVGWGKLEPQGT-RRTGSLGVDS 227
V P P P G QGF G E G + G + P G GS+G
Sbjct: 975 DGVKGEPGDPGRP-GPVGEQGFMGFIGLVGEPGIVGEKGDRGMMGPPGVPGPKGSMGHPG 1033
Query: 228 SP 229
P
Sbjct: 1034 MP 1035
>gi|4826998 splicing factor proline/glutamine rich (polypyrimidine
tract binding protein associated) [Homo sapiens]
Length = 707
Score = 46.6 bits (109), Expect = 3e-05
Identities = 43/151 (28%), Positives = 63/151 (41%), Gaps = 24/151 (15%)
Query: 55 KRRPGHTAPRTQQPKPSGPSSHP-----REPPLPGAVTGGSLHFQEPPPL-GAATAGSRH 108
+++P P QQP P P HP ++PP P + + Q P P G +A
Sbjct: 69 QQQPPPQQPPPQQPPPHQPPPHPQPHQQQQPPPPPQDSSKPVVAQGPGPAPGVGSAPPAS 128
Query: 109 RQKPPS--------PGSRHRWEPPPPGAATATGSRHRREPPSPGATTAGSCHLRSSGSTG 160
PP+ PGS P PP A T+ + PP+P ++ + ++ G
Sbjct: 129 SSAPPATPPTSGAPPGSGPGPTPTPPPAVTS--APPGAPPPTPPSSGVPTTPPQAGG--- 183
Query: 161 TRRAPSHPAALQVPYTREGPREPTPPAGPQG 191
P PAA VP GP++ P GP+G
Sbjct: 184 ---PPPPPAA--VPGPGPGPKQGPGPGGPKG 209
Score = 43.9 bits (102), Expect = 2e-04
Identities = 54/211 (25%), Positives = 65/211 (30%), Gaps = 27/211 (12%)
Query: 58 PGHTAPRTQQPKPSGPSSHPREPPLPGAVTGGSLHFQEPPPLGAATAGSRHRQKPPSPGS 117
PG + + P GP +PP+P Q+PPP Q PP P
Sbjct: 36 PGMGLNQNRGPMGPGPGQSGPKPPIPPPPPHQQQ--QQPPPQQPPPQQPPPHQPPPHPQP 93
Query: 118 RHRWEPPP-------------PGAATATGSRHRREPPSPGATTAGSCHLRSSGSTGTRRA 164
+ +PPP PG A GS +P AT S SG T
Sbjct: 94 HQQQQPPPPPQDSSKPVVAQGPGPAPGVGSAPPASSSAPPATPPTSGAPPGSGPGPTPTP 153
Query: 165 PSHPAALQVPYTREGPREP------TPPAGPQGFAGSFCAEGSRRGAEVGWGKLEPQGTR 218
P PA P P P TPP G G + G G P+G +
Sbjct: 154 P--PAVTSAPPGAPPPTPPSSGVPTTPPQAGGPPPPPAAVPGPGPGPKQGPGPGGPKGGK 211
Query: 219 RTGSLGVDSSPLSETLG----PAQCGSGRRR 245
G P T G P G G R
Sbjct: 212 MPGGPKPGGGPGLSTPGGHPKPPHRGGGEPR 242
Score = 28.9 bits (63), Expect = 6.7
Identities = 41/189 (21%), Positives = 58/189 (30%), Gaps = 27/189 (14%)
Query: 61 TAPRTQQPKPS-----GPSSHPREPPLPGAVTGGSLHFQEPPPLGAATAGSRHRQKPPSP 115
T P+ P P GP P++ P PG GG + P G + KPP
Sbjct: 177 TPPQAGGPPPPPAAVPGPGPGPKQGPGPGGPKGGKMPGGPKPGGGPGLSTPGGHPKPPHR 236
Query: 116 GS--------------RHRWEPPPPGAATATGSRHRREPPSPGATTAGSCHLRSSGSTGT 161
G + + PPPG G + S G S R T T
Sbjct: 237 GGGEPRGGRQHHPPYHQQHHQGPPPGG--PGGRSEEKISDSEGFKANLSLLRRPGEKTYT 294
Query: 162 RRAPSHPAALQVPYTREGPREPTPPAGPQGFAGSFCAEGSRRGAEVGWGKLEPQGTRRTG 221
+R L T + + G G +G G+ KLE +
Sbjct: 295 QRCRLFVGNLPADITEDEFKRLFAKYGEPG------EVFINKGKGFGFIKLESRALAEIA 348
Query: 222 SLGVDSSPL 230
+D +P+
Sbjct: 349 KAELDDTPM 357
>gi|163965366 nascent polypeptide-associated complex alpha subunit
isoform a [Homo sapiens]
Length = 2078
Score = 46.6 bits (109), Expect = 3e-05
Identities = 49/169 (28%), Positives = 59/169 (34%), Gaps = 22/169 (13%)
Query: 62 APRTQQPKPSGPSSHPREPPLPGAVTGGSLHFQEPPPLGAATAGSRHR-------QKPPS 114
AP T P P P PP GA T + PP L A H+ PPS
Sbjct: 1240 APTTPAATPPSPKGGPATPPPKGAPTPPA---ATPPSLKGGLATPPHKGAPNPAVVTPPS 1296
Query: 115 PGSRHRWEPP-----PPGAATATGSRHRREPPSPGATTAGSCHLRSSGSTGTRRA--PSH 167
P PP PP A + PP GA T + S T T A PS
Sbjct: 1297 PKGGPATSPPKGAPTPPAATPPSPKGSPGTPPPKGAPTPPAVTPPSPKGTPTLPATTPSS 1356
Query: 168 PAALQVPYTREGPREPTPPAGPQGFAG--SFCAEGSRRGAEVGWGKLEP 214
P ++EG PTPPA G + +RG + K +P
Sbjct: 1357 KGGPTTPSSKEG---PTPPAATPSHKGGPAMTPPSPKRGPAIPSPKGDP 1402
Score = 42.4 bits (98), Expect = 6e-04
Identities = 48/151 (31%), Positives = 58/151 (38%), Gaps = 33/151 (21%)
Query: 61 TAPRTQQPKPSG--PSSHPREPPLPGAVT-----GGSLHFQEPPPLGAATAGSRHRQKPP 113
T P P P G + P+ P P A T GG P P GA T + PP
Sbjct: 964 TPPAATPPSPKGGPATPSPKGAPTPPAATPPSPKGGPA---TPSPKGAPTPPA---VTPP 1017
Query: 114 SPGSRHRWEPPPPGAATATGSRHRREPPSP-----------GATTAGSCHLRS-SGSTGT 161
SP P P GA+T + PPSP GA T + L S G T
Sbjct: 1018 SPKGSPAATPFPKGASTPPAA----TPPSPKGSPAATPLPKGAPTTPAATLPSPKGGPAT 1073
Query: 162 ---RRAPSHPAALQVPYTREGPREPTPPAGP 189
+ AP+ PAA P + GP P+P P
Sbjct: 1074 PSLKGAPTPPAATP-PSPKGGPATPSPKGAP 1103
Score = 40.8 bits (94), Expect = 0.002
Identities = 40/138 (28%), Positives = 49/138 (35%), Gaps = 28/138 (20%)
Query: 55 KRRPGHTAPRTQQPKPSGPSSHP---REPPLPGAVTGGSLHFQEPPPLGAATAGSRHRQK 111
K P AP+ Q P S SS P R P P + P P A +
Sbjct: 897 KEGPATPAPK-QAPALSMTSSSPKKARATPAPKGIPASPSPKGAPTPPAATPPSPKGGPA 955
Query: 112 PPSPGSRHRWEPPPPGAATATGSRHRREPPSPGATTAGSCHLRSSGSTGTRRAPSHPAAL 171
PSP +W P PP A PPSP A + + AP+ PAA
Sbjct: 956 TPSP----KWAPTPPAAT----------PPSPKGGPA---------TPSPKGAPTPPAAT 992
Query: 172 QVPYTREGPREPTPPAGP 189
P + GP P+P P
Sbjct: 993 P-PSPKGGPATPSPKGAP 1009
Score = 37.7 bits (86), Expect = 0.014
Identities = 49/160 (30%), Positives = 55/160 (34%), Gaps = 42/160 (26%)
Query: 58 PGHTAPRTQQPKPSGPSSHPREPPLPGAVT----------GGSLHFQEPPPLGAATAGSR 107
P AP T P P PP GA T GG PPP GA T +
Sbjct: 1121 PHKGAPTTPAATPPSPKGGLATPPPKGAPTTPAATPPSPKGG---LATPPPKGAPTTPAA 1177
Query: 108 HRQKPPSPGSRHRWEPPPPGAATATGSRHRREPPSP-----------GATTAGSCHLRSS 156
PPSP P P GA T + PPSP TT +
Sbjct: 1178 ---TPPSPKGGLA-TPSPKGAPTTPAAT----PPSPKGGLATPSPKGAPTTPAATPPSPK 1229
Query: 157 GSTGT---RRAPSHPAALQVPYTREGPR------EPTPPA 187
G T + AP+ PAA P + GP PTPPA
Sbjct: 1230 GGLATPSPKGAPTTPAATP-PSPKGGPATPPPKGAPTPPA 1268
Score = 37.4 bits (85), Expect = 0.019
Identities = 42/145 (28%), Positives = 56/145 (38%), Gaps = 36/145 (24%)
Query: 62 APRTQQPK--PSGPSSH------------PREPPLPGAVTGGSLHFQ---EPPPLGAATA 104
AP T PK P+ PSS P+EPP P V S + P P+GA T
Sbjct: 1446 APATSAPKGGPATPSSKGDPTLPAVTPPSPKEPPAPKQVATSSSPKKAPATPAPMGAPTL 1505
Query: 105 GSRHRQKPPSPGSRHRWEPPPPGAATATGSRHRREPPSPGATTAGSCHLRSSGSTGTRRA 164
+ P P AT S RR+P +P AT + + +T +
Sbjct: 1506 PA--------------VIPSSPKEVPATPS-SRRDPIAPTATLLS----KKTPATLAPKE 1546
Query: 165 PSHPAALQVPYTREGPREPTPPAGP 189
P A+ VP ++ P PTP P
Sbjct: 1547 ALIPPAMTVPSPKKTPAIPTPKEAP 1571
Score = 37.0 bits (84), Expect = 0.025
Identities = 37/142 (26%), Positives = 49/142 (34%), Gaps = 30/142 (21%)
Query: 48 GLCRSTGKRRPGHTAPRTQQPKPSGPSSHPREPPLPGAVTGGSLHFQEPPPLGAATAGSR 107
G+ S +RP P G S P P + SL FQ GS+
Sbjct: 798 GVSVSPQTKRPPTKKGSAGPDTPIGNLSSPVSPVEASFLPENSLSFQ----------GSK 847
Query: 108 HRQKPPSPGSRHRWEPPPPGAATATGSRHRREPPSPGATTAGSCHLRSSGSTGTRRAPSH 167
SP + H PP P A P+P A T L G T +
Sbjct: 848 D-----SPATTHSPTPPSPKGA-----------PTPSAVTP----LSPKGVTLPPKETPT 887
Query: 168 PAALQVPYTREGPREPTPPAGP 189
P+ + +P+ +EGP P P P
Sbjct: 888 PSVVNLPFPKEGPATPAPKQAP 909
Score = 33.1 bits (74), Expect = 0.36
Identities = 37/146 (25%), Positives = 55/146 (37%), Gaps = 20/146 (13%)
Query: 55 KRRPGHTAPRTQQPKPSG-PSSHPREPPLP----GAVTGGSLHFQEPP----PLGAATAG 105
KR P +P+ P+ P S + P P GA T P L A A
Sbjct: 1390 KRGPAIPSPKGDPTSPAVIPLSPKKAPATPVTREGAATPSKGDLTPPAVTPVSLKKAPAT 1449
Query: 106 SRHRQKPPSPGSRHRWEPPPPGAATATGSRHRREPPSPGATTAGSCHLRSSGSTGTRRAP 165
S + P +P S+ +P P + +EPP+P S ++ + AP
Sbjct: 1450 SAPKGGPATPSSKG--DPTLPAVTPPSP----KEPPAPKQVATSSSPKKAPATPAPMGAP 1503
Query: 166 SHPAAL-----QVPYTREGPREPTPP 186
+ PA + +VP T R+P P
Sbjct: 1504 TLPAVIPSSPKEVPATPSSRRDPIAP 1529
Score = 33.1 bits (74), Expect = 0.36
Identities = 41/161 (25%), Positives = 57/161 (35%), Gaps = 34/161 (21%)
Query: 52 STGKRRPGHTAPRTQQPKPSGPSSHPREPPL-------PGAVTGGSLHFQEPPPLG---- 100
S+ K+ P AP P+ S P+E P P A T L + P L
Sbjct: 1488 SSPKKAPATPAPMGAPTLPAVIPSSPKEVPATPSSRRDPIAPTATLLSKKTPATLAPKEA 1547
Query: 101 ----AATAGSRHR--------QKPPSPGSRHRWEPPPPGAATATGSRHRREPPSPGATTA 148
A T S + + P +P S+ PP +T G+ +E P A T
Sbjct: 1548 LIPPAMTVPSPKKTPAIPTPKEAPATPSSKEASSPPAVTPSTYKGAPSPKELLIPPAVT- 1606
Query: 149 GSCHLRSSGSTGTRRAPSHPAALQVPYTREGPREPTPPAGP 189
S + AP+ P A+ P +GP P P P
Sbjct: 1607 ---------SPSPKEAPT-PPAVTPPSPEKGPATPAPKGTP 1637
>gi|11386161 alpha 2 type IX collagen [Homo sapiens]
Length = 689
Score = 46.2 bits (108), Expect = 4e-05
Identities = 51/175 (29%), Positives = 64/175 (36%), Gaps = 24/175 (13%)
Query: 70 PSGPSSHPREPPLPGAVTG--GSLHF----------QEPPPLGAATAGSRHRQKPPSPGS 117
PSGP P +P PG + G GS F + PP L + R PG
Sbjct: 147 PSGPPGPPGKPGRPGTIQGLEGSADFLCPTNCPPGMKGPPGLQGVKGHAGKRGILGDPG- 205
Query: 118 RHRWEPPPPGAATATGSRHRREPPSPGATTAGSCHLRSSGSTGTRRAPSHPAALQV--PY 175
H+ +P P G A+G + PP P G TG A+ P
Sbjct: 206 -HQGKPGPKGDVGASGEQGIPGPPGPQGIRGYPGMAGPKGETGPHGYKGMVGAIGATGPP 264
Query: 176 TREGPREPTPPAGPQGFAGSFCAEGSRRGAEVGWGKLEPQG-TRRTGSLGVDSSP 229
EGPR P AG +G GS G + G P+G T G G D +P
Sbjct: 265 GEEGPRGPPGRAGEKGDEGSPGIRGPQ-------GITGPKGATGPPGINGKDGTP 312
Score = 30.0 bits (66), Expect = 3.0
Identities = 41/149 (27%), Positives = 50/149 (33%), Gaps = 20/149 (13%)
Query: 58 PGHTAPRTQQPKPSGPSSHPREPPLPGAVTGGSLHFQEPPPLGAATAGSRHRQKPPSPGS 117
PG P P GP HP +PG + G P G R + PG
Sbjct: 558 PGPPGP-PGYPGKQGPHGHPGPRGVPG-IVGAVGQIGNTGPKG-------KRGEKGDPGE 608
Query: 118 RHRWEPPPPGAATATGSRHRREPPSPGATTAGSCHLRSS-GSTGTRRAPSHPAALQVPYT 176
R P PG G P PG G R S G+ G P P + +P
Sbjct: 609 VGRGHPGMPGPPGIPGL-----PGRPGQAINGKDGDRGSPGAPGEAGRPGLPGPVGLP-- 661
Query: 177 REGPREPTPPAGPQGFAGSFCAE-GSRRG 204
G EP G +A + E GS +G
Sbjct: 662 --GFCEPAACLGASAYASARLTEPGSIKG 688
>gi|112382226 atrophin-1 like protein isoform b [Homo sapiens]
Length = 1012
Score = 46.2 bits (108), Expect = 4e-05
Identities = 58/223 (26%), Positives = 77/223 (34%), Gaps = 46/223 (20%)
Query: 58 PGHTAPRTQQPKPSGPSS-----HPREPPLPGAVTGGSLHFQEPP--PLGAATAGSRHRQ 110
P P T P+ S+ PRE PLP A H + PP P+ A H+
Sbjct: 335 PAAAYPHTSLQLPASQSALQSQQPPREQPLPPAPLAMP-HIKPPPTTPIPQLPAPQAHKH 393
Query: 111 KP----PSPGSRHRWEPPPPGAATATGSRHRREPPS---------PGATTAGSCHLRSSG 157
P PSP S + PPPP A S PPS P + S + G
Sbjct: 394 PPHLSGPSPFSMNANLPPPP-ALKPLSSLSTHHPPSAHPPPLQLMPQSQPLPSSPAQPPG 452
Query: 158 STGTRRAPSHPAA---------------LQVPYTREGP---------REPTPPAGPQGFA 193
T ++ P PA+ Q P+ GP TPPAGP A
Sbjct: 453 LTQSQNLPPPPASHPPTGLHQVAPQPPFAQHPFVPGGPPPITPPTCPSTSTPPAGPGTSA 512
Query: 194 GSFCAEGSRRGAEVGWGKLEPQGTRRTGSLGVDSSPLSETLGP 236
C+ + G + G P T + +D + E+ P
Sbjct: 513 QPPCSGAAASGGSIAGGSSCPLPTVQIKEEALDDAEEPESPPP 555
Score = 42.7 bits (99), Expect = 4e-04
Identities = 42/133 (31%), Positives = 53/133 (39%), Gaps = 11/133 (8%)
Query: 58 PGHTAPRTQQPKPSGPSSHPREPPLPGAVTGGSLHFQEPPPLGAATAGSRHRQKPPSPGS 117
P AP P PS S+ P P LP G + PP G+ TA Q P +P +
Sbjct: 185 PALQAPTGVTPAPS--SAPPGTPQLP--TPGPTPSATAVPPQGSPTASQAPNQ-PQAPTA 239
Query: 118 RHRWEPPPPGAATATGSRHRREPPSPGATTAGSCHLRSSGSTGTRRAPSHPAALQVPYTR 177
P P + H + PPSP S H TG+ PS P+ Q P
Sbjct: 240 -----PVPHTHIQQAPALHPQRPPSPHPPPHPSPHPPLQPLTGSAGQPSAPSHAQPPLHG 294
Query: 178 EGPREP-TPPAGP 189
+GP P + AGP
Sbjct: 295 QGPPGPHSLQAGP 307
Score = 33.1 bits (74), Expect = 0.36
Identities = 44/175 (25%), Positives = 62/175 (35%), Gaps = 47/175 (26%)
Query: 61 TAPRTQQPKPSGPSSHPREPPLPGAVTGGSL--------HFQEPP-------PLGAATAG 105
+A + P + P H + PP P ++ G L F PP PLG + A
Sbjct: 278 SAGQPSAPSHAQPPLHGQGPPGPHSLQAGPLLQHPGPPQPFGLPPQASQGQAPLGTSPAA 337
Query: 106 S---------------------RHRQKPPSPGSRHRWEPPP--PGAATATGSRHRREP-- 140
+ R + PP+P + +PPP P H+ P
Sbjct: 338 AYPHTSLQLPASQSALQSQQPPREQPLPPAPLAMPHIKPPPTTPIPQLPAPQAHKHPPHL 397
Query: 141 --PSPGATTAG---SCHLRSSGSTGTRRAPS-HPAALQ-VPYTREGPREPTPPAG 188
PSP + A L+ S T PS HP LQ +P ++ P P P G
Sbjct: 398 SGPSPFSMNANLPPPPALKPLSSLSTHHPPSAHPPPLQLMPQSQPLPSSPAQPPG 452
>gi|112382224 atrophin-1 like protein isoform a [Homo sapiens]
Length = 1566
Score = 46.2 bits (108), Expect = 4e-05
Identities = 58/223 (26%), Positives = 77/223 (34%), Gaps = 46/223 (20%)
Query: 58 PGHTAPRTQQPKPSGPSS-----HPREPPLPGAVTGGSLHFQEPP--PLGAATAGSRHRQ 110
P P T P+ S+ PRE PLP A H + PP P+ A H+
Sbjct: 889 PAAAYPHTSLQLPASQSALQSQQPPREQPLPPAPLAMP-HIKPPPTTPIPQLPAPQAHKH 947
Query: 111 KP----PSPGSRHRWEPPPPGAATATGSRHRREPPS---------PGATTAGSCHLRSSG 157
P PSP S + PPPP A S PPS P + S + G
Sbjct: 948 PPHLSGPSPFSMNANLPPPP-ALKPLSSLSTHHPPSAHPPPLQLMPQSQPLPSSPAQPPG 1006
Query: 158 STGTRRAPSHPAA---------------LQVPYTREGP---------REPTPPAGPQGFA 193
T ++ P PA+ Q P+ GP TPPAGP A
Sbjct: 1007 LTQSQNLPPPPASHPPTGLHQVAPQPPFAQHPFVPGGPPPITPPTCPSTSTPPAGPGTSA 1066
Query: 194 GSFCAEGSRRGAEVGWGKLEPQGTRRTGSLGVDSSPLSETLGP 236
C+ + G + G P T + +D + E+ P
Sbjct: 1067 QPPCSGAAASGGSIAGGSSCPLPTVQIKEEALDDAEEPESPPP 1109
Score = 42.7 bits (99), Expect = 4e-04
Identities = 42/133 (31%), Positives = 53/133 (39%), Gaps = 11/133 (8%)
Query: 58 PGHTAPRTQQPKPSGPSSHPREPPLPGAVTGGSLHFQEPPPLGAATAGSRHRQKPPSPGS 117
P AP P PS S+ P P LP G + PP G+ TA Q P +P +
Sbjct: 739 PALQAPTGVTPAPS--SAPPGTPQLP--TPGPTPSATAVPPQGSPTASQAPNQ-PQAPTA 793
Query: 118 RHRWEPPPPGAATATGSRHRREPPSPGATTAGSCHLRSSGSTGTRRAPSHPAALQVPYTR 177
P P + H + PPSP S H TG+ PS P+ Q P
Sbjct: 794 -----PVPHTHIQQAPALHPQRPPSPHPPPHPSPHPPLQPLTGSAGQPSAPSHAQPPLHG 848
Query: 178 EGPREP-TPPAGP 189
+GP P + AGP
Sbjct: 849 QGPPGPHSLQAGP 861
Score = 33.1 bits (74), Expect = 0.36
Identities = 44/175 (25%), Positives = 62/175 (35%), Gaps = 47/175 (26%)
Query: 61 TAPRTQQPKPSGPSSHPREPPLPGAVTGGSL--------HFQEPP-------PLGAATAG 105
+A + P + P H + PP P ++ G L F PP PLG + A
Sbjct: 832 SAGQPSAPSHAQPPLHGQGPPGPHSLQAGPLLQHPGPPQPFGLPPQASQGQAPLGTSPAA 891
Query: 106 S---------------------RHRQKPPSPGSRHRWEPPP--PGAATATGSRHRREP-- 140
+ R + PP+P + +PPP P H+ P
Sbjct: 892 AYPHTSLQLPASQSALQSQQPPREQPLPPAPLAMPHIKPPPTTPIPQLPAPQAHKHPPHL 951
Query: 141 --PSPGATTAG---SCHLRSSGSTGTRRAPS-HPAALQ-VPYTREGPREPTPPAG 188
PSP + A L+ S T PS HP LQ +P ++ P P P G
Sbjct: 952 SGPSPFSMNANLPPPPALKPLSSLSTHHPPSAHPPPLQLMPQSQPLPSSPAQPPG 1006
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.316 0.135 0.445
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,193,543
Number of Sequences: 37866
Number of extensions: 1394559
Number of successful extensions: 13602
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 151
Number of HSP's successfully gapped in prelim test: 1390
Number of HSP's that attempted gapping in prelim test: 8623
Number of HSP's gapped (non-prelim): 4480
length of query: 333
length of database: 18,247,518
effective HSP length: 103
effective length of query: 230
effective length of database: 14,347,320
effective search space: 3299883600
effective search space used: 3299883600
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.