Guide to the Human Genome
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Search of human proteins with 239754873

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|239754873 PREDICTED: similar to hCG2040393 [Homo sapiens]
         (333 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|239754873 PREDICTED: similar to hCG2040393 [Homo sapiens]          721   0.0  
gi|239749412 PREDICTED: hypothetical protein XP_002347031 [Homo ...   721   0.0  
gi|239743547 PREDICTED: hypothetical protein XP_002342883 [Homo ...   721   0.0  
gi|134254450 patched isoform S [Homo sapiens]                          92   6e-19
gi|134254435 patched isoform S [Homo sapiens]                          92   6e-19
gi|134254468 patched isoform S [Homo sapiens]                          92   6e-19
gi|134254452 patched isoform S [Homo sapiens]                          92   6e-19
gi|134254432 patched isoform L' [Homo sapiens]                         92   6e-19
gi|134254466 patched isoform M [Homo sapiens]                          92   6e-19
gi|134254446 patched isoform L [Homo sapiens]                          92   6e-19
gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens]      55   7e-08
gi|37537692 proline-rich protein BstNI subfamily 4 precursor [Ho...    55   7e-08
gi|41349482 proline-rich protein BstNI subfamily 1 isoform 1 pre...    53   4e-07
gi|117306167 proline-rich protein BstNI subfamily 3 precursor [H...    50   2e-06
gi|116284398 WAS/WASL interacting protein family, member 1 [Homo...    49   6e-06
gi|38373695 WAS/WASL interacting protein family, member 1 [Homo ...    49   6e-06
gi|209571537 proline-rich protein BstNI subfamily 2 [Homo sapiens]     49   8e-06
gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens]      48   1e-05
gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Hom...    48   1e-05
gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Hom...    48   1e-05
gi|119829187 alpha 1 type XVII collagen [Homo sapiens]                 48   1e-05
gi|41349486 proline-rich protein BstNI subfamily 1 isoform 3 pre...    48   1e-05
gi|51702526 Wiskott-Aldrich syndrome gene-like protein [Homo sap...    47   2e-05
gi|41349484 proline-rich protein BstNI subfamily 1 isoform 2 pre...    47   2e-05
gi|32140760 collagen, type XXVII, alpha 1 [Homo sapiens]               47   3e-05
gi|4826998 splicing factor proline/glutamine rich (polypyrimidin...    47   3e-05
gi|163965366 nascent polypeptide-associated complex alpha subuni...    47   3e-05
gi|11386161 alpha 2 type IX collagen [Homo sapiens]                    46   4e-05
gi|112382226 atrophin-1 like protein isoform b [Homo sapiens]          46   4e-05
gi|112382224 atrophin-1 like protein isoform a [Homo sapiens]          46   4e-05

>gi|239754873 PREDICTED: similar to hCG2040393 [Homo sapiens]
          Length = 333

 Score =  721 bits (1862), Expect = 0.0
 Identities = 333/333 (100%), Positives = 333/333 (100%)

Query: 1   MEGVLFFFFHLIYSITEPLQPLHAAHTRHSPWVREPEQRHSETGWFRGLCRSTGKRRPGH 60
           MEGVLFFFFHLIYSITEPLQPLHAAHTRHSPWVREPEQRHSETGWFRGLCRSTGKRRPGH
Sbjct: 1   MEGVLFFFFHLIYSITEPLQPLHAAHTRHSPWVREPEQRHSETGWFRGLCRSTGKRRPGH 60

Query: 61  TAPRTQQPKPSGPSSHPREPPLPGAVTGGSLHFQEPPPLGAATAGSRHRQKPPSPGSRHR 120
           TAPRTQQPKPSGPSSHPREPPLPGAVTGGSLHFQEPPPLGAATAGSRHRQKPPSPGSRHR
Sbjct: 61  TAPRTQQPKPSGPSSHPREPPLPGAVTGGSLHFQEPPPLGAATAGSRHRQKPPSPGSRHR 120

Query: 121 WEPPPPGAATATGSRHRREPPSPGATTAGSCHLRSSGSTGTRRAPSHPAALQVPYTREGP 180
           WEPPPPGAATATGSRHRREPPSPGATTAGSCHLRSSGSTGTRRAPSHPAALQVPYTREGP
Sbjct: 121 WEPPPPGAATATGSRHRREPPSPGATTAGSCHLRSSGSTGTRRAPSHPAALQVPYTREGP 180

Query: 181 REPTPPAGPQGFAGSFCAEGSRRGAEVGWGKLEPQGTRRTGSLGVDSSPLSETLGPAQCG 240
           REPTPPAGPQGFAGSFCAEGSRRGAEVGWGKLEPQGTRRTGSLGVDSSPLSETLGPAQCG
Sbjct: 181 REPTPPAGPQGFAGSFCAEGSRRGAEVGWGKLEPQGTRRTGSLGVDSSPLSETLGPAQCG 240

Query: 241 SGRRRACSVLHHHCDGIRFRDCHCAPSACPGPTQDPQAGLCTGQEGYPGTDHGLFMGPHL 300
           SGRRRACSVLHHHCDGIRFRDCHCAPSACPGPTQDPQAGLCTGQEGYPGTDHGLFMGPHL
Sbjct: 241 SGRRRACSVLHHHCDGIRFRDCHCAPSACPGPTQDPQAGLCTGQEGYPGTDHGLFMGPHL 300

Query: 301 LFQVQGERTNLKVEVTELQDVECEEWPRGSSSN 333
           LFQVQGERTNLKVEVTELQDVECEEWPRGSSSN
Sbjct: 301 LFQVQGERTNLKVEVTELQDVECEEWPRGSSSN 333


>gi|239749412 PREDICTED: hypothetical protein XP_002347031 [Homo
           sapiens]
          Length = 333

 Score =  721 bits (1862), Expect = 0.0
 Identities = 333/333 (100%), Positives = 333/333 (100%)

Query: 1   MEGVLFFFFHLIYSITEPLQPLHAAHTRHSPWVREPEQRHSETGWFRGLCRSTGKRRPGH 60
           MEGVLFFFFHLIYSITEPLQPLHAAHTRHSPWVREPEQRHSETGWFRGLCRSTGKRRPGH
Sbjct: 1   MEGVLFFFFHLIYSITEPLQPLHAAHTRHSPWVREPEQRHSETGWFRGLCRSTGKRRPGH 60

Query: 61  TAPRTQQPKPSGPSSHPREPPLPGAVTGGSLHFQEPPPLGAATAGSRHRQKPPSPGSRHR 120
           TAPRTQQPKPSGPSSHPREPPLPGAVTGGSLHFQEPPPLGAATAGSRHRQKPPSPGSRHR
Sbjct: 61  TAPRTQQPKPSGPSSHPREPPLPGAVTGGSLHFQEPPPLGAATAGSRHRQKPPSPGSRHR 120

Query: 121 WEPPPPGAATATGSRHRREPPSPGATTAGSCHLRSSGSTGTRRAPSHPAALQVPYTREGP 180
           WEPPPPGAATATGSRHRREPPSPGATTAGSCHLRSSGSTGTRRAPSHPAALQVPYTREGP
Sbjct: 121 WEPPPPGAATATGSRHRREPPSPGATTAGSCHLRSSGSTGTRRAPSHPAALQVPYTREGP 180

Query: 181 REPTPPAGPQGFAGSFCAEGSRRGAEVGWGKLEPQGTRRTGSLGVDSSPLSETLGPAQCG 240
           REPTPPAGPQGFAGSFCAEGSRRGAEVGWGKLEPQGTRRTGSLGVDSSPLSETLGPAQCG
Sbjct: 181 REPTPPAGPQGFAGSFCAEGSRRGAEVGWGKLEPQGTRRTGSLGVDSSPLSETLGPAQCG 240

Query: 241 SGRRRACSVLHHHCDGIRFRDCHCAPSACPGPTQDPQAGLCTGQEGYPGTDHGLFMGPHL 300
           SGRRRACSVLHHHCDGIRFRDCHCAPSACPGPTQDPQAGLCTGQEGYPGTDHGLFMGPHL
Sbjct: 241 SGRRRACSVLHHHCDGIRFRDCHCAPSACPGPTQDPQAGLCTGQEGYPGTDHGLFMGPHL 300

Query: 301 LFQVQGERTNLKVEVTELQDVECEEWPRGSSSN 333
           LFQVQGERTNLKVEVTELQDVECEEWPRGSSSN
Sbjct: 301 LFQVQGERTNLKVEVTELQDVECEEWPRGSSSN 333


>gi|239743547 PREDICTED: hypothetical protein XP_002342883 [Homo
           sapiens]
          Length = 333

 Score =  721 bits (1862), Expect = 0.0
 Identities = 333/333 (100%), Positives = 333/333 (100%)

Query: 1   MEGVLFFFFHLIYSITEPLQPLHAAHTRHSPWVREPEQRHSETGWFRGLCRSTGKRRPGH 60
           MEGVLFFFFHLIYSITEPLQPLHAAHTRHSPWVREPEQRHSETGWFRGLCRSTGKRRPGH
Sbjct: 1   MEGVLFFFFHLIYSITEPLQPLHAAHTRHSPWVREPEQRHSETGWFRGLCRSTGKRRPGH 60

Query: 61  TAPRTQQPKPSGPSSHPREPPLPGAVTGGSLHFQEPPPLGAATAGSRHRQKPPSPGSRHR 120
           TAPRTQQPKPSGPSSHPREPPLPGAVTGGSLHFQEPPPLGAATAGSRHRQKPPSPGSRHR
Sbjct: 61  TAPRTQQPKPSGPSSHPREPPLPGAVTGGSLHFQEPPPLGAATAGSRHRQKPPSPGSRHR 120

Query: 121 WEPPPPGAATATGSRHRREPPSPGATTAGSCHLRSSGSTGTRRAPSHPAALQVPYTREGP 180
           WEPPPPGAATATGSRHRREPPSPGATTAGSCHLRSSGSTGTRRAPSHPAALQVPYTREGP
Sbjct: 121 WEPPPPGAATATGSRHRREPPSPGATTAGSCHLRSSGSTGTRRAPSHPAALQVPYTREGP 180

Query: 181 REPTPPAGPQGFAGSFCAEGSRRGAEVGWGKLEPQGTRRTGSLGVDSSPLSETLGPAQCG 240
           REPTPPAGPQGFAGSFCAEGSRRGAEVGWGKLEPQGTRRTGSLGVDSSPLSETLGPAQCG
Sbjct: 181 REPTPPAGPQGFAGSFCAEGSRRGAEVGWGKLEPQGTRRTGSLGVDSSPLSETLGPAQCG 240

Query: 241 SGRRRACSVLHHHCDGIRFRDCHCAPSACPGPTQDPQAGLCTGQEGYPGTDHGLFMGPHL 300
           SGRRRACSVLHHHCDGIRFRDCHCAPSACPGPTQDPQAGLCTGQEGYPGTDHGLFMGPHL
Sbjct: 241 SGRRRACSVLHHHCDGIRFRDCHCAPSACPGPTQDPQAGLCTGQEGYPGTDHGLFMGPHL 300

Query: 301 LFQVQGERTNLKVEVTELQDVECEEWPRGSSSN 333
           LFQVQGERTNLKVEVTELQDVECEEWPRGSSSN
Sbjct: 301 LFQVQGERTNLKVEVTELQDVECEEWPRGSSSN 333


>gi|134254450 patched isoform S [Homo sapiens]
          Length = 1296

 Score = 92.0 bits (227), Expect = 6e-19
 Identities = 93/295 (31%), Positives = 113/295 (38%), Gaps = 52/295 (17%)

Query: 58   PGHTAPRTQQPKPSGPSSHPREPPLPGAVTGGS----LHFQEPPPLGAATAGSRHRQKPP 113
            P +   R   P P  P S  R    PG    GS      +     +   +   RH +   
Sbjct: 1035 PANGLNRLPTPSPEPPPSVVRFAMPPGHTHSGSDSSDSEYSSQTTVSGLSEELRHYEAQQ 1094

Query: 114  SPGSR------HRWEPPPPGAATATGSRHRREPPSPGATTAGSCHLRSSGSTGTRRAPSH 167
              G           E P    +T      R  PPS         HL  SGS    R    
Sbjct: 1095 GAGGPAHQVIVEATENPVFAHSTVVHPESRHHPPS---NPRQQPHL-DSGSLPPGRQGQQ 1150

Query: 168  PAALQVPYTREGPREPT--PPAGPQGFAGSFCAEG-SRRGAEVGWGKLEPQGTRRTGSLG 224
            P        R+ PRE    PP  P+  A     EG S       WG   P+G R      
Sbjct: 1151 PR-------RDPPREGLWPPPYRPRRDAFEISTEGHSGPSNRARWG---PRGARSHNP-- 1198

Query: 225  VDSSPLSETLGPAQCGSGRRRACSVLHHHCDGIRFRDCHCA------PSACPGPTQDPQA 278
               +P S  +G +  G            +C  I       +      P   PGP ++P+ 
Sbjct: 1199 --RNPASTAMGSSVPG------------YCQPITTVTASASVTVAVHPPPVPGPGRNPRG 1244

Query: 279  GLCTGQEGYPGTDHGLFMGPHLLFQVQGERTNLKVEVTELQDVECEEWPRGSSSN 333
            GLC G   YP TDHGLF  PH+ F V+ ER + KVEV ELQDVECEE PRGSSSN
Sbjct: 1245 GLCPG---YPETDHGLFEDPHVPFHVRCERRDSKVEVIELQDVECEERPRGSSSN 1296


>gi|134254435 patched isoform S [Homo sapiens]
          Length = 1296

 Score = 92.0 bits (227), Expect = 6e-19
 Identities = 93/295 (31%), Positives = 113/295 (38%), Gaps = 52/295 (17%)

Query: 58   PGHTAPRTQQPKPSGPSSHPREPPLPGAVTGGS----LHFQEPPPLGAATAGSRHRQKPP 113
            P +   R   P P  P S  R    PG    GS      +     +   +   RH +   
Sbjct: 1035 PANGLNRLPTPSPEPPPSVVRFAMPPGHTHSGSDSSDSEYSSQTTVSGLSEELRHYEAQQ 1094

Query: 114  SPGSR------HRWEPPPPGAATATGSRHRREPPSPGATTAGSCHLRSSGSTGTRRAPSH 167
              G           E P    +T      R  PPS         HL  SGS    R    
Sbjct: 1095 GAGGPAHQVIVEATENPVFAHSTVVHPESRHHPPS---NPRQQPHL-DSGSLPPGRQGQQ 1150

Query: 168  PAALQVPYTREGPREPT--PPAGPQGFAGSFCAEG-SRRGAEVGWGKLEPQGTRRTGSLG 224
            P        R+ PRE    PP  P+  A     EG S       WG   P+G R      
Sbjct: 1151 PR-------RDPPREGLWPPPYRPRRDAFEISTEGHSGPSNRARWG---PRGARSHNP-- 1198

Query: 225  VDSSPLSETLGPAQCGSGRRRACSVLHHHCDGIRFRDCHCA------PSACPGPTQDPQA 278
               +P S  +G +  G            +C  I       +      P   PGP ++P+ 
Sbjct: 1199 --RNPASTAMGSSVPG------------YCQPITTVTASASVTVAVHPPPVPGPGRNPRG 1244

Query: 279  GLCTGQEGYPGTDHGLFMGPHLLFQVQGERTNLKVEVTELQDVECEEWPRGSSSN 333
            GLC G   YP TDHGLF  PH+ F V+ ER + KVEV ELQDVECEE PRGSSSN
Sbjct: 1245 GLCPG---YPETDHGLFEDPHVPFHVRCERRDSKVEVIELQDVECEERPRGSSSN 1296


>gi|134254468 patched isoform S [Homo sapiens]
          Length = 1296

 Score = 92.0 bits (227), Expect = 6e-19
 Identities = 93/295 (31%), Positives = 113/295 (38%), Gaps = 52/295 (17%)

Query: 58   PGHTAPRTQQPKPSGPSSHPREPPLPGAVTGGS----LHFQEPPPLGAATAGSRHRQKPP 113
            P +   R   P P  P S  R    PG    GS      +     +   +   RH +   
Sbjct: 1035 PANGLNRLPTPSPEPPPSVVRFAMPPGHTHSGSDSSDSEYSSQTTVSGLSEELRHYEAQQ 1094

Query: 114  SPGSR------HRWEPPPPGAATATGSRHRREPPSPGATTAGSCHLRSSGSTGTRRAPSH 167
              G           E P    +T      R  PPS         HL  SGS    R    
Sbjct: 1095 GAGGPAHQVIVEATENPVFAHSTVVHPESRHHPPS---NPRQQPHL-DSGSLPPGRQGQQ 1150

Query: 168  PAALQVPYTREGPREPT--PPAGPQGFAGSFCAEG-SRRGAEVGWGKLEPQGTRRTGSLG 224
            P        R+ PRE    PP  P+  A     EG S       WG   P+G R      
Sbjct: 1151 PR-------RDPPREGLWPPPYRPRRDAFEISTEGHSGPSNRARWG---PRGARSHNP-- 1198

Query: 225  VDSSPLSETLGPAQCGSGRRRACSVLHHHCDGIRFRDCHCA------PSACPGPTQDPQA 278
               +P S  +G +  G            +C  I       +      P   PGP ++P+ 
Sbjct: 1199 --RNPASTAMGSSVPG------------YCQPITTVTASASVTVAVHPPPVPGPGRNPRG 1244

Query: 279  GLCTGQEGYPGTDHGLFMGPHLLFQVQGERTNLKVEVTELQDVECEEWPRGSSSN 333
            GLC G   YP TDHGLF  PH+ F V+ ER + KVEV ELQDVECEE PRGSSSN
Sbjct: 1245 GLCPG---YPETDHGLFEDPHVPFHVRCERRDSKVEVIELQDVECEERPRGSSSN 1296


>gi|134254452 patched isoform S [Homo sapiens]
          Length = 1296

 Score = 92.0 bits (227), Expect = 6e-19
 Identities = 93/295 (31%), Positives = 113/295 (38%), Gaps = 52/295 (17%)

Query: 58   PGHTAPRTQQPKPSGPSSHPREPPLPGAVTGGS----LHFQEPPPLGAATAGSRHRQKPP 113
            P +   R   P P  P S  R    PG    GS      +     +   +   RH +   
Sbjct: 1035 PANGLNRLPTPSPEPPPSVVRFAMPPGHTHSGSDSSDSEYSSQTTVSGLSEELRHYEAQQ 1094

Query: 114  SPGSR------HRWEPPPPGAATATGSRHRREPPSPGATTAGSCHLRSSGSTGTRRAPSH 167
              G           E P    +T      R  PPS         HL  SGS    R    
Sbjct: 1095 GAGGPAHQVIVEATENPVFAHSTVVHPESRHHPPS---NPRQQPHL-DSGSLPPGRQGQQ 1150

Query: 168  PAALQVPYTREGPREPT--PPAGPQGFAGSFCAEG-SRRGAEVGWGKLEPQGTRRTGSLG 224
            P        R+ PRE    PP  P+  A     EG S       WG   P+G R      
Sbjct: 1151 PR-------RDPPREGLWPPPYRPRRDAFEISTEGHSGPSNRARWG---PRGARSHNP-- 1198

Query: 225  VDSSPLSETLGPAQCGSGRRRACSVLHHHCDGIRFRDCHCA------PSACPGPTQDPQA 278
               +P S  +G +  G            +C  I       +      P   PGP ++P+ 
Sbjct: 1199 --RNPASTAMGSSVPG------------YCQPITTVTASASVTVAVHPPPVPGPGRNPRG 1244

Query: 279  GLCTGQEGYPGTDHGLFMGPHLLFQVQGERTNLKVEVTELQDVECEEWPRGSSSN 333
            GLC G   YP TDHGLF  PH+ F V+ ER + KVEV ELQDVECEE PRGSSSN
Sbjct: 1245 GLCPG---YPETDHGLFEDPHVPFHVRCERRDSKVEVIELQDVECEERPRGSSSN 1296


>gi|134254432 patched isoform L' [Homo sapiens]
          Length = 1446

 Score = 92.0 bits (227), Expect = 6e-19
 Identities = 93/295 (31%), Positives = 113/295 (38%), Gaps = 52/295 (17%)

Query: 58   PGHTAPRTQQPKPSGPSSHPREPPLPGAVTGGS----LHFQEPPPLGAATAGSRHRQKPP 113
            P +   R   P P  P S  R    PG    GS      +     +   +   RH +   
Sbjct: 1185 PANGLNRLPTPSPEPPPSVVRFAMPPGHTHSGSDSSDSEYSSQTTVSGLSEELRHYEAQQ 1244

Query: 114  SPGSR------HRWEPPPPGAATATGSRHRREPPSPGATTAGSCHLRSSGSTGTRRAPSH 167
              G           E P    +T      R  PPS         HL  SGS    R    
Sbjct: 1245 GAGGPAHQVIVEATENPVFAHSTVVHPESRHHPPS---NPRQQPHL-DSGSLPPGRQGQQ 1300

Query: 168  PAALQVPYTREGPREPT--PPAGPQGFAGSFCAEG-SRRGAEVGWGKLEPQGTRRTGSLG 224
            P        R+ PRE    PP  P+  A     EG S       WG   P+G R      
Sbjct: 1301 PR-------RDPPREGLWPPPYRPRRDAFEISTEGHSGPSNRARWG---PRGARSHNP-- 1348

Query: 225  VDSSPLSETLGPAQCGSGRRRACSVLHHHCDGIRFRDCHCA------PSACPGPTQDPQA 278
               +P S  +G +  G            +C  I       +      P   PGP ++P+ 
Sbjct: 1349 --RNPASTAMGSSVPG------------YCQPITTVTASASVTVAVHPPPVPGPGRNPRG 1394

Query: 279  GLCTGQEGYPGTDHGLFMGPHLLFQVQGERTNLKVEVTELQDVECEEWPRGSSSN 333
            GLC G   YP TDHGLF  PH+ F V+ ER + KVEV ELQDVECEE PRGSSSN
Sbjct: 1395 GLCPG---YPETDHGLFEDPHVPFHVRCERRDSKVEVIELQDVECEERPRGSSSN 1446


>gi|134254466 patched isoform M [Homo sapiens]
          Length = 1381

 Score = 92.0 bits (227), Expect = 6e-19
 Identities = 93/295 (31%), Positives = 113/295 (38%), Gaps = 52/295 (17%)

Query: 58   PGHTAPRTQQPKPSGPSSHPREPPLPGAVTGGS----LHFQEPPPLGAATAGSRHRQKPP 113
            P +   R   P P  P S  R    PG    GS      +     +   +   RH +   
Sbjct: 1120 PANGLNRLPTPSPEPPPSVVRFAMPPGHTHSGSDSSDSEYSSQTTVSGLSEELRHYEAQQ 1179

Query: 114  SPGSR------HRWEPPPPGAATATGSRHRREPPSPGATTAGSCHLRSSGSTGTRRAPSH 167
              G           E P    +T      R  PPS         HL  SGS    R    
Sbjct: 1180 GAGGPAHQVIVEATENPVFAHSTVVHPESRHHPPS---NPRQQPHL-DSGSLPPGRQGQQ 1235

Query: 168  PAALQVPYTREGPREPT--PPAGPQGFAGSFCAEG-SRRGAEVGWGKLEPQGTRRTGSLG 224
            P        R+ PRE    PP  P+  A     EG S       WG   P+G R      
Sbjct: 1236 PR-------RDPPREGLWPPPYRPRRDAFEISTEGHSGPSNRARWG---PRGARSHNP-- 1283

Query: 225  VDSSPLSETLGPAQCGSGRRRACSVLHHHCDGIRFRDCHCA------PSACPGPTQDPQA 278
               +P S  +G +  G            +C  I       +      P   PGP ++P+ 
Sbjct: 1284 --RNPASTAMGSSVPG------------YCQPITTVTASASVTVAVHPPPVPGPGRNPRG 1329

Query: 279  GLCTGQEGYPGTDHGLFMGPHLLFQVQGERTNLKVEVTELQDVECEEWPRGSSSN 333
            GLC G   YP TDHGLF  PH+ F V+ ER + KVEV ELQDVECEE PRGSSSN
Sbjct: 1330 GLCPG---YPETDHGLFEDPHVPFHVRCERRDSKVEVIELQDVECEERPRGSSSN 1381


>gi|134254446 patched isoform L [Homo sapiens]
          Length = 1447

 Score = 92.0 bits (227), Expect = 6e-19
 Identities = 93/295 (31%), Positives = 113/295 (38%), Gaps = 52/295 (17%)

Query: 58   PGHTAPRTQQPKPSGPSSHPREPPLPGAVTGGS----LHFQEPPPLGAATAGSRHRQKPP 113
            P +   R   P P  P S  R    PG    GS      +     +   +   RH +   
Sbjct: 1186 PANGLNRLPTPSPEPPPSVVRFAMPPGHTHSGSDSSDSEYSSQTTVSGLSEELRHYEAQQ 1245

Query: 114  SPGSR------HRWEPPPPGAATATGSRHRREPPSPGATTAGSCHLRSSGSTGTRRAPSH 167
              G           E P    +T      R  PPS         HL  SGS    R    
Sbjct: 1246 GAGGPAHQVIVEATENPVFAHSTVVHPESRHHPPS---NPRQQPHL-DSGSLPPGRQGQQ 1301

Query: 168  PAALQVPYTREGPREPT--PPAGPQGFAGSFCAEG-SRRGAEVGWGKLEPQGTRRTGSLG 224
            P        R+ PRE    PP  P+  A     EG S       WG   P+G R      
Sbjct: 1302 PR-------RDPPREGLWPPPYRPRRDAFEISTEGHSGPSNRARWG---PRGARSHNP-- 1349

Query: 225  VDSSPLSETLGPAQCGSGRRRACSVLHHHCDGIRFRDCHCA------PSACPGPTQDPQA 278
               +P S  +G +  G            +C  I       +      P   PGP ++P+ 
Sbjct: 1350 --RNPASTAMGSSVPG------------YCQPITTVTASASVTVAVHPPPVPGPGRNPRG 1395

Query: 279  GLCTGQEGYPGTDHGLFMGPHLLFQVQGERTNLKVEVTELQDVECEEWPRGSSSN 333
            GLC G   YP TDHGLF  PH+ F V+ ER + KVEV ELQDVECEE PRGSSSN
Sbjct: 1396 GLCPG---YPETDHGLFEDPHVPFHVRCERRDSKVEVIELQDVECEERPRGSSSN 1447


>gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens]
          Length = 1466

 Score = 55.5 bits (132), Expect = 7e-08
 Identities = 48/141 (34%), Positives = 54/141 (38%), Gaps = 14/141 (9%)

Query: 58  PGHTAPRTQQPKPS--GPSSHPREPPLPGAVTGGSLHFQEPPPLGAATAGSRHRQKPPSP 115
           PG   P  +  KP   GP      P  PG         +  PP  A   G R    PP P
Sbjct: 644 PGTGGPPGENGKPGEPGPKGDAGAPGAPGGKGDAGAPGERGPPGLAGAPGLRGGAGPPGP 703

Query: 116 --GSRHRWEPPPPGAATATGSRHRREPPSPGATTAGSCHLRSSGSTGTRRAPSHPAALQV 173
             G      P PPGAA   G +       PG        L S G  G +  P  P A  V
Sbjct: 704 EGGKGAAGPPGPPGAAGTPGLQGM-----PGERGG----LGSPGPKGDKGEPGGPGADGV 754

Query: 174 PYTREGPREPTPPAGPQGFAG 194
           P  ++GPR PT P GP G AG
Sbjct: 755 P-GKDGPRGPTGPIGPPGPAG 774



 Score = 43.9 bits (102), Expect = 2e-04
 Identities = 44/152 (28%), Positives = 53/152 (34%), Gaps = 17/152 (11%)

Query: 46  FRGLCRSTGKRRPGHTAPRTQQ--PKPSGPSSHPREPPLPGAVTGGSLHFQEPPPLGAAT 103
           FRG     G   PG   P  ++  P P+GP     EP   G   G  +      P G  +
Sbjct: 490 FRGPAGPNGI--PGEKGPAGERGAPGPAGPRGAAGEPGRDGVPGGPGMRGMPGSPGGPGS 547

Query: 104 AGSRHRQKPPSPGSR-HRWEPPPPGAATATGSRHRREPPSPGATTAGSCHLRSSGSTGTR 162
            G     KP  PGS+     P PPG +   G       P P           + G  G R
Sbjct: 548 DG-----KPGPPGSQGESGRPGPPGPSGPRGQPGVMGFPGPKGNDG------APGKNGER 596

Query: 163 RAPSHPAALQVPYTREGPREPTPPAGPQGFAG 194
             P  P   Q P  + G   P  P GP G  G
Sbjct: 597 GGPGGPGP-QGPPGKNGETGPQGPPGPTGPGG 627



 Score = 43.1 bits (100), Expect = 3e-04
 Identities = 67/244 (27%), Positives = 83/244 (34%), Gaps = 36/244 (14%)

Query: 52  STGKRRPGHTAPRTQQPKPSGPSSHPREPPLPGAVTGGSLHFQEPPPLGAATAGSRHRQK 111
           S GK  P  +   + +P P GPS  PR  P       G + F  P     A   +  R  
Sbjct: 547 SDGKPGPPGSQGESGRPGPPGPSG-PRGQP-------GVMGFPGPKGNDGAPGKNGERGG 598

Query: 112 PPSPGSRHRWEPPPPGAATATGSRHRREPPSPGATTAGSCHLRSSGSTGTRRAPSHPAAL 171
           P  PG +      PPG    TG +    P  PG            G TG    P  P  L
Sbjct: 599 PGGPGPQ-----GPPGKNGETGPQGPPGPTGPGG---------DKGDTG----PPGPQGL 640

Query: 172 Q-VPYTREGPREPTPPA--GPQGFAGSFCAEGSRRGAEVGWGKLEPQGTRRTGSLGVDSS 228
           Q +P T   P E   P   GP+G AG+  A G +  A    G+  P G      L   + 
Sbjct: 641 QGLPGTGGPPGENGKPGEPGPKGDAGAPGAPGGKGDAGAP-GERGPPGLAGAPGLRGGAG 699

Query: 229 PLSETLGPAQCG-SGRRRACSVLHHHCDGIRFRDCHCAPSACPGPTQDPQAGLCTGQEGY 287
           P     G    G  G   A         G++           PGP  D       G +G 
Sbjct: 700 PPGPEGGKGAAGPPGPPGAAGT-----PGLQGMPGERGGLGSPGPKGDKGEPGGPGADGV 754

Query: 288 PGTD 291
           PG D
Sbjct: 755 PGKD 758



 Score = 42.0 bits (97), Expect = 8e-04
 Identities = 67/257 (26%), Positives = 78/257 (30%), Gaps = 48/257 (18%)

Query: 58  PGHTAPR--TQQPKPSGPSSHPRE------PPLPGAV----TGGSLHFQEPPPLGAATAG 105
           PG   PR  T    P GP+  P +      P LPG      + G      PP        
Sbjct: 755 PGKDGPRGPTGPIGPPGPAGQPGDKGEGGAPGLPGIAGPRGSPGERGETGPPGPAGFPGA 814

Query: 106 SRHRQKPPSPGSR----HRWEPPPPGAATATGSRHRREPPSPGATTAGSCHLRSSGSTGT 161
                +P   G R     + E  PPG A   G      PP P             G  G 
Sbjct: 815 PGQNGEPGGKGERGAPGEKGEGGPPGVAGPPGGSGPAGPPGP------------QGVKGE 862

Query: 162 RRAPSHPAALQVPYTREGPREPTP-----PAGPQGFAGSFCAEG--SRRGAEVGWGKLEP 214
           R +P  P A   P  R  P  P       P GP G  G     G     GA    G   P
Sbjct: 863 RGSPGGPGAAGFPGARGLPGPPGSNGNPGPPGPSGSPGKDGPPGPAGNTGAPGSPGVSGP 922

Query: 215 QGTRRTGSLGVDSSPLSETLGPAQCGSGRRRACSVLHHHCDGIRFRDCHCAPSACPGPTQ 274
           +G    G  G   SP ++  GP         A         GI        P   PGP  
Sbjct: 923 KGD--AGQPGEKGSPGAQ--GPPGAPGPLGIA---------GITGARGLAGPPGMPGPRG 969

Query: 275 DPQAGLCTGQEGYPGTD 291
            P      G+ G PG +
Sbjct: 970 SPGPQGVKGESGKPGAN 986



 Score = 39.7 bits (91), Expect = 0.004
 Identities = 45/162 (27%), Positives = 58/162 (35%), Gaps = 22/162 (13%)

Query: 72   GPSSHPREPPLPGAVTGGSLHFQEPPPLG-AATAGSRHRQKPPSPGSRHRWEPPPPGAAT 130
            G +  P  P  PG       H   P P+G A  +G R    P  P           GA  
Sbjct: 1035 GENGSPGAPGAPG-------HPGPPGPVGPAGKSGDRGESGPAGPA----------GAPG 1077

Query: 131  ATGSRHRREPPSPGATTAGSCHLRSSGSTGTRRAPSHPAA--LQVPYTREGPREPTPPAG 188
              GSR    P  P      +    ++G  G R  P +P A     P  ++G      PAG
Sbjct: 1078 PAGSRGAPGPQGPRGDKGETGERGAAGIKGHRGFPGNPGAPGSPGPAGQQGAIGSPGPAG 1137

Query: 189  PQGFAGSFCAEGSRRGAEVGWGKLEPQGTR-RTGSLGVDSSP 229
            P+G  G     G + G     G + P G R   G  G + SP
Sbjct: 1138 PRGPVGPSGPPG-KDGTSGHPGPIGPPGPRGNRGERGSEGSP 1178



 Score = 37.0 bits (84), Expect = 0.025
 Identities = 65/232 (28%), Positives = 79/232 (34%), Gaps = 23/232 (9%)

Query: 72  GPSSHPREPPLPGAV-TGGSLHFQEPPPL--GAATAGSRHRQKPPSPGSRHRWEPPPPGA 128
           GP+  P  P L GA    G       P L  GA   G    +  P P    R E   PG 
Sbjct: 399 GPAGIPGAPGLMGARGPPGPAGANGAPGLRGGAGEPGKNGAKGEPGPRGE-RGEAGIPGV 457

Query: 129 ATATGSRHRR-EPPSPGATTAGSCHLRSSGSTGTR-----RAPSHPAALQVPYTREGPRE 182
             A G   +   P  PGA           G+ G R     R P+ P  +       G R 
Sbjct: 458 PGAKGEDGKDGSPGEPGANGL-------PGAAGERGAPGFRGPAGPNGIPGEKGPAGERG 510

Query: 183 PTPPAGPQGFAGSFCAEGSRRGAEVGWGKLEPQGTRRTGSLGVDSSPLSETLGPAQCG-S 241
              PAGP+G AG    +G   G  +      P G    G  G   S   E+  P   G S
Sbjct: 511 APGPAGPRGAAGEPGRDGVPGGPGMRGMPGSPGGPGSDGKPGPPGSQ-GESGRPGPPGPS 569

Query: 242 GRRRACSVL----HHHCDGIRFRDCHCAPSACPGPTQDPQAGLCTGQEGYPG 289
           G R    V+        DG   ++        PGP   P     TG +G PG
Sbjct: 570 GPRGQPGVMGFPGPKGNDGAPGKNGERGGPGGPGPQGPPGKNGETGPQGPPG 621



 Score = 35.4 bits (80), Expect = 0.072
 Identities = 46/168 (27%), Positives = 53/168 (31%), Gaps = 29/168 (17%)

Query: 48  GLCRSTGKRRPGHTAPRTQQPKPSGPSSHPREPPLPGAV-----------TGGSLHFQEP 96
           GL  + G R          QP P GP      P  PGA             G      EP
Sbjct: 312 GLPGAAGARGNDGARGSDGQPGPPGPPGTAGFPGSPGAKGEVGPAGSPGSNGAPGQRGEP 371

Query: 97  PPLGAATAGSRHRQKPP----SPGSRHRWEPPPPGAATATGSRHRREPPSPGATTAGSCH 152
            P G A  G++    PP    SPG +   E  P G   A G    R PP P         
Sbjct: 372 GPQGHA--GAQGPPGPPGINGSPGGKG--EMGPAGIPGAPGLMGARGPPGPAGANGAPGL 427

Query: 153 LRSSGSTGTRRAPSHPAALQVPYTREGPREPTPPAGPQGFAGSFCAEG 200
              +G  G   A   P          GPR     AG  G  G+   +G
Sbjct: 428 RGGAGEPGKNGAKGEP----------GPRGERGEAGIPGVPGAKGEDG 465



 Score = 35.0 bits (79), Expect = 0.093
 Identities = 42/123 (34%), Positives = 49/123 (39%), Gaps = 21/123 (17%)

Query: 25   AHTRHSPWVREPEQRHSETGWFRGLCRSTGKR-------RPGHTAPRTQQ-----PKPSG 72
            A +R +P  + P     ETG  RG     G R        PG   P  QQ     P P+G
Sbjct: 1079 AGSRGAPGPQGPRGDKGETGE-RGAAGIKGHRGFPGNPGAPGSPGPAGQQGAIGSPGPAG 1137

Query: 73   PSSHPREPPLPGAVTGGSLHFQEPPPLGA-ATAGSR-HRQKPPSPGSRHRWEPPPPGAAT 130
            P   P  P  P    G S H   P P+G     G+R  R    SPG  H  +P PPG   
Sbjct: 1138 PRG-PVGPSGPPGKDGTSGH---PGPIGPPGPRGNRGERGSEGSPG--HPGQPGPPGPPG 1191

Query: 131  ATG 133
            A G
Sbjct: 1192 APG 1194



 Score = 34.3 bits (77), Expect = 0.16
 Identities = 50/179 (27%), Positives = 60/179 (33%), Gaps = 21/179 (11%)

Query: 61  TAPRTQQPK---PSGPSSHPREPPLPG-----AVTG--GSLHFQEPPPLGAATAGSRHRQ 110
           TAP T+ P    P GP   P  P +PG      + G  GS     PP +  +        
Sbjct: 93  TAP-TRPPNGQGPQGPKGDPGPPGIPGRNGDPGIPGQPGSPGSPGPPGICESCPTGPQNY 151

Query: 111 KPPSPGSRHRWEPPPPGAATATGSRHRREPPSPGATTAGSCHLRSSGSTGTRRAPSHPAA 170
            P       +      G A   G      PP P  T   S H  S GS G +  P  P  
Sbjct: 152 SPQYDSYDVKSGVAVGGLAGYPGPAGPPGPPGPPGT---SGHPGSPGSPGYQGPPGEPGQ 208

Query: 171 LQVPYTREGPREPTPPAGPQGFAGSFCAEGSRRGAEVGWGKLEPQGTRRTGSLGVDSSP 229
              P    GP     P+GP G  G    E  R G     G   P G +  G  G+   P
Sbjct: 209 AG-PSGPPGPPGAIGPSGPAGKDG----ESGRPGRPGERGLPGPPGIK--GPAGIPGFP 260



 Score = 33.9 bits (76), Expect = 0.21
 Identities = 67/267 (25%), Positives = 78/267 (29%), Gaps = 83/267 (31%)

Query: 58  PGHTAPRTQQPKPSGPSSHPREPPLPGAVTGGSLHFQEPPPLGAATAGSRHRQKPPSPGS 117
           PG   P    P P G S HP  P  PG        +Q PP       G   +  P  P  
Sbjct: 173 PGPAGP-PGPPGPPGTSGHPGSPGSPG--------YQGPP-------GEPGQAGPSGP-- 214

Query: 118 RHRWEPPPPGAATATGSRHRREPPSPGATTAGSCHLRSSGSTGTRRAPSHPAALQVPYTR 177
                P PPGA   +G                      +G  G    P  P    +P   
Sbjct: 215 -----PGPPGAIGPSG---------------------PAGKDGESGRPGRPGERGLP--- 245

Query: 178 EGPREPTPPAGPQGFAG-----SFCAEGSRRGAEVGWGKLE-----PQGTRRTGSLGVDS 227
            GP     PAG  GF G      F      +G E G   L+     P      G +G   
Sbjct: 246 -GPPGIKGPAGIPGFPGMKGHRGFDGRNGEKG-ETGAPGLKGENGLPGENGAPGPMGPRG 303

Query: 228 SPLSETLGPAQCGSGRRRACSVLHHHCDGIRFRDCHCAPSACP---------------GP 272
           +P  E   P   G+   R         DG R  D    P   P               GP
Sbjct: 304 AP-GERGRPGLPGAAGARG-------NDGARGSDGQPGPPGPPGTAGFPGSPGAKGEVGP 355

Query: 273 TQDPQAGLCTGQEGYPGTD-HGLFMGP 298
              P +    GQ G PG   H    GP
Sbjct: 356 AGSPGSNGAPGQRGEPGPQGHAGAQGP 382


>gi|37537692 proline-rich protein BstNI subfamily 4 precursor [Homo
           sapiens]
          Length = 247

 Score = 55.5 bits (132), Expect = 7e-08
 Identities = 44/157 (28%), Positives = 60/157 (38%), Gaps = 28/157 (17%)

Query: 54  GKRRPGHTAPRTQQPKPSGPSSHPRE--------PPLPGAVTG----GSLHFQEPPPLGA 101
           G+R  G   P+   P P  P   P +        PP PG   G    G    Q PPP   
Sbjct: 38  GRRPQGGNQPQRPPPPPGKPQGPPPQGGNQSQGPPPPPGKPEGRPPQGGNQSQGPPP--- 94

Query: 102 ATAGSRHRQKPPSPGSRHRWEPPPPGAATAT----GSRHRREPPSPGATTAGSCHLRSSG 157
                +  + PP  G++ +  PPPPG         G++  R PP PG            G
Sbjct: 95  --HPGKPERPPPQGGNQSQGTPPPPGKPERPPPQGGNQSHRPPPPPGKPERPP----PQG 148

Query: 158 STGTRRAPSHPAALQVPYTREGPRE---PTPPAGPQG 191
              ++  P HP   + P  +EG +     +PP  PQG
Sbjct: 149 GNQSQGPPPHPGKPEGPPPQEGNKSRSARSPPGKPQG 185



 Score = 54.3 bits (129), Expect = 1e-07
 Identities = 42/130 (32%), Positives = 56/130 (43%), Gaps = 24/130 (18%)

Query: 64  RTQQPKPSGPSSHPREPPLPGAVTGGSLHFQEPPPLGAATAGSRHRQKPPSPGSRHRWEP 123
           + ++P P G +     PP PG         + PPP G    G++  + PP PG   R  P
Sbjct: 98  KPERPPPQGGNQSQGTPPPPGKP-------ERPPPQG----GNQSHRPPPPPGKPER--P 144

Query: 124 PPPGAATATGSRHRREPPSPGATTAGSCHLRSSGSTGTRRAPSHPAALQVPYTREG--PR 181
           PP G     G++ +  PP PG    G      + S   R  P  P   Q P  +EG  P+
Sbjct: 145 PPQG-----GNQSQGPPPHPG-KPEGPPPQEGNKSRSARSPPGKP---QGPPQQEGNKPQ 195

Query: 182 EPTPPAGPQG 191
            P PP  PQG
Sbjct: 196 GPPPPGKPQG 205



 Score = 43.1 bits (100), Expect = 3e-04
 Identities = 50/189 (26%), Positives = 68/189 (35%), Gaps = 35/189 (18%)

Query: 69  KPSGPSSHPREPPLPGAVTGGSLHFQEPPPLGAATAGSRHRQKPPSP-----------GS 117
           +P G +   R PP PG   G       PPP      G    Q PP P           G+
Sbjct: 40  RPQGGNQPQRPPPPPGKPQG-------PPP-----QGGNQSQGPPPPPGKPEGRPPQGGN 87

Query: 118 RHRWEPPPPGAATAT----GSRHRREPPSPGATTAGSCHLRSSGSTGTRRAPSHPAALQV 173
           + +  PP PG         G++ +  PP PG            G   + R P  P   + 
Sbjct: 88  QSQGPPPHPGKPERPPPQGGNQSQGTPPPPGKPERPP----PQGGNQSHRPPPPPGKPER 143

Query: 174 PYTREGPREPTPPAGPQGFAGSFCAEGSR-RGAEVGWGKLEPQG-TRRTGSLGVDSSPLS 231
           P  + G +   PP  P    G    EG++ R A    GK  PQG  ++ G+      P  
Sbjct: 144 PPPQGGNQSQGPPPHPGKPEGPPPQEGNKSRSARSPPGK--PQGPPQQEGNKPQGPPPPG 201

Query: 232 ETLGPAQCG 240
           +  GP   G
Sbjct: 202 KPQGPPPAG 210



 Score = 37.4 bits (85), Expect = 0.019
 Identities = 24/87 (27%), Positives = 32/87 (36%), Gaps = 12/87 (13%)

Query: 55  KRRPGHTAPRTQQPKPSGPSSHPREPPLPGAVTGGSLHFQEPPPLGAATAGSRHRQKPPS 114
           K R   + P   Q  P    + P+ PP PG   G       PPP     AG   +Q    
Sbjct: 172 KSRSARSPPGKPQGPPQQEGNKPQGPPPPGKPQG-------PPP-----AGGNPQQPQAP 219

Query: 115 PGSRHRWEPPPPGAATATGSRHRREPP 141
           P  + +  PPPP           ++PP
Sbjct: 220 PAGKPQGPPPPPQGGRPPRPAQGQQPP 246



 Score = 35.8 bits (81), Expect = 0.055
 Identities = 28/104 (26%), Positives = 40/104 (38%), Gaps = 13/104 (12%)

Query: 90  SLHFQEPPPLGAATAGSRHRQKPPSPGSRHRWEPPPPGAATATGSRHRREPPSPGATTAG 149
           SL      P G    G    Q+PP P  + +  PPP G     G++ +  PP PG     
Sbjct: 28  SLFLISGKPEGRRPQGGNQPQRPPPPPGKPQ-GPPPQG-----GNQSQGPPPPPGKPEGR 81

Query: 150 SCHLRSSGSTGTRRAPSHPAALQVPYTREGPRE---PTPPAGPQ 190
                  G   ++  P HP   + P  + G +    P PP  P+
Sbjct: 82  P----PQGGNQSQGPPPHPGKPERPPPQGGNQSQGTPPPPGKPE 121



 Score = 32.3 bits (72), Expect = 0.61
 Identities = 37/127 (29%), Positives = 42/127 (33%), Gaps = 23/127 (18%)

Query: 57  RPGHTAPRTQQPKPSG------PSSHPREPPLPGAVTGG-SLHFQEPP--PLGAATAGSR 107
           RP     + ++P P G      P  HP +P  P    G  S   + PP  P G       
Sbjct: 133 RPPPPPGKPERPPPQGGNQSQGPPPHPGKPEGPPPQEGNKSRSARSPPGKPQGPPQQEGN 192

Query: 108 HRQKPPSPGSRHRWEPPPPGAATATGSRHRREPPSPGATTAGSCHLRSSGSTGTRRAPSH 167
             Q PP PG      PPP G            P  P A  AG          G R  P  
Sbjct: 193 KPQGPPPPGKPQ--GPPPAGG----------NPQQPQAPPAGKPQGPPPPPQGGR--PPR 238

Query: 168 PAALQVP 174
           PA  Q P
Sbjct: 239 PAQGQQP 245


>gi|41349482 proline-rich protein BstNI subfamily 1 isoform 1
           preproprotein [Homo sapiens]
          Length = 331

 Score = 52.8 bits (125), Expect = 4e-07
 Identities = 42/135 (31%), Positives = 57/135 (42%), Gaps = 22/135 (16%)

Query: 64  RTQQPKPSGPSSHPREPPLPGAVTGGSLHFQEPPPLGAATAGSRH-----RQKPPSPGSR 118
           + Q P P G    P+ PP PG   G       PPP G  +  S+      +  PP  G++
Sbjct: 178 KPQGPPPQG-GKKPQGPPPPGKPQG-------PPPQGDKSRSSQSPPGKPQGPPPQGGNQ 229

Query: 119 HRWEPPPPG---AATATGSRHRREPPSPGATTAGSCHLRSSGSTGTRRAPSHPAALQVPY 175
            +  PPPPG        G    + PP PG          + G + ++ A S P   Q P 
Sbjct: 230 PQGPPPPPGKPQGPPPQGGNKPQGPPPPGKPQGPP----AQGGSKSQSARSPPGKPQGPP 285

Query: 176 TREG--PREPTPPAG 188
            +EG  P+ P PPAG
Sbjct: 286 QQEGNNPQGPPPPAG 300



 Score = 47.4 bits (111), Expect = 2e-05
 Identities = 42/139 (30%), Positives = 56/139 (40%), Gaps = 24/139 (17%)

Query: 64  RTQQPKPSGPSSHPREPPLPGAVTGGSLHFQEPPPLGAATAGSRH-----RQKPPSPGSR 118
           + Q P P G  + P+ PP PG   G       PPP G  +   R      +  PP  G++
Sbjct: 117 KPQGPPPQG-GNRPQGPPPPGKPQG-------PPPQGDKSRSPRSPPGKPQGPPPQGGNQ 168

Query: 119 HRWEPPPPG---AATATGSRHRREPPSPGATTAGSCHLRSSGSTGTRRAPSHPAALQVPY 175
            +  PPPPG        G +  + PP PG                +R + S P   Q P 
Sbjct: 169 PQGPPPPPGKPQGPPPQGGKKPQGPPPPGKPQG-----PPPQGDKSRSSQSPPGKPQGPP 223

Query: 176 TREG--PREPTPPAG-PQG 191
            + G  P+ P PP G PQG
Sbjct: 224 PQGGNQPQGPPPPPGKPQG 242



 Score = 47.0 bits (110), Expect = 2e-05
 Identities = 44/149 (29%), Positives = 56/149 (37%), Gaps = 22/149 (14%)

Query: 54  GKRRPGHTAP--RTQQPKPSGPSSHPREPPLPGAVTGGSLHFQEPPPLGAATAGSRH--- 108
           G +  G   P  + Q P P G  + P+ PP PG   G       PPP G  +   R    
Sbjct: 44  GNKPQGPPPPPGKPQGPPPQG-GNKPQGPPPPGKPQG-------PPPQGDKSRSPRSPPG 95

Query: 109 --RQKPPSPGSRHRWEPPPPG---AATATGSRHRREPPSPGATTAGSCHLRSSGSTGTRR 163
             +  PP  G++ +  PPPPG        G    + PP PG         +   S   R 
Sbjct: 96  KPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGNRPQGPPPPGKPQGPP--PQGDKSRSPRS 153

Query: 164 APSHPAALQVPYTREGPREPTPPAG-PQG 191
            P  P     P     P+ P PP G PQG
Sbjct: 154 PPGKPQG-PPPQGGNQPQGPPPPPGKPQG 181



 Score = 45.8 bits (107), Expect = 5e-05
 Identities = 45/147 (30%), Positives = 51/147 (34%), Gaps = 19/147 (12%)

Query: 54  GKRRPGHTAP-RTQQPKPSGPSSH-PREPP--LPGAVTGGSLHFQEPPPLGAATAGSRHR 109
           G R  G   P + Q P P G  S  PR PP    G    G    Q PPP      G    
Sbjct: 126 GNRPQGPPPPGKPQGPPPQGDKSRSPRSPPGKPQGPPPQGGNQPQGPPPPPGKPQG---- 181

Query: 110 QKPPSPGSRHRWEPPPPGAATAT---GSRHRREPPSPGATTAGSCHLRSSGSTGTRRAPS 166
             PP  G +    PPPPG        G + R     PG            G    +  P 
Sbjct: 182 --PPPQGGKKPQGPPPPGKPQGPPPQGDKSRSSQSPPGKPQGPP----PQGGNQPQGPPP 235

Query: 167 HPAALQVPYTREG--PREPTPPAGPQG 191
            P   Q P  + G  P+ P PP  PQG
Sbjct: 236 PPGKPQGPPPQGGNKPQGPPPPGKPQG 262



 Score = 37.0 bits (84), Expect = 0.025
 Identities = 36/138 (26%), Positives = 47/138 (34%), Gaps = 21/138 (15%)

Query: 55  KRRPGHTAP-RTQQPKPSGPSSHPREPPLPGAVTG----GSLHFQEPPPLGAATAGSRHR 109
           K R   + P + Q P P G +     PP PG   G    G    Q PPP G         
Sbjct: 208 KSRSSQSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGNKPQGPPPPGKP------- 260

Query: 110 QKPPSPG-SRHRWEPPPPGAATATGSRHRREPPSPGATTAGSCHLRSSGSTGTRRAPSHP 168
           Q PP+ G S+ +    PPG       +    P  P     G+     +   G  + P  P
Sbjct: 261 QGPPAQGGSKSQSARSPPGKPQGPPQQEGNNPQGPPPPAGGNPQQPQAPPAGQPQGPPRP 320

Query: 169 AALQVPYTREGPREPTPP 186
                    +G R   PP
Sbjct: 321 P--------QGGRPSRPP 330



 Score = 34.3 bits (77), Expect = 0.16
 Identities = 31/108 (28%), Positives = 36/108 (33%), Gaps = 17/108 (15%)

Query: 98  PLGAATAGSRHRQKPPSP----------GSRHRWEPPPPGAATATGSR--HRREPPSPGA 145
           P G +  G    Q PP P          G      PPPPG       +    R P SP  
Sbjct: 36  PQGPSPQGGNKPQGPPPPPGKPQGPPPQGGNKPQGPPPPGKPQGPPPQGDKSRSPRSPPG 95

Query: 146 TTAGSCHLRSSGSTGTRRAPSHPAALQVPYTREG--PREPTPPAGPQG 191
              G       G    +  P  P   Q P  + G  P+ P PP  PQG
Sbjct: 96  KPQGP---PPQGGNQPQGPPPPPGKPQGPPPQGGNRPQGPPPPGKPQG 140


>gi|117306167 proline-rich protein BstNI subfamily 3 precursor [Homo
           sapiens]
          Length = 309

 Score = 50.4 bits (119), Expect = 2e-06
 Identities = 41/141 (29%), Positives = 51/141 (36%), Gaps = 36/141 (25%)

Query: 57  RPGHTAPRTQQPKPSGPSSHPREPPLPGAVTG----GSLHFQEPPPLGAATAGSRHRQKP 112
           RPG    + + P P G +     PP PG   G    G    Q PPP      G      P
Sbjct: 158 RPG----KPEGPPPQGGNQSQGPPPHPGKPEGPPPQGGNQSQGPPPRPGKPEGP-----P 208

Query: 113 PSPGSRHRWEPPPPGAATATGSRHRREPPSPGATTAGSCHLRSSGSTGTRRAPSHPAALQ 172
           P  G++ +  PP PG      S+   +P  P                     P HP   Q
Sbjct: 209 PQGGNQSQGPPPRPGKPEGPPSQGGNKPQGP---------------------PPHPGKPQ 247

Query: 173 VPYTREG--PREPTPPAGPQG 191
            P  +EG  P+ P PP  PQG
Sbjct: 248 GPPPQEGNKPQRPPPPGRPQG 268



 Score = 47.0 bits (110), Expect = 2e-05
 Identities = 39/152 (25%), Positives = 54/152 (35%), Gaps = 25/152 (16%)

Query: 54  GKRRPGHTAPRTQQPKPSGPSSHPRE--------PPLPGAVTG----GSLHFQEPPPLGA 101
           G+R  G   P+   P P  P   P +        PP PG   G    G    Q PPP   
Sbjct: 38  GRRPQGGNQPQRTPPPPGKPEGRPPQGGNQSQGPPPRPGKPEGPPPQGGNQSQGPPPRPG 97

Query: 102 ATAGSRHRQKPPSPGSRHRWEPPPPGAATAT----GSRHRREPPSPGATTAGSCHLRSSG 157
              G     +PP  G++ +  PP PG         G++ +  PP PG            G
Sbjct: 98  KPEG-----QPPQGGNQSQGPPPRPGKPEGPPPQGGNQSQGPPPRPGKPEGPP----PQG 148

Query: 158 STGTRRAPSHPAALQVPYTREGPREPTPPAGP 189
              ++  P  P   + P  + G +   PP  P
Sbjct: 149 GNQSQGPPPRPGKPEGPPPQGGNQSQGPPPHP 180



 Score = 42.7 bits (99), Expect = 4e-04
 Identities = 35/140 (25%), Positives = 51/140 (36%), Gaps = 17/140 (12%)

Query: 58  PGHTAPRTQQPKPSGPSSHPREPPLPGAVTG----GSLHFQEPPPLGAATAGSRHRQKPP 113
           P   + + +  +P G +   R PP PG   G    G    Q PPP      G      PP
Sbjct: 29  PSVISGKPEGRRPQGGNQPQRTPPPPGKPEGRPPQGGNQSQGPPPRPGKPEG-----PPP 83

Query: 114 SPGSRHRWEPPPPGAATAT----GSRHRREPPSPGATTAGSCHLRSSGSTGTRRAPSHPA 169
             G++ +  PP PG         G++ +  PP PG            G   ++  P  P 
Sbjct: 84  QGGNQSQGPPPRPGKPEGQPPQGGNQSQGPPPRPGKPEGPP----PQGGNQSQGPPPRPG 139

Query: 170 ALQVPYTREGPREPTPPAGP 189
             + P  + G +   PP  P
Sbjct: 140 KPEGPPPQGGNQSQGPPPRP 159



 Score = 41.2 bits (95), Expect = 0.001
 Identities = 29/88 (32%), Positives = 33/88 (37%), Gaps = 9/88 (10%)

Query: 57  RPGHTA--PRTQQPKPSGPSSHPREPPLPGAVTGGSLHFQEPP--PLGAATAGSRHRQKP 112
           RPG     P     KP GP  HP +P  P    G       PP  P G    G   +Q  
Sbjct: 221 RPGKPEGPPSQGGNKPQGPPPHPGKPQGPPPQEGNKPQRPPPPGRPQGPPPPGGNPQQPL 280

Query: 113 PSPGSRHRWEPPPPGAATATGSRHRREP 140
           P P  + +  PPPP      G R  R P
Sbjct: 281 PPPAGKPQGPPPPP-----QGGRPHRPP 303



 Score = 35.8 bits (81), Expect = 0.055
 Identities = 33/131 (25%), Positives = 50/131 (38%), Gaps = 22/131 (16%)

Query: 65  TQQPKPSGPSSHP--REPPLPGAVTGGSLHFQEPPPLGAATAGSRHRQKPPSPGSRHRWE 122
           +Q+  PS  S  P  R P       GG+   + PPP G      +   +PP  G++ +  
Sbjct: 24  SQEESPSVISGKPEGRRPQ------GGNQPQRTPPPPG------KPEGRPPQGGNQSQGP 71

Query: 123 PPPPGAATAT----GSRHRREPPSPGATTAGSCHLRSSGSTGTRRAPSHPAALQVPYTRE 178
           PP PG         G++ +  PP PG            G   ++  P  P   + P  + 
Sbjct: 72  PPRPGKPEGPPPQGGNQSQGPPPRPGKPEGQP----PQGGNQSQGPPPRPGKPEGPPPQG 127

Query: 179 GPREPTPPAGP 189
           G +   PP  P
Sbjct: 128 GNQSQGPPPRP 138



 Score = 30.8 bits (68), Expect = 1.8
 Identities = 25/77 (32%), Positives = 31/77 (40%), Gaps = 12/77 (15%)

Query: 72  GPSSHPREPPLPGAVTGGSLHFQEPP----PLGAATAGSRHRQKPPSPGSRHRWEPPPPG 127
           GP   P +P  P +  GG+     PP    P G         Q+PP PG      PPPPG
Sbjct: 217 GPPPRPGKPEGPPS-QGGNKPQGPPPHPGKPQGPPPQEGNKPQRPPPPGRPQ--GPPPPG 273

Query: 128 AATATGSRHRREPPSPG 144
                G+  +  PP  G
Sbjct: 274 -----GNPQQPLPPPAG 285


>gi|116284398 WAS/WASL interacting protein family, member 1 [Homo
           sapiens]
          Length = 503

 Score = 48.9 bits (115), Expect = 6e-06
 Identities = 42/134 (31%), Positives = 47/134 (35%), Gaps = 15/134 (11%)

Query: 65  TQQPKPSGPSSHPREPPLPGAVTGGSLHFQEPPPLGAATAGSRHRQKP-PSPGSRHRWEP 123
           +Q P P  P S P  PPLP + +G      E P L            P PSPG      P
Sbjct: 304 SQAPPPPPPPSRPGPPPLPPSSSGN----DETPRLPQRNLSLSSSTPPLPSPGRSGPLPP 359

Query: 124 P----PPGAATATGSRHRREPPSPGATTAGSCHLRSSGSTGTRRAPSHPAALQVPYTREG 179
           P    PP        R    PP P  +  GS       S      P  P+   V   R G
Sbjct: 360 PPSERPPPPVRDPPGRSGPLPPPPPVSRNGST------SRALPATPQLPSRSGVDSPRSG 413

Query: 180 PREPTPPAGPQGFA 193
           PR P PP  P   A
Sbjct: 414 PRPPLPPDRPSAGA 427



 Score = 42.0 bits (97), Expect = 8e-04
 Identities = 49/168 (29%), Positives = 63/168 (37%), Gaps = 38/168 (22%)

Query: 57  RPGHTAP--RTQQPKPSGP---SSHPREPPLPG----AVTGGSLH---------FQEPPP 98
           RP  ++P  R   P P GP   S  P  PP PG    A+ GGS+          F   PP
Sbjct: 192 RPIQSSPHNRGSPPVPGGPRQPSPGPTPPPFPGNRGTALGGGSIRQSPLSSSSPFSNRPP 251

Query: 99  LGAATAGSRHRQKPPSP---GSR---HRWEPPPPG---------AATATGSRHRREPPSP 143
           L    + +   + PP P   G+R   HR   PPP          +     +  +  PP P
Sbjct: 252 LPPTPSRALDDKPPPPPPPVGNRPSIHREAVPPPPPQNNKPPVPSTPRPSASSQAPPPPP 311

Query: 144 GATTAGSCHL--RSSGSTGTRRAPSHPAALQ---VPYTREGPREPTPP 186
             +  G   L   SSG+  T R P    +L     P    G   P PP
Sbjct: 312 PPSRPGPPPLPPSSSGNDETPRLPQRNLSLSSSTPPLPSPGRSGPLPP 359



 Score = 40.8 bits (94), Expect = 0.002
 Identities = 35/136 (25%), Positives = 49/136 (36%), Gaps = 12/136 (8%)

Query: 68  PKPSGPSSHPREPPLPGAVTGGSLHFQ---------EPPPLGAATAGSRHRQKPPSPGSR 118
           P PS        PP P      S+H +           PP+ +    S   Q PP P   
Sbjct: 254 PTPSRALDDKPPPPPPPVGNRPSIHREAVPPPPPQNNKPPVPSTPRPSASSQAPPPPPPP 313

Query: 119 HRWEPPPPGAATATGSRHRREPPSPGATTAGSCHLRSSGSTGTRRAPSH---PAALQVPY 175
            R  PPP   +++      R P    + ++ +  L S G +G    P     P  ++ P 
Sbjct: 314 SRPGPPPLPPSSSGNDETPRLPQRNLSLSSSTPPLPSPGRSGPLPPPPSERPPPPVRDPP 373

Query: 176 TREGPREPTPPAGPQG 191
            R GP  P PP    G
Sbjct: 374 GRSGPLPPPPPVSRNG 389



 Score = 40.4 bits (93), Expect = 0.002
 Identities = 42/146 (28%), Positives = 51/146 (34%), Gaps = 16/146 (10%)

Query: 63  PRTQQPKPSGPSSHPR-EPPLPGAVTGGSLHFQEPPPL----GAATAGSRHRQKPPSPGS 117
           P    P+P   S H R  PP+PG     S     PPP     G A  G   RQ P S  S
Sbjct: 186 PVPSTPRPIQSSPHNRGSPPVPGGPRQPSPG-PTPPPFPGNRGTALGGGSIRQSPLSSSS 244

Query: 118 RHRWEPP-PPGAATATGSRHRREPPSPGATTAGSCHLRS-------SGSTGTRRAPSHPA 169
                PP PP  + A     +  PP P      S H  +       +        P   A
Sbjct: 245 PFSNRPPLPPTPSRALDD--KPPPPPPPVGNRPSIHREAVPPPPPQNNKPPVPSTPRPSA 302

Query: 170 ALQVPYTREGPREPTPPAGPQGFAGS 195
           + Q P     P  P PP  P   +G+
Sbjct: 303 SSQAPPPPPPPSRPGPPPLPPSSSGN 328



 Score = 38.1 bits (87), Expect = 0.011
 Identities = 46/164 (28%), Positives = 56/164 (34%), Gaps = 42/164 (25%)

Query: 51  RSTGKRR--PGHTAPRTQQPKPSGPSSHPREPPLPGAVTGGSLHFQEPPPLGAATAGSRH 108
           RST  R    G + P    P     S+ P  PP       G   F  P P         H
Sbjct: 112 RSTANRDNDSGGSRPPLLPPGGRSTSAKPFSPP------SGPGRFPVPSP--------GH 157

Query: 109 RQKPPSPGSRHRWEPPPPGAATATGSRHRREPPSPGATTAGSCHLRSSGSTGTRRAPSHP 168
           R  PP P  R+R  PP P      GS+    PP   +T               R   S P
Sbjct: 158 RSGPPEP-QRNRMPPPRPD----VGSKPDSIPPPVPST--------------PRPIQSSP 198

Query: 169 AALQVPYTREGPREPTPPAGPQGFAGSFCAEGSRRGAEVGWGKL 212
                P    GPR+P+P   P  F G+       RG  +G G +
Sbjct: 199 HNRGSPPVPGGPRQPSPGPTPPPFPGN-------RGTALGGGSI 235


>gi|38373695 WAS/WASL interacting protein family, member 1 [Homo
           sapiens]
          Length = 503

 Score = 48.9 bits (115), Expect = 6e-06
 Identities = 42/134 (31%), Positives = 47/134 (35%), Gaps = 15/134 (11%)

Query: 65  TQQPKPSGPSSHPREPPLPGAVTGGSLHFQEPPPLGAATAGSRHRQKP-PSPGSRHRWEP 123
           +Q P P  P S P  PPLP + +G      E P L            P PSPG      P
Sbjct: 304 SQAPPPPPPPSRPGPPPLPPSSSGN----DETPRLPQRNLSLSSSTPPLPSPGRSGPLPP 359

Query: 124 P----PPGAATATGSRHRREPPSPGATTAGSCHLRSSGSTGTRRAPSHPAALQVPYTREG 179
           P    PP        R    PP P  +  GS       S      P  P+   V   R G
Sbjct: 360 PPSERPPPPVRDPPGRSGPLPPPPPVSRNGST------SRALPATPQLPSRSGVDSPRSG 413

Query: 180 PREPTPPAGPQGFA 193
           PR P PP  P   A
Sbjct: 414 PRPPLPPDRPSAGA 427



 Score = 42.0 bits (97), Expect = 8e-04
 Identities = 49/168 (29%), Positives = 63/168 (37%), Gaps = 38/168 (22%)

Query: 57  RPGHTAP--RTQQPKPSGP---SSHPREPPLPG----AVTGGSLH---------FQEPPP 98
           RP  ++P  R   P P GP   S  P  PP PG    A+ GGS+          F   PP
Sbjct: 192 RPIQSSPHNRGSPPVPGGPRQPSPGPTPPPFPGNRGTALGGGSIRQSPLSSSSPFSNRPP 251

Query: 99  LGAATAGSRHRQKPPSP---GSR---HRWEPPPPG---------AATATGSRHRREPPSP 143
           L    + +   + PP P   G+R   HR   PPP          +     +  +  PP P
Sbjct: 252 LPPTPSRALDDKPPPPPPPVGNRPSIHREAVPPPPPQNNKPPVPSTPRPSASSQAPPPPP 311

Query: 144 GATTAGSCHL--RSSGSTGTRRAPSHPAALQ---VPYTREGPREPTPP 186
             +  G   L   SSG+  T R P    +L     P    G   P PP
Sbjct: 312 PPSRPGPPPLPPSSSGNDETPRLPQRNLSLSSSTPPLPSPGRSGPLPP 359



 Score = 40.8 bits (94), Expect = 0.002
 Identities = 35/136 (25%), Positives = 49/136 (36%), Gaps = 12/136 (8%)

Query: 68  PKPSGPSSHPREPPLPGAVTGGSLHFQ---------EPPPLGAATAGSRHRQKPPSPGSR 118
           P PS        PP P      S+H +           PP+ +    S   Q PP P   
Sbjct: 254 PTPSRALDDKPPPPPPPVGNRPSIHREAVPPPPPQNNKPPVPSTPRPSASSQAPPPPPPP 313

Query: 119 HRWEPPPPGAATATGSRHRREPPSPGATTAGSCHLRSSGSTGTRRAPSH---PAALQVPY 175
            R  PPP   +++      R P    + ++ +  L S G +G    P     P  ++ P 
Sbjct: 314 SRPGPPPLPPSSSGNDETPRLPQRNLSLSSSTPPLPSPGRSGPLPPPPSERPPPPVRDPP 373

Query: 176 TREGPREPTPPAGPQG 191
            R GP  P PP    G
Sbjct: 374 GRSGPLPPPPPVSRNG 389



 Score = 40.4 bits (93), Expect = 0.002
 Identities = 42/146 (28%), Positives = 51/146 (34%), Gaps = 16/146 (10%)

Query: 63  PRTQQPKPSGPSSHPR-EPPLPGAVTGGSLHFQEPPPL----GAATAGSRHRQKPPSPGS 117
           P    P+P   S H R  PP+PG     S     PPP     G A  G   RQ P S  S
Sbjct: 186 PVPSTPRPIQSSPHNRGSPPVPGGPRQPSPG-PTPPPFPGNRGTALGGGSIRQSPLSSSS 244

Query: 118 RHRWEPP-PPGAATATGSRHRREPPSPGATTAGSCHLRS-------SGSTGTRRAPSHPA 169
                PP PP  + A     +  PP P      S H  +       +        P   A
Sbjct: 245 PFSNRPPLPPTPSRALDD--KPPPPPPPVGNRPSIHREAVPPPPPQNNKPPVPSTPRPSA 302

Query: 170 ALQVPYTREGPREPTPPAGPQGFAGS 195
           + Q P     P  P PP  P   +G+
Sbjct: 303 SSQAPPPPPPPSRPGPPPLPPSSSGN 328



 Score = 38.1 bits (87), Expect = 0.011
 Identities = 46/164 (28%), Positives = 56/164 (34%), Gaps = 42/164 (25%)

Query: 51  RSTGKRR--PGHTAPRTQQPKPSGPSSHPREPPLPGAVTGGSLHFQEPPPLGAATAGSRH 108
           RST  R    G + P    P     S+ P  PP       G   F  P P         H
Sbjct: 112 RSTANRDNDSGGSRPPLLPPGGRSTSAKPFSPP------SGPGRFPVPSP--------GH 157

Query: 109 RQKPPSPGSRHRWEPPPPGAATATGSRHRREPPSPGATTAGSCHLRSSGSTGTRRAPSHP 168
           R  PP P  R+R  PP P      GS+    PP   +T               R   S P
Sbjct: 158 RSGPPEP-QRNRMPPPRPD----VGSKPDSIPPPVPST--------------PRPIQSSP 198

Query: 169 AALQVPYTREGPREPTPPAGPQGFAGSFCAEGSRRGAEVGWGKL 212
                P    GPR+P+P   P  F G+       RG  +G G +
Sbjct: 199 HNRGSPPVPGGPRQPSPGPTPPPFPGN-------RGTALGGGSI 235


>gi|209571537 proline-rich protein BstNI subfamily 2 [Homo sapiens]
          Length = 416

 Score = 48.5 bits (114), Expect = 8e-06
 Identities = 44/136 (32%), Positives = 54/136 (39%), Gaps = 23/136 (16%)

Query: 64  RTQQPKPSGPSSHPREPPLPGAVTGG-------SLHFQEPP--PLGAATAGSRHRQKPPS 114
           + Q P P G  + P+ PP PG   G        S   + PP  P G    G    Q PP 
Sbjct: 262 KPQGPPPQG-GNKPQGPPPPGKPQGPPPQGGSKSRSSRSPPGKPQGPPPQGGNQPQGPPP 320

Query: 115 PGSRHRWEPPPPGAATATGSRHRREPPSPGATTAGSCHLRSSGSTGTRRAPSHPAALQVP 174
           P  + +  PPP G     G      PP PG            G + +R A S P   Q P
Sbjct: 321 PPGKPQ-GPPPQGGNKPQG------PPPPGKPQGPP----PQGGSKSRSARSPPGKPQGP 369

Query: 175 YTREG--PREPTPPAG 188
             +EG  P+ P PPAG
Sbjct: 370 PQQEGNNPQGPPPPAG 385



 Score = 48.1 bits (113), Expect = 1e-05
 Identities = 43/135 (31%), Positives = 48/135 (35%), Gaps = 17/135 (12%)

Query: 62  APRTQQPKPSGPSSHPREPPLPGAVTGGSLHFQEPP---PLGAATAGSRHRQKPPSPGSR 118
           AP     KP GP S P +P  P    G       PP   P G    G    Q PP PG  
Sbjct: 39  APPQGGNKPQGPPSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGNKPQGPPPPGKP 98

Query: 119 HRWEPPPPGAATATGSRHRREPPSPGATTAGSCHLRSSGSTGTRRAPSHPAALQVPYTRE 178
               PPP G  +       R P SP     G       G    +  P  P   Q P  + 
Sbjct: 99  Q--GPPPQGDKS-------RSPRSPPGKPQGP---PPQGGNQPQGPPPPPGKPQGPPPQG 146

Query: 179 G--PREPTPPAGPQG 191
           G  P+ P PP  PQG
Sbjct: 147 GNKPQGPPPPGKPQG 161



 Score = 47.8 bits (112), Expect = 1e-05
 Identities = 45/156 (28%), Positives = 58/156 (37%), Gaps = 36/156 (23%)

Query: 64  RTQQPKPSGPSSHPREPPLPGAVTGGSLHFQEPPPLG------AATAGSRHRQKPPSPGS 117
           + Q P P G  + P+ PP PG   G       PPP G      A +   + +  PP  G+
Sbjct: 200 KPQGPPPQG-GNKPQGPPPPGKPQG-------PPPQGDNKSQSARSPPGKPQGPPPQGGN 251

Query: 118 RHRWEPPPPGAATAT---GSRHRREPPSPGATTA----GSCHLRSS-------------G 157
           + +  PPPPG        G    + PP PG        G    RSS             G
Sbjct: 252 QPQGPPPPPGKPQGPPPQGGNKPQGPPPPGKPQGPPPQGGSKSRSSRSPPGKPQGPPPQG 311

Query: 158 STGTRRAPSHPAALQVPYTREG--PREPTPPAGPQG 191
               +  P  P   Q P  + G  P+ P PP  PQG
Sbjct: 312 GNQPQGPPPPPGKPQGPPPQGGNKPQGPPPPGKPQG 347



 Score = 47.0 bits (110), Expect = 2e-05
 Identities = 45/161 (27%), Positives = 59/161 (36%), Gaps = 29/161 (18%)

Query: 56  RRPGHTAPRTQQPKPSGPSSHPREPPLPGAVTG----GSLHFQEPPPLG----------- 100
           R P     + Q P P G +     PP PG   G    G    Q PPP G           
Sbjct: 109 RSPRSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGNKPQGPPPPGKPQGPPPQGDN 168

Query: 101 ----AATAGSRHRQKPPSPGSRHRWEPPPPG---AATATGSRHRREPPSPGATTAGSCHL 153
               + +   + +  PP  G++ +  PPPPG        G    + PP PG         
Sbjct: 169 KSRSSRSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGNKPQGPPPPGKPQGPP--- 225

Query: 154 RSSGSTGTRRAPSHPAALQVPYTREG--PREPTPPAG-PQG 191
              G   ++ A S P   Q P  + G  P+ P PP G PQG
Sbjct: 226 -PQGDNKSQSARSPPGKPQGPPPQGGNQPQGPPPPPGKPQG 265



 Score = 41.6 bits (96), Expect = 0.001
 Identities = 36/137 (26%), Positives = 47/137 (34%), Gaps = 19/137 (13%)

Query: 55  KRRPGHTAP-RTQQPKPSGPSSHPREPPLPGAVTG----GSLHFQEPPPLGAATAGSRHR 109
           K R   + P + Q P P G +     PP PG   G    G    Q PPP G      + +
Sbjct: 293 KSRSSRSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGNKPQGPPPPG------KPQ 346

Query: 110 QKPPSPGSRHRWEPPPPGAATATGSRHRREPPSPGATTAGSCHLRSSGSTGTRRAPSHPA 169
             PP  GS+ R    PPG       +    P  P     G+     +   G  + P  P 
Sbjct: 347 GPPPQGGSKSRSARSPPGKPQGPPQQEGNNPQGPPPPAGGNPQQPQAPPAGQPQGPPRPP 406

Query: 170 ALQVPYTREGPREPTPP 186
                   +G R   PP
Sbjct: 407 --------QGGRPSRPP 415



 Score = 37.4 bits (85), Expect = 0.019
 Identities = 33/109 (30%), Positives = 39/109 (35%), Gaps = 18/109 (16%)

Query: 98  PLGAATAGSRHRQKPPSP-----------GSRHRWEPPPPG---AATATGSRHRREPPSP 143
           P GA   G    Q PPSP           G++ +  PPPPG        G    + PP P
Sbjct: 36  PQGAPPQGGNKPQGPPSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGNKPQGPPPP 95

Query: 144 GATTAGSCHLRSSGSTGTRRAPSHPAALQVPYTREGPREPTPPAG-PQG 191
           G         +   S   R  P  P     P     P+ P PP G PQG
Sbjct: 96  GKPQGPP--PQGDKSRSPRSPPGKPQG-PPPQGGNQPQGPPPPPGKPQG 141


>gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens]
          Length = 1464

 Score = 47.8 bits (112), Expect = 1e-05
 Identities = 75/254 (29%), Positives = 90/254 (35%), Gaps = 67/254 (26%)

Query: 47  RGLCRSTGKRRPGHTAPR--------TQQPKPSGPSSHPREPPLPGAVTGGSLHFQEPPP 98
           RGL    G  RPG   P         T    P GP+     P  PGAV            
Sbjct: 304 RGLPGERG--RPGAPGPAGARGNDGATGAAGPPGPTGPAGPPGFPGAVGAKG-------- 353

Query: 99  LGAATAGSRHRQKPPSPGSRHRWEPPPPGAATATG-SRHRREPPSPGATTAGSCHLRSSG 157
             A   G R  + P       R EP PPG A A G + +      PGA  A       +G
Sbjct: 354 -EAGPQGPRGSEGPQGV----RGEPGPPGPAGAAGPAGNPGADGQPGAKGA-------NG 401

Query: 158 STGTRRAPSHPAALQVPYTREGPREPTPPAGPQGFAGSFCAEGSRRGAEVGWGKLEPQGT 217
           + G   AP  P A        GP+ P  P GP+G +G   A GS+   + G  K EP   
Sbjct: 402 APGIAGAPGFPGARGP----SGPQGPGGPPGPKGNSGEPGAPGSK--GDTG-AKGEP--- 451

Query: 218 RRTGSLGVDSSPLSETLGPAQCGSGRRRACSVLHHHCDGIRFRDCHCAPSACPGPTQDPQ 277
              G +GV   P     GPA    G+R A                   P+  PGP   P 
Sbjct: 452 ---GPVGVQGPP-----GPAG-EEGKRGARG--------------EPGPTGLPGP---PG 485

Query: 278 AGLCTGQEGYPGTD 291
                G  G+PG D
Sbjct: 486 ERGGPGSRGFPGAD 499



 Score = 47.4 bits (111), Expect = 2e-05
 Identities = 53/179 (29%), Positives = 60/179 (33%), Gaps = 32/179 (17%)

Query: 68  PKPSGPSSHPREPPLPGAVTGGSLHFQEPPPLGAATAGSRHRQKPPSPGSRHRWEPPP-- 125
           P P G    P EP  PGA   G +  + PP             KP  PG R    P    
Sbjct: 196 PGPQGFQGPPGEPGEPGA--SGPMGPRGPPGPPGKNGDDGEAGKPGRPGERGPPGPQGAR 253

Query: 126 --PGAATATGSRHRR-------------------EPPSPGATTAGSCHLRSSGSTGTRRA 164
             PG A   G +  R                   EP SPG   A    +   G  G R  
Sbjct: 254 GLPGTAGLPGMKGHRGFSGLDGAKGDAGPAGPKGEPGSPGENGAPG-QMGPRGLPGERGR 312

Query: 165 PSHPAALQVPYT-----REGPREPTPPAGPQGFAGSFCAEGSRRGAEVGWGKLEPQGTR 218
           P  P               GP  PT PAGP GF G+  A+G   G +   G   PQG R
Sbjct: 313 PGAPGPAGARGNDGATGAAGPPGPTGPAGPPGFPGAVGAKG-EAGPQGPRGSEGPQGVR 370



 Score = 42.7 bits (99), Expect = 4e-04
 Identities = 43/155 (27%), Positives = 53/155 (34%), Gaps = 13/155 (8%)

Query: 47  RGLCRSTGKRRPGHTAPRTQQPKPSGPSSHPREPPLPG-AVTGGSLHFQEPPPLGAATAG 105
           RG   + G   P   A     P P+GP   P E   PG A   G+      P     + G
Sbjct: 493 RGFPGADGVAGPKGPAGERGSPGPAGPKGSPGEAGRPGEAGLPGAKGLTGSP----GSPG 548

Query: 106 SRHRQKPPSPGSRHRWEPPPPGAATATGSRHRREPPSPGATTAGSCHLRSSGSTGTRRAP 165
              +  PP P  +    P PPG   A G       P P             G  G R  P
Sbjct: 549 PDGKTGPPGPAGQD-GRPGPPGPPGARGQAGVMGFPGPKGAAG------EPGKAGERGVP 601

Query: 166 SHPAALQVPYTREGPREPTPPAGPQGFAGSFCAEG 200
             P A+  P  ++G      P GP G AG    +G
Sbjct: 602 GPPGAVG-PAGKDGEAGAQGPPGPAGPAGERGEQG 635



 Score = 41.6 bits (96), Expect = 0.001
 Identities = 48/153 (31%), Positives = 53/153 (34%), Gaps = 17/153 (11%)

Query: 58   PGHTAPRTQQPKPSGPSSHPREPPLPGAVTGGSLHFQEPPPLGAATAGSRHRQKPPSPGS 117
            PG  A R   P PSG ++ P  PP P    GG     E  P G    G      PP P  
Sbjct: 877  PG-AAGRVGPPGPSG-NAGPPGPPGPAGKEGGKGPRGETGPAGRP--GEVGPPGPPGPAG 932

Query: 118  RHRWEPPPPGAATATGSRHRREPPSPGATTAGSCHLRSSGSTGTRRAPSHPA-----ALQ 172
              +  P   G A A G+      P P         +   G  G R  P  P        Q
Sbjct: 933  E-KGSPGADGPAGAPGT------PGPQGIAGQRGVVGLPGQRGERGFPGLPGPSGEPGKQ 985

Query: 173  VPYTREGPREPTPPAGPQGFAGSFCAEGSRRGA 205
             P    G R P  P GP G AG    E  R GA
Sbjct: 986  GPSGASGERGPPGPMGPPGLAGP-PGESGREGA 1017



 Score = 41.2 bits (95), Expect = 0.001
 Identities = 54/207 (26%), Positives = 67/207 (32%), Gaps = 42/207 (20%)

Query: 97  PPLGAATAGSRHRQKPPSPGSRHRWEPPPPGAATATGSRHRREPPSPGATTAGSCHLRSS 156
           PP  A   G +    P  P         P GA  A G R    PP P           + 
Sbjct: 771 PPGPAGAPGDKGESGPSGPAG-------PTGARGAPGDRGEPGPPGPAGFAGPP---GAD 820

Query: 157 GSTGTRRAPSHPAALQVPYTREGPREPTPPAGPQGFAGSFCAEGSR-----------RGA 205
           G  G +  P    A        GP  P  PAGP G  G+  A G++            G 
Sbjct: 821 GQPGAKGEPGDAGAKG----DAGPPGPAGPAGPPGPIGNVGAPGAKGARGSAGPPGATGF 876

Query: 206 EVGWGKLEPQGTRRTGSLGVDSSPLSETLGPA--QCGSGRRRACSVLHHHCDGIRFRDCH 263
               G++ P G   +G+ G    P     GPA  + G G R           G   R   
Sbjct: 877 PGAAGRVGPPGP--SGNAGPPGPP-----GPAGKEGGKGPRGE--------TGPAGRPGE 921

Query: 264 CAPSACPGPTQDPQAGLCTGQEGYPGT 290
             P   PGP  +  +    G  G PGT
Sbjct: 922 VGPPGPPGPAGEKGSPGADGPAGAPGT 948



 Score = 41.2 bits (95), Expect = 0.001
 Identities = 66/238 (27%), Positives = 82/238 (34%), Gaps = 22/238 (9%)

Query: 48   GLCRSTGKRR-PGHTAPRTQQPKPSGPSSHPREPPLPGAVTGGSLHFQEPPPLGAATAGS 106
            GL    G+R  PG   P + +P   GPS    E   PG +         PP L      S
Sbjct: 962  GLPGQRGERGFPGLPGP-SGEPGKQGPSGASGERGPPGPMG--------PPGLAGPPGES 1012

Query: 107  RHRQKPPSPGSRHRWEPPPPGAATATGSRHRREPP-SPGATTAGSCHLRSSGSTGTRRAP 165
                 P + GS  R     PGA    G      PP +PGA  A    +  +G +G R   
Sbjct: 1013 GREGAPGAEGSPGR--DGSPGAKGDRGETGPAGPPGAPGAPGAPG-PVGPAGKSGDR-GE 1068

Query: 166  SHPAALQVPYTREGPREPTPPAGPQGFAGSFCAEGSR-----RGAEVGWGKLEPQGTRRT 220
            + PA    P    G R P  P GP+G  G    +G R     RG     G   P G+   
Sbjct: 1069 TGPAGPAGPVGPVGARGPAGPQGPRGDKGETGEQGDRGIKGHRGFSGLQGPPGPPGSPGE 1128

Query: 221  GSLGVDSSPLSETLGPAQCGSGRRRACSVLHHHC--DGIRFRDCHCAPSACPGPTQDP 276
                  S P      P   G+  +   + L       G R R     P   PGP   P
Sbjct: 1129 QGPSGASGPAGPRGPPGSAGAPGKDGLNGLPGPIGPPGPRGRTGDAGPVGPPGPPGPP 1186



 Score = 35.8 bits (81), Expect = 0.055
 Identities = 68/274 (24%), Positives = 80/274 (29%), Gaps = 62/274 (22%)

Query: 58  PGHTAPRTQQPK--PSGPSSHPREPPLPGAVTGGSLHFQEPPPLG-------AATAGSRH 108
           PG   P   Q    P GP  +  EP  PG+  G +    EP P+G       A   G R 
Sbjct: 412 PGARGPSGPQGPGGPPGPKGNSGEPGAPGS-KGDTGAKGEPGPVGVQGPPGPAGEEGKRG 470

Query: 109 RQKPPSP-----------GSRHRWEPPPPGAATATGSRHRREPPSPGATTAGSCHLRSSG 157
            +  P P           G   R  P   G A   G    R  P P             G
Sbjct: 471 ARGEPGPTGLPGPPGERGGPGSRGFPGADGVAGPKGPAGERGSPGPAGPKGSPGEAGRPG 530

Query: 158 STGTRRA-----------PSHPAALQVPYTREG-PREPTPP-----AGPQGFAGSFCAEG 200
             G   A           P        P  ++G P  P PP     AG  GF G   A G
Sbjct: 531 EAGLPGAKGLTGSPGSPGPDGKTGPPGPAGQDGRPGPPGPPGARGQAGVMGFPGPKGAAG 590

Query: 201 S-----RRGAEVGWGKLEPQGTRRTGSLGVDSSPLSETLGPAQCGSGRRRACSVLHHHCD 255
                  RG     G + P G  + G  G    P     GPA     R            
Sbjct: 591 EPGKAGERGVPGPPGAVGPAG--KDGEAGAQGPP-----GPAGPAGERGEQGPAGSPGFQ 643

Query: 256 GIRFRDCHCAPSACPGPTQDPQAGLCTGQEGYPG 289
           G+            PGP   P      G++G PG
Sbjct: 644 GL------------PGPAGPPGEAGKPGEQGVPG 665



 Score = 34.7 bits (78), Expect = 0.12
 Identities = 42/148 (28%), Positives = 49/148 (33%), Gaps = 34/148 (22%)

Query: 58  PGHTAPRTQQPKPSGPSSH--PREPPLPGAVTGGSLHFQEPPPLG-AATAGSRHRQKPPS 114
           PG+   +     P  P S   P    +PG      L    P P G    AG +     P 
Sbjct: 703 PGNDGAKGDAGAPGAPGSQGAPGLQGMPGERGAAGL----PGPKGDRGDAGPKGADGSPG 758

Query: 115 PGSRHRWEPP--PPGAATATGSRHRREPPSPGATTAGSCHLRSSGSTGTRRAPSHPAALQ 172
                    P  PPG A A G +    P  P            +G TG R AP       
Sbjct: 759 KDGVRGLTGPIGPPGPAGAPGDKGESGPSGP------------AGPTGARGAPGDRG--- 803

Query: 173 VPYTREGPREPTPPAGPQGFAGSFCAEG 200
                    EP PP GP GFAG   A+G
Sbjct: 804 ---------EPGPP-GPAGFAGPPGADG 821



 Score = 33.1 bits (74), Expect = 0.36
 Identities = 50/191 (26%), Positives = 66/191 (34%), Gaps = 42/191 (21%)

Query: 68  PKPSGPSSHPRE------PPLPGAVTGGSLHFQ---EPPPLGAATAGSRHRQKPP-SPGS 117
           P P G +  P +      P  PGAV       +   + PP  A  AG R  Q P  SPG 
Sbjct: 583 PGPKGAAGEPGKAGERGVPGPPGAVGPAGKDGEAGAQGPPGPAGPAGERGEQGPAGSPGF 642

Query: 118 RHRWEPPPP----------------GAATATGSRHRR---------EPPSPGATTAGSCH 152
           +    P  P                GA   +G+R  R          PP P      +  
Sbjct: 643 QGLPGPAGPPGEAGKPGEQGVPGDLGAPGPSGARGERGFPGERGVQGPPGPAGPRGANGA 702

Query: 153 LRSSGSTGTRRAPSHPAALQVPYTREGPREP-----TPPAGPQGFAGSFCAEGS--RRGA 205
             + G+ G   AP  P +   P  +  P E        P G +G AG   A+GS  + G 
Sbjct: 703 PGNDGAKGDAGAPGAPGSQGAPGLQGMPGERGAAGLPGPKGDRGDAGPKGADGSPGKDGV 762

Query: 206 EVGWGKLEPQG 216
               G + P G
Sbjct: 763 RGLTGPIGPPG 773


>gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Homo
           sapiens]
          Length = 1487

 Score = 47.8 bits (112), Expect = 1e-05
 Identities = 60/208 (28%), Positives = 71/208 (34%), Gaps = 43/208 (20%)

Query: 57  RPGHTAPRTQQPKPSGPSSHPREPPLPGAVTGGSLHFQEPPPLGAA--TAGSRHRQKPPS 114
           +PG   P    P P GP+  P  P  PGA         E  P GA         R +P +
Sbjct: 349 QPGPAGP----PGPVGPAGGPGFPGAPGAKG-------EAGPTGARGPEGAQGPRGEPGT 397

Query: 115 PGSRH----------------RWEPPPPGAATATGSRHRREPPSPGATTAGSCHLRSSGS 158
           PGS                  +     PG A A G    R PP P   T     L   G 
Sbjct: 398 PGSPGPAGASGNPGTDGIPGAKGSAGAPGIAGAPGFPGPRGPPGPQGATGP---LGPKGQ 454

Query: 159 TGTRRAPSHPAALQVPYTREGPREPTPPAGPQGFAGSFCAEGSR--RGAEVGWGKLEPQG 216
           TG                 +GP+    PAGPQG  G    EG R  RG   G G + P G
Sbjct: 455 TGEPGIAGFKG-------EQGPKGEPGPAGPQGAPGPAGEEGKRGARGEPGGVGPIGPPG 507

Query: 217 TRRTGSLGVDSSPLSETLGPAQCGSGRR 244
            R  G+ G    P  + L   +   G R
Sbjct: 508 ER--GAPGNRGFPGQDGLAGPKGAPGER 533



 Score = 40.8 bits (94), Expect = 0.002
 Identities = 64/245 (26%), Positives = 75/245 (30%), Gaps = 41/245 (16%)

Query: 68   PKPSGPSSHPREPPLPGAVTGGS-LHFQEPPPLGAATAGSRHRQKPPSPGSRHRWEPP-P 125
            P P GPS  P  P  P  VTG       + PP      G+  R  PP  GS     PP P
Sbjct: 863  PGPQGPSGAPG-PQGPTGVTGPKGARGAQGPPGATGFPGAAGRVGPP--GSNGNPGPPGP 919

Query: 126  PGAATATGSRHRREPPSPGATTAGSCHLRSSGSTGTRRAPSHPAALQVPYTREGPREPTP 185
            PG +   G +  R    P            +G  G +  P            +GP     
Sbjct: 920  PGPSGKDGPKGARGDSGPPGRAGEPGLQGPAGPPGEKGEPGD----------DGPSGAEG 969

Query: 186  PAGPQGFAGSF--------------------CAEGSRRGAEVGWGKLEPQG-TRRTGSLG 224
            P GPQG AG                        E  ++GA    G   P G     G  G
Sbjct: 970  PPGPQGLAGQRGIVGLPGQRGERGFPGLPGPSGEPGKQGAPGASGDRGPPGPVGPPGLTG 1029

Query: 225  VDSSPLSETLGPAQCGSGRRRACSVLHHHCDGIRFRDCHCAPSACPGPTQDPQAGLCTGQ 284
                P  E    A    GR  A  V      G R           PGP   P     TG+
Sbjct: 1030 PAGEPGREGSPGADGPPGRDGAAGV-----KGDRGETGAVGAPGAPGPPGSPGPAGPTGK 1084

Query: 285  EGYPG 289
            +G  G
Sbjct: 1085 QGDRG 1089



 Score = 39.7 bits (91), Expect = 0.004
 Identities = 75/285 (26%), Positives = 96/285 (33%), Gaps = 55/285 (19%)

Query: 41  SETGWFRGLCRSTGKRRPGHTAPRTQQPKPSGPSSHPREPPLPGAVTGGSLHFQEPP-PL 99
           ++ G  +G     G R P   A     P P G   +P EP  PG    G +  + PP P 
Sbjct: 194 AQLGVMQGPMGPMGPRGPPGPAGA---PGPQGFQGNPGEPGEPGV--SGPMGPRGPPGPP 248

Query: 100 G-------AATAGSRHRQKPPSPGSRHRWEPPPPGAATATGSRHRREPPSPGAT-TAGSC 151
           G       A   G    + PP P    R  P  PG     G  HR  P   GA   AG+ 
Sbjct: 249 GKPGDDGEAGKPGKAGERGPPGPQGA-RGFPGTPGLPGVKG--HRGYPGLDGAKGEAGAP 305

Query: 152 HLRS-SGSTGTRRAPSHPAALQVPYTR-----------------EGPREPTPPAGPQGFA 193
            ++  SGS G   +P       +P  R                  GP  P  P GP G  
Sbjct: 306 GVKGESGSPGENGSPGPMGPRGLPGERGRTGPAGAAGARGNDGQPGPAGPPGPVGPAGGP 365

Query: 194 GSFCAEGSR--------RGAEVGWG-KLEPQGTRRTGSLGVDSSPLSETLGPAQCGSGRR 244
           G   A G++        RG E   G + EP      G  G   +P ++ +  A+  +G  
Sbjct: 366 GFPGAPGAKGEAGPTGARGPEGAQGPRGEPGTPGSPGPAGASGNPGTDGIPGAKGSAG-- 423

Query: 245 RACSVLHHHCDGIRFRDCHCAPSACPGPTQDPQAGLCTGQEGYPG 289
                      GI        P   PGP          GQ G PG
Sbjct: 424 ---------APGIAGAPGFPGPRGPPGPQGATGPLGPKGQTGEPG 459



 Score = 39.3 bits (90), Expect = 0.005
 Identities = 45/160 (28%), Positives = 55/160 (34%), Gaps = 32/160 (20%)

Query: 63  PRTQQPK----PSGPSSHPREPPLPGAVTGGSLHFQEPPPLGAATAGSRHRQKPPSPGSR 118
           P T  PK    P+GP      P L G            P       G +  +  P     
Sbjct: 725 PGTDGPKGASGPAGPPGAQGPPGLQGMPGERGAAGIAGPKGDRGDVGEKGPEGAPGKDGG 784

Query: 119 HRWEPP--PPGAATATGSRHRREPPSPGATTAGSCHLRSSGSTGTRRAPSHPAALQVPYT 176
                P  PPG A A G +    PP P            +GS G R AP           
Sbjct: 785 RGLTGPIGPPGPAGANGEKGEVGPPGP------------AGSAGARGAP----------- 821

Query: 177 REGPREPTPPAGPQGFAGSFCAEGSRRGAEVGWGKLEPQG 216
             G R  T P GP GFAG   A+G + GA+   G+   +G
Sbjct: 822 --GERGETGPPGPAGFAGPPGADG-QPGAKGEQGEAGQKG 858



 Score = 38.9 bits (89), Expect = 0.006
 Identities = 55/198 (27%), Positives = 70/198 (35%), Gaps = 29/198 (14%)

Query: 57  RPGHTAPRTQQ--------PKPSGPSSHPR---EPPLPGAVTGGSLHFQEP------PPL 99
           RPG   P+  +        P P G +  P    E  LPGA     L  ++       PP 
Sbjct: 586 RPGPPGPQGARGQPGVMGFPGPKGANGEPGKAGEKGLPGAPGLRGLPGKDGETGAAGPPG 645

Query: 100 GAATAGSRHRQKPPSPGSRHRWEPPPPGAATATGSRHRREPPSPGATTAGSCHLRSSGST 159
            A  AG R  Q  P P S  +  P PPG     G    +  P               G  
Sbjct: 646 PAGPAGERGEQGAPGP-SGFQGLPGPPGPPGEGGKPGDQGVPGEAGAPGLVGPRGERGFP 704

Query: 160 GTRRAP-----SHPAALQVPYTREGPREPTPPAGPQGFAGSFCAEG--SRRGAEVGWGKL 212
           G R +P       P  L      +GP+  + PAGP G  G    +G    RGA    G  
Sbjct: 705 GERGSPGAQGLQGPRGLPGTPGTDGPKGASGPAGPPGAQGPPGLQGMPGERGAA---GIA 761

Query: 213 EPQGTR-RTGSLGVDSSP 229
            P+G R   G  G + +P
Sbjct: 762 GPKGDRGDVGEKGPEGAP 779



 Score = 36.6 bits (83), Expect = 0.032
 Identities = 60/233 (25%), Positives = 72/233 (30%), Gaps = 35/233 (15%)

Query: 68  PKPSGPSSHPREPPLPG----AVTGGSLHFQEPPPLGAATA--GSRHRQKPPSPGSR--- 118
           P P GP   P  P L G     + GG         LG      G    + PP P      
Sbjct: 161 PGPPGPPGPPGPPGLGGNFAAQMAGGFDEKAGGAQLGVMQGPMGPMGPRGPPGPAGAPGP 220

Query: 119 --HRWEPPPPGAATATGSRHRREPPSPGATTAGSCHLRSSGSTGTRRAPSHPAALQVPYT 176
              +  P  PG    +G    R PP P             G  G R  P    A   P T
Sbjct: 221 QGFQGNPGEPGEPGVSGPMGPRGPPGPPGKPGDDGEAGKPGKAGERGPPGPQGARGFPGT 280

Query: 177 REGPREPTPPAGPQGFAGSFCAEGSRRGAEVGWGKLEPQGTRRTGSLGVDSSPLSETLGP 236
              P       G +G+ G   A+G     E G     P     +GS G + SP    +GP
Sbjct: 281 PGLP----GVKGHRGYPGLDGAKG-----EAG----APGVKGESGSPGENGSP--GPMGP 325

Query: 237 AQCGSGRRRACSVLHHHCDGIRFRDCHCAPSACPGPTQDPQAGLCTGQEGYPG 289
                 R R          G R  D    P+  PGP          G  G+PG
Sbjct: 326 RGLPGERGRTGPA---GAAGARGNDGQPGPAGPPGPVGP------AGGPGFPG 369



 Score = 31.6 bits (70), Expect = 1.0
 Identities = 26/89 (29%), Positives = 32/89 (35%), Gaps = 10/89 (11%)

Query: 140 PPSPGATTAGSCHLRSSGSTGTRRAPSHPAALQVPYTREGPREPTPPA--GPQGFAGSFC 197
           PP P             G  G + AP        P T   P  P PP   GP G  G+F 
Sbjct: 121 PPGPQGPAGEQGPRGDRGDKGEKGAPGPRGRDGEPGTPGNPGPPGPPGPPGPPGLGGNFA 180

Query: 198 A------EGSRRGAEVG--WGKLEPQGTR 218
           A      +    GA++G   G + P G R
Sbjct: 181 AQMAGGFDEKAGGAQLGVMQGPMGPMGPR 209



 Score = 28.9 bits (63), Expect = 6.7
 Identities = 46/179 (25%), Positives = 57/179 (31%), Gaps = 50/179 (27%)

Query: 58   PGHTAPRTQQPKPSGPSSHPREPPLPGAVTGGSLHFQEPPPLG-AATAGSRHRQKPPSPG 116
            PG   P    P P+GP+    +    GA            P+G +  AG+R  Q P  P 
Sbjct: 1067 PGAPGP-PGSPGPAGPTGKQGDRGEAGA----------QGPMGPSGPAGARGIQGPQGPR 1115

Query: 117  SRHRWEPPPPGAATATGSRHRREPPSPGATTAGSCHLRSSGSTGTRRAPSHPA-----AL 171
               + E   PG     G R                     G TG +  P  P        
Sbjct: 1116 G-DKGEAGEPGERGLKGHR---------------------GFTGLQGLPGPPGPSGDQGA 1153

Query: 172  QVPYTREGPREPTPPAGPQGFAGSFCAEGSRRGAEVGWGKLEPQGTR-RTGSLGVDSSP 229
              P    GPR P  P GP G          + GA    G + P G R R+G  G    P
Sbjct: 1154 SGPAGPSGPRGPPGPVGPSG----------KDGANGIPGPIGPPGPRGRSGETGPAGPP 1202


>gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Homo
           sapiens]
          Length = 1418

 Score = 47.8 bits (112), Expect = 1e-05
 Identities = 60/208 (28%), Positives = 71/208 (34%), Gaps = 43/208 (20%)

Query: 57  RPGHTAPRTQQPKPSGPSSHPREPPLPGAVTGGSLHFQEPPPLGAA--TAGSRHRQKPPS 114
           +PG   P    P P GP+  P  P  PGA         E  P GA         R +P +
Sbjct: 280 QPGPAGP----PGPVGPAGGPGFPGAPGAKG-------EAGPTGARGPEGAQGPRGEPGT 328

Query: 115 PGSRH----------------RWEPPPPGAATATGSRHRREPPSPGATTAGSCHLRSSGS 158
           PGS                  +     PG A A G    R PP P   T     L   G 
Sbjct: 329 PGSPGPAGASGNPGTDGIPGAKGSAGAPGIAGAPGFPGPRGPPGPQGATGP---LGPKGQ 385

Query: 159 TGTRRAPSHPAALQVPYTREGPREPTPPAGPQGFAGSFCAEGSR--RGAEVGWGKLEPQG 216
           TG                 +GP+    PAGPQG  G    EG R  RG   G G + P G
Sbjct: 386 TGEPGIAGFKG-------EQGPKGEPGPAGPQGAPGPAGEEGKRGARGEPGGVGPIGPPG 438

Query: 217 TRRTGSLGVDSSPLSETLGPAQCGSGRR 244
            R  G+ G    P  + L   +   G R
Sbjct: 439 ER--GAPGNRGFPGQDGLAGPKGAPGER 464



 Score = 40.8 bits (94), Expect = 0.002
 Identities = 64/245 (26%), Positives = 75/245 (30%), Gaps = 41/245 (16%)

Query: 68   PKPSGPSSHPREPPLPGAVTGGS-LHFQEPPPLGAATAGSRHRQKPPSPGSRHRWEPP-P 125
            P P GPS  P  P  P  VTG       + PP      G+  R  PP  GS     PP P
Sbjct: 794  PGPQGPSGAPG-PQGPTGVTGPKGARGAQGPPGATGFPGAAGRVGPP--GSNGNPGPPGP 850

Query: 126  PGAATATGSRHRREPPSPGATTAGSCHLRSSGSTGTRRAPSHPAALQVPYTREGPREPTP 185
            PG +   G +  R    P            +G  G +  P            +GP     
Sbjct: 851  PGPSGKDGPKGARGDSGPPGRAGEPGLQGPAGPPGEKGEPGD----------DGPSGAEG 900

Query: 186  PAGPQGFAGSF--------------------CAEGSRRGAEVGWGKLEPQG-TRRTGSLG 224
            P GPQG AG                        E  ++GA    G   P G     G  G
Sbjct: 901  PPGPQGLAGQRGIVGLPGQRGERGFPGLPGPSGEPGKQGAPGASGDRGPPGPVGPPGLTG 960

Query: 225  VDSSPLSETLGPAQCGSGRRRACSVLHHHCDGIRFRDCHCAPSACPGPTQDPQAGLCTGQ 284
                P  E    A    GR  A  V      G R           PGP   P     TG+
Sbjct: 961  PAGEPGREGSPGADGPPGRDGAAGV-----KGDRGETGAVGAPGAPGPPGSPGPAGPTGK 1015

Query: 285  EGYPG 289
            +G  G
Sbjct: 1016 QGDRG 1020



 Score = 39.7 bits (91), Expect = 0.004
 Identities = 75/285 (26%), Positives = 96/285 (33%), Gaps = 55/285 (19%)

Query: 41  SETGWFRGLCRSTGKRRPGHTAPRTQQPKPSGPSSHPREPPLPGAVTGGSLHFQEPP-PL 99
           ++ G  +G     G R P   A     P P G   +P EP  PG    G +  + PP P 
Sbjct: 125 AQLGVMQGPMGPMGPRGPPGPAGA---PGPQGFQGNPGEPGEPGV--SGPMGPRGPPGPP 179

Query: 100 G-------AATAGSRHRQKPPSPGSRHRWEPPPPGAATATGSRHRREPPSPGAT-TAGSC 151
           G       A   G    + PP P    R  P  PG     G  HR  P   GA   AG+ 
Sbjct: 180 GKPGDDGEAGKPGKAGERGPPGPQGA-RGFPGTPGLPGVKG--HRGYPGLDGAKGEAGAP 236

Query: 152 HLRS-SGSTGTRRAPSHPAALQVPYTR-----------------EGPREPTPPAGPQGFA 193
            ++  SGS G   +P       +P  R                  GP  P  P GP G  
Sbjct: 237 GVKGESGSPGENGSPGPMGPRGLPGERGRTGPAGAAGARGNDGQPGPAGPPGPVGPAGGP 296

Query: 194 GSFCAEGSR--------RGAEVGWG-KLEPQGTRRTGSLGVDSSPLSETLGPAQCGSGRR 244
           G   A G++        RG E   G + EP      G  G   +P ++ +  A+  +G  
Sbjct: 297 GFPGAPGAKGEAGPTGARGPEGAQGPRGEPGTPGSPGPAGASGNPGTDGIPGAKGSAG-- 354

Query: 245 RACSVLHHHCDGIRFRDCHCAPSACPGPTQDPQAGLCTGQEGYPG 289
                      GI        P   PGP          GQ G PG
Sbjct: 355 ---------APGIAGAPGFPGPRGPPGPQGATGPLGPKGQTGEPG 390



 Score = 39.3 bits (90), Expect = 0.005
 Identities = 45/160 (28%), Positives = 55/160 (34%), Gaps = 32/160 (20%)

Query: 63  PRTQQPK----PSGPSSHPREPPLPGAVTGGSLHFQEPPPLGAATAGSRHRQKPPSPGSR 118
           P T  PK    P+GP      P L G            P       G +  +  P     
Sbjct: 656 PGTDGPKGASGPAGPPGAQGPPGLQGMPGERGAAGIAGPKGDRGDVGEKGPEGAPGKDGG 715

Query: 119 HRWEPP--PPGAATATGSRHRREPPSPGATTAGSCHLRSSGSTGTRRAPSHPAALQVPYT 176
                P  PPG A A G +    PP P            +GS G R AP           
Sbjct: 716 RGLTGPIGPPGPAGANGEKGEVGPPGP------------AGSAGARGAP----------- 752

Query: 177 REGPREPTPPAGPQGFAGSFCAEGSRRGAEVGWGKLEPQG 216
             G R  T P GP GFAG   A+G + GA+   G+   +G
Sbjct: 753 --GERGETGPPGPAGFAGPPGADG-QPGAKGEQGEAGQKG 789



 Score = 38.9 bits (89), Expect = 0.006
 Identities = 55/198 (27%), Positives = 70/198 (35%), Gaps = 29/198 (14%)

Query: 57  RPGHTAPRTQQ--------PKPSGPSSHPR---EPPLPGAVTGGSLHFQEP------PPL 99
           RPG   P+  +        P P G +  P    E  LPGA     L  ++       PP 
Sbjct: 517 RPGPPGPQGARGQPGVMGFPGPKGANGEPGKAGEKGLPGAPGLRGLPGKDGETGAAGPPG 576

Query: 100 GAATAGSRHRQKPPSPGSRHRWEPPPPGAATATGSRHRREPPSPGATTAGSCHLRSSGST 159
            A  AG R  Q  P P S  +  P PPG     G    +  P               G  
Sbjct: 577 PAGPAGERGEQGAPGP-SGFQGLPGPPGPPGEGGKPGDQGVPGEAGAPGLVGPRGERGFP 635

Query: 160 GTRRAP-----SHPAALQVPYTREGPREPTPPAGPQGFAGSFCAEG--SRRGAEVGWGKL 212
           G R +P       P  L      +GP+  + PAGP G  G    +G    RGA    G  
Sbjct: 636 GERGSPGAQGLQGPRGLPGTPGTDGPKGASGPAGPPGAQGPPGLQGMPGERGAA---GIA 692

Query: 213 EPQGTR-RTGSLGVDSSP 229
            P+G R   G  G + +P
Sbjct: 693 GPKGDRGDVGEKGPEGAP 710



 Score = 36.6 bits (83), Expect = 0.032
 Identities = 60/233 (25%), Positives = 72/233 (30%), Gaps = 35/233 (15%)

Query: 68  PKPSGPSSHPREPPLPG----AVTGGSLHFQEPPPLGAATA--GSRHRQKPPSPGSR--- 118
           P P GP   P  P L G     + GG         LG      G    + PP P      
Sbjct: 92  PGPPGPPGPPGPPGLGGNFAAQMAGGFDEKAGGAQLGVMQGPMGPMGPRGPPGPAGAPGP 151

Query: 119 --HRWEPPPPGAATATGSRHRREPPSPGATTAGSCHLRSSGSTGTRRAPSHPAALQVPYT 176
              +  P  PG    +G    R PP P             G  G R  P    A   P T
Sbjct: 152 QGFQGNPGEPGEPGVSGPMGPRGPPGPPGKPGDDGEAGKPGKAGERGPPGPQGARGFPGT 211

Query: 177 REGPREPTPPAGPQGFAGSFCAEGSRRGAEVGWGKLEPQGTRRTGSLGVDSSPLSETLGP 236
              P       G +G+ G   A+G     E G     P     +GS G + SP    +GP
Sbjct: 212 PGLP----GVKGHRGYPGLDGAKG-----EAG----APGVKGESGSPGENGSP--GPMGP 256

Query: 237 AQCGSGRRRACSVLHHHCDGIRFRDCHCAPSACPGPTQDPQAGLCTGQEGYPG 289
                 R R          G R  D    P+  PGP          G  G+PG
Sbjct: 257 RGLPGERGRTGPA---GAAGARGNDGQPGPAGPPGPVGP------AGGPGFPG 300



 Score = 31.6 bits (70), Expect = 1.0
 Identities = 26/89 (29%), Positives = 32/89 (35%), Gaps = 10/89 (11%)

Query: 140 PPSPGATTAGSCHLRSSGSTGTRRAPSHPAALQVPYTREGPREPTPPA--GPQGFAGSFC 197
           PP P             G  G + AP        P T   P  P PP   GP G  G+F 
Sbjct: 52  PPGPQGPAGEQGPRGDRGDKGEKGAPGPRGRDGEPGTPGNPGPPGPPGPPGPPGLGGNFA 111

Query: 198 A------EGSRRGAEVG--WGKLEPQGTR 218
           A      +    GA++G   G + P G R
Sbjct: 112 AQMAGGFDEKAGGAQLGVMQGPMGPMGPR 140



 Score = 28.9 bits (63), Expect = 6.7
 Identities = 46/179 (25%), Positives = 57/179 (31%), Gaps = 50/179 (27%)

Query: 58   PGHTAPRTQQPKPSGPSSHPREPPLPGAVTGGSLHFQEPPPLG-AATAGSRHRQKPPSPG 116
            PG   P    P P+GP+    +    GA            P+G +  AG+R  Q P  P 
Sbjct: 998  PGAPGP-PGSPGPAGPTGKQGDRGEAGA----------QGPMGPSGPAGARGIQGPQGPR 1046

Query: 117  SRHRWEPPPPGAATATGSRHRREPPSPGATTAGSCHLRSSGSTGTRRAPSHPA-----AL 171
               + E   PG     G R                     G TG +  P  P        
Sbjct: 1047 G-DKGEAGEPGERGLKGHR---------------------GFTGLQGLPGPPGPSGDQGA 1084

Query: 172  QVPYTREGPREPTPPAGPQGFAGSFCAEGSRRGAEVGWGKLEPQGTR-RTGSLGVDSSP 229
              P    GPR P  P GP G          + GA    G + P G R R+G  G    P
Sbjct: 1085 SGPAGPSGPRGPPGPVGPSG----------KDGANGIPGPIGPPGPRGRSGETGPAGPP 1133


>gi|119829187 alpha 1 type XVII collagen [Homo sapiens]
          Length = 1497

 Score = 47.8 bits (112), Expect = 1e-05
 Identities = 49/166 (29%), Positives = 59/166 (35%), Gaps = 36/166 (21%)

Query: 58   PGHTAPRTQQ----PKPSGPSSHPRE-----PPLPGAVTGGSLHFQEPPPLGAATAGSRH 108
            PG   PR       P P GP   P E     P  PG+    S  F   PP      G + 
Sbjct: 859  PGPPGPRGPPGPSIPGPPGPRGPPGEGLPGPPGPPGSFLSNSETFLSGPPGPPGPPGPKG 918

Query: 109  RQKPPSPGSRHRWEPPPPGAATATGSR---HRREPPSPGATTAGSCHLRSSGSTGTRRAP 165
             Q PP P   H+ E   PG +T+  S    + + PP P             G  G +  P
Sbjct: 919  DQGPPGPRG-HQGEQGLPGFSTSGSSSFGLNLQGPPGPPG---------PQGPKGDKGDP 968

Query: 166  SHPAALQVPYTREGPRE-----------PTPPAGPQGFAGSFCAEG 200
              P AL +P    GP E           P  P GP G  GS  + G
Sbjct: 969  GVPGALGIP---SGPSEGGSSSTMYVSGPPGPPGPPGPPGSISSSG 1011



 Score = 35.4 bits (80), Expect = 0.072
 Identities = 62/239 (25%), Positives = 80/239 (33%), Gaps = 40/239 (16%)

Query: 68  PKPSGPSSHPREPPLPGAVTGGSLHFQEPP--------PLGAATAGSRHRQKPPSPGSRH 119
           P P G    P  P +PG +  G    Q P         P      G R R+ P  P    
Sbjct: 578 PGPKGDRGFPGTPGIPGPL--GHPGPQGPKGQKGSVGDPGMEGPMGQRGREGPMGP---- 631

Query: 120 RWEPPPPGAATATGSRHRREPPSPGATTAGSCHLRSSGSTGTRRAPSHPAALQVPYTREG 179
           R E  PPG+    G R     P P         +   GS+G+                 G
Sbjct: 632 RGEAGPPGSGEK-GERGAAGEPGPHGPPGVPGSVGPKGSSGS----------------PG 674

Query: 180 PREPTPPAGPQGFAGSFCAEGSRRGAEVGWGKLEPQGTR-RTGSLGVDSSPLSETLGPAQ 238
           P+ P  P G QG  G     G  +G +   G   P+G +   G  G+   P    L  A 
Sbjct: 675 PQGPPGPVGLQGLRGEVGLPGV-KGDKGPMGPPGPKGDQGEKGPRGLTGEPGMRGLPGAV 733

Query: 239 CGSGRRRACSVL----HHHCDGIRFRDCHCAPSACPGPTQDP-QAGLC--TGQEGYPGT 290
              G + A        H    G +           PGP+ DP + GL    G +G PGT
Sbjct: 734 GEPGAKGAMGPAGPDGHQGPRGEQGLTGMPGIRGPPGPSGDPGKPGLTGPQGPQGLPGT 792


>gi|41349486 proline-rich protein BstNI subfamily 1 isoform 3
           preproprotein [Homo sapiens]
          Length = 178

 Score = 47.8 bits (112), Expect = 1e-05
 Identities = 43/137 (31%), Positives = 52/137 (37%), Gaps = 24/137 (17%)

Query: 58  PGHTAPRTQQPKPSGPSSHPREPPLPGAVTG----GSLHFQEPPPLGAATAGSRHRQKPP 113
           P   A   Q P P G +     PP PG   G    G    Q PPP G         Q PP
Sbjct: 29  PSLIAGNPQGPSPQGGNKPQGPPPPPGKPQGPPPQGGNKPQGPPPPGKP-------QGPP 81

Query: 114 SPGSRHRWEPPPPGAATATGSRHRREPPSPGATTAGSCHLRSSGSTGTRRAPSHPAALQV 173
             G + R    PPG          + PP  G    G     + G + ++ A S P   Q 
Sbjct: 82  PQGDKSRSPRSPPGKP--------QGPPPQGGKPQGP---PAQGGSKSQSARSPPGKPQG 130

Query: 174 PYTREG--PREPTPPAG 188
           P  +EG  P+ P PPAG
Sbjct: 131 PPQQEGNNPQGPPPPAG 147



 Score = 36.6 bits (83), Expect = 0.032
 Identities = 35/143 (24%), Positives = 49/143 (34%), Gaps = 19/143 (13%)

Query: 54  GKRRPGHTAP--RTQQPKPSGPSSHPREPPLPGAVTGG------SLHFQEPP--PLGAAT 103
           G +  G   P  + Q P P G  + P+ PP PG   G       S   + PP  P G   
Sbjct: 44  GNKPQGPPPPPGKPQGPPPQG-GNKPQGPPPPGKPQGPPPQGDKSRSPRSPPGKPQGPPP 102

Query: 104 AGSRHRQKPPSPGSRHRWEPPPPGAATATGSRHRREPPSPGATTAGSCHLRSSGSTGTRR 163
            G + +  P   GS+ +    PPG       +    P  P     G+     +   G  +
Sbjct: 103 QGGKPQGPPAQGGSKSQSARSPPGKPQGPPQQEGNNPQGPPPPAGGNPQQPQAPPAGQPQ 162

Query: 164 APSHPAALQVPYTREGPREPTPP 186
            P  P         +G R   PP
Sbjct: 163 GPPRPP--------QGGRPSRPP 177


>gi|51702526 Wiskott-Aldrich syndrome gene-like protein [Homo
           sapiens]
          Length = 505

 Score = 47.4 bits (111), Expect = 2e-05
 Identities = 47/149 (31%), Positives = 55/149 (36%), Gaps = 25/149 (16%)

Query: 42  ETGWFRGLCRSTGKRRPGHTAPRTQQPKPSGPSSHPREPPLPGAVTGGSLHFQEPPPLGA 101
           +TG    +     ++ P    P    P P  P  H   PP P A   G+     PPP  A
Sbjct: 261 KTGGVEAVKNELRRQAPPPPPPSRGGPPPPPPPPHNSGPPPPPARGRGA---PPPPPSRA 317

Query: 102 ATAGSRHRQKPPSPGSRHRWEPPPPGAATATGSRHRREPPSPGATTAGSCHLRSSGSTGT 161
            TA       PP P SR     PPP         +R  PP P A       L SS  +G 
Sbjct: 318 PTAA-----PPPPPPSRPSVAVPPP-------PPNRMYPPPPPA-------LPSSAPSGP 358

Query: 162 RRAPSHPAALQV-PYTREGPREPTPPAGP 189
              P  P+ L V P     P  P PP GP
Sbjct: 359 --PPPPPSVLGVGPVAPPPPPPPPPPPGP 385



 Score = 31.6 bits (70), Expect = 1.0
 Identities = 25/89 (28%), Positives = 30/89 (33%), Gaps = 20/89 (22%)

Query: 63  PRTQQPKPSGPSSHPRE--PPLPGAVTGGSLHFQEPPPLGAATAGSRHRQKPPSPGSRHR 120
           P   +P  + P   P    PP P A+   +     PPP      G      PP P     
Sbjct: 325 PPPSRPSVAVPPPPPNRMYPPPPPALPSSAPSGPPPPPPSVLGVGPVAPPPPPPP----- 379

Query: 121 WEPPPPGAATATGSRHRREPPSPGATTAG 149
             PPPPG            PP PG  + G
Sbjct: 380 --PPPPG-----------PPPPPGLPSDG 395


>gi|41349484 proline-rich protein BstNI subfamily 1 isoform 2
           preproprotein [Homo sapiens]
          Length = 198

 Score = 47.4 bits (111), Expect = 2e-05
 Identities = 44/144 (30%), Positives = 55/144 (38%), Gaps = 18/144 (12%)

Query: 58  PGHTAPRTQQPKPSGPSSHPREPPLPGAVTG----GSLHFQEPP----PLGAATAGSRHR 109
           P   A   Q P P G +     PP PG   G    G    Q PP    P G    G + R
Sbjct: 29  PSLIAGNPQGPSPQGGNKPQGPPPPPGKPQGPPPQGGNKPQGPPPPGKPQGPPPQGDKSR 88

Query: 110 QKPPSPGSRHRWEPP---PPGAATATGSRHRREPPSPGATTAGSCHLRSSGSTGTRRAPS 166
             P SP  + +  PP    P      G    + PP PG          + G + ++ A S
Sbjct: 89  -SPRSPPGKPQGPPPQGGKPQGPPPQGGNKPQGPPPPGKPQGPP----AQGGSKSQSARS 143

Query: 167 HPAALQVPYTREG--PREPTPPAG 188
            P   Q P  +EG  P+ P PPAG
Sbjct: 144 PPGKPQGPPQQEGNNPQGPPPPAG 167



 Score = 34.7 bits (78), Expect = 0.12
 Identities = 32/126 (25%), Positives = 43/126 (34%), Gaps = 18/126 (14%)

Query: 62  APRTQQPKPSGPSSHPREPPLPGAVTGGSLHFQEPPPLGAATAGSRHRQKPPSPG-SRHR 120
           +PR+   KP GP     +P  P    G     Q PPP G         Q PP+ G S+ +
Sbjct: 89  SPRSPPGKPQGPPPQGGKPQGPPPQGGNKP--QGPPPPGKP-------QGPPAQGGSKSQ 139

Query: 121 WEPPPPGAATATGSRHRREPPSPGATTAGSCHLRSSGSTGTRRAPSHPAALQVPYTREGP 180
               PPG       +    P  P     G+     +   G  + P  P         +G 
Sbjct: 140 SARSPPGKPQGPPQQEGNNPQGPPPPAGGNPQQPQAPPAGQPQGPPRPP--------QGG 191

Query: 181 REPTPP 186
           R   PP
Sbjct: 192 RPSRPP 197



 Score = 30.8 bits (68), Expect = 1.8
 Identities = 28/96 (29%), Positives = 35/96 (36%), Gaps = 4/96 (4%)

Query: 98  PLGAATAGSRHRQKPPSPGSRHRWEPPPPGAATATGSRHRREPPSPGATTAGSCHLRSSG 157
           P G +  G    Q PP P  + +  PPP G     G     +P  P      S   RS  
Sbjct: 36  PQGPSPQGGNKPQGPPPPPGKPQ-GPPPQGGNKPQGPPPPGKPQGPPPQGDKSRSPRSPP 94

Query: 158 STGTRRAPSHPAALQVPYTREG--PREPTPPAGPQG 191
               +  P      Q P  + G  P+ P PP  PQG
Sbjct: 95  GK-PQGPPPQGGKPQGPPPQGGNKPQGPPPPGKPQG 129


>gi|32140760 collagen, type XXVII, alpha 1 [Homo sapiens]
          Length = 1860

 Score = 46.6 bits (109), Expect = 3e-05
 Identities = 46/159 (28%), Positives = 63/159 (39%), Gaps = 31/159 (19%)

Query: 55  KRRPGHTAPRTQQPKPSGPSSHPREPPLPG-AVTGGSLHFQEPPPLGAATAGSRHRQKP- 112
           +R PG   P     +P  P++   + P+P  A T   +      P  A T  S H+  P 
Sbjct: 427 QRNPGMPRPPPPSTRPLPPTTSSSKKPIPTLARTEAKITSHASKPASART--STHKPPPF 484

Query: 113 --------PSPGSRHRWEPP----PPGAATATGSRHRREPPSPGATTAGS---CHLRSSG 157
                   P+PGS     PP    PP + T+T  R     P+PG+   GS       +S 
Sbjct: 485 TALSSSPAPTPGSTRSTRPPATMVPPTSGTST-PRTAPAVPTPGSAPTGSKKPIGSEASK 543

Query: 158 STGTRRAPSHP-------AALQVPY----TREGPREPTP 185
             G + +P  P       AA  VP     TR  PR+P P
Sbjct: 544 KAGPKSSPRKPVPLRPGKAARDVPLSDLTTRPSPRQPQP 582



 Score = 39.3 bits (90), Expect = 0.005
 Identities = 44/137 (32%), Positives = 50/137 (36%), Gaps = 22/137 (16%)

Query: 68   PKPSGPSSHPREPPLPGAVTGGSLHFQEPPPLGAATAGSRHRQKPPSPGSRHRWEPP-PP 126
            P P G   HP  P       GG     EP P G   +    R  P   G++ R  P  P 
Sbjct: 1023 PGPKGSMGHPGMP-------GGMGTPGEPGPQGPPGS----RGPPGMRGAKGRRGPRGPD 1071

Query: 127  GAATATGSRHRREPPSPGAT--------TAGSC-HLRSSGSTGTRRAPSHPAALQVPYTR 177
            G A   GSR  + PP P            AG   HL S G  G    PS P   +     
Sbjct: 1072 GPAGEQGSRGLKGPPGPQGRPGRPGQQGVAGERGHLGSRGFPGIP-GPSGPPGTKGLPGE 1130

Query: 178  EGPREPTPPAGPQGFAG 194
             GP+ P  P GP G  G
Sbjct: 1131 PGPQGPQGPIGPPGEMG 1147



 Score = 38.9 bits (89), Expect = 0.006
 Identities = 43/180 (23%), Positives = 65/180 (36%), Gaps = 39/180 (21%)

Query: 63  PRTQQPKPSGPSS--------HPREPPLPGAVTGGSLHFQEPPPLGAATAGSRHRQKPPS 114
           P++   KPS PS+        HP +   P + T  +L  Q+  P  +    +R  +    
Sbjct: 365 PKSLPTKPSAPSTSIVPIKSPHPTQKTAPSSFTKSALPTQKQVPPTSRPVPARVSRPAEK 424

Query: 115 PGSRHRWEPPPPGAATA----TGSRHRREPPSPGATTA---GSCHLRSSGSTGTRRAP-- 165
           P  R+   P PP  +T     T S  ++  P+   T A         +S  T T + P  
Sbjct: 425 PIQRNPGMPRPPPPSTRPLPPTTSSSKKPIPTLARTEAKITSHASKPASARTSTHKPPPF 484

Query: 166 ----------------SHPAALQVPYT------REGPREPTPPAGPQGFAGSFCAEGSRR 203
                           + P A  VP T      R  P  PTP + P G      +E S++
Sbjct: 485 TALSSSPAPTPGSTRSTRPPATMVPPTSGTSTPRTAPAVPTPGSAPTGSKKPIGSEASKK 544



 Score = 38.5 bits (88), Expect = 0.008
 Identities = 64/252 (25%), Positives = 84/252 (33%), Gaps = 52/252 (20%)

Query: 53  TGKRRPGHTAPRTQQPKPSGPSSHPREP-PL-PGAVTGGSLHFQEPPPLGAATAGSRHRQ 110
           TG ++P      ++  K +GP S PR+P PL PG             PL   T     RQ
Sbjct: 531 TGSKKP----IGSEASKKAGPKSSPRKPVPLRPGKAA-------RDVPLSDLTTRPSPRQ 579

Query: 111 KPPSPGSRHRWEPPPPGAATATGSRHRREPPSPGATTAGSCHLRSS-------------G 157
             PS       +   P    A  ++     P P ++     HL  S             G
Sbjct: 580 PQPS-------QQTTPALVLAP-AQFLSSSPRPTSSGYSIFHLAGSTPFPLLMGPPGPKG 631

Query: 158 STGTRRAPSHPAALQVPYTREGPREPTPPAGPQGFAGSFCAEGSRRGAEVGWGKLEPQGT 217
             G    P  P    +P  R GPR P  P G  G  G   A+G +    +  GK      
Sbjct: 632 DCGLPGPPGLPGLPGIPGAR-GPRGPPGPYGNPGLPGPPGAKGQKGDPGLSPGKAHDGAK 690

Query: 218 RRTGSLGVDSSPLSETLGPAQCGSGRRRACSVLHHHCDGIRFRDCHCAPSACPGPTQDPQ 277
              G  G+  +P     GP     GR+           G      H      PGP   P 
Sbjct: 691 GDMGLPGLSGNP-----GP----PGRKGH--------KGYPGPAGHPGEQGQPGPEGSPG 733

Query: 278 AGLCTGQEGYPG 289
           A    G++G PG
Sbjct: 734 AKGYPGRQGLPG 745



 Score = 32.0 bits (71), Expect = 0.79
 Identities = 23/77 (29%), Positives = 25/77 (32%), Gaps = 8/77 (10%)

Query: 126  PGAATATGSRHRREPPSPGATTAGSCHLRSSGSTGTRRAPSH--------PAALQVPYTR 177
            PG     G R    PP          H    G  GT   P          P  ++    R
Sbjct: 1005 PGIVGEKGDRGMMGPPGVPGPKGSMGHPGMPGGMGTPGEPGPQGPPGSRGPPGMRGAKGR 1064

Query: 178  EGPREPTPPAGPQGFAG 194
             GPR P  PAG QG  G
Sbjct: 1065 RGPRGPDGPAGEQGSRG 1081



 Score = 30.4 bits (67), Expect = 2.3
 Identities = 47/182 (25%), Positives = 58/182 (31%), Gaps = 23/182 (12%)

Query: 58   PGHTAPRTQQPKPSGPSSHPREPPLPGAVTGGSLHFQEPP-----PLGAATAGSRHRQ-K 111
            PG    +  Q  P  P +  +  PL      GS+ F  PP     P      G    +  
Sbjct: 867  PGFQGDKGSQGLPGFPGARGKPGPLGKVGDKGSIGFPGPPGPEGFPGDIGPPGDNGPEGM 926

Query: 112  PPSPGSRHRWEPPPPGAATATGSRHRREPP-SPGATTAGSCHLRSSGSTGTRRAPSHPAA 170
               PG+R    P P G     G      PP +PG            G  G +  P  P  
Sbjct: 927  KGKPGARGL--PGPRGQLGPEGDEGPMGPPGAPGL----------EGQPGRKGFPGRPGL 974

Query: 171  LQVPYTREGPREPTPPAGPQGFAG--SFCAEGSRRGAEVGWGKLEPQGT-RRTGSLGVDS 227
              V      P  P  P G QGF G      E    G +   G + P G     GS+G   
Sbjct: 975  DGVKGEPGDPGRP-GPVGEQGFMGFIGLVGEPGIVGEKGDRGMMGPPGVPGPKGSMGHPG 1033

Query: 228  SP 229
             P
Sbjct: 1034 MP 1035


>gi|4826998 splicing factor proline/glutamine rich (polypyrimidine
           tract binding protein associated) [Homo sapiens]
          Length = 707

 Score = 46.6 bits (109), Expect = 3e-05
 Identities = 43/151 (28%), Positives = 63/151 (41%), Gaps = 24/151 (15%)

Query: 55  KRRPGHTAPRTQQPKPSGPSSHP-----REPPLPGAVTGGSLHFQEPPPL-GAATAGSRH 108
           +++P    P  QQP P  P  HP     ++PP P   +   +  Q P P  G  +A    
Sbjct: 69  QQQPPPQQPPPQQPPPHQPPPHPQPHQQQQPPPPPQDSSKPVVAQGPGPAPGVGSAPPAS 128

Query: 109 RQKPPS--------PGSRHRWEPPPPGAATATGSRHRREPPSPGATTAGSCHLRSSGSTG 160
              PP+        PGS     P PP A T+  +     PP+P ++   +   ++ G   
Sbjct: 129 SSAPPATPPTSGAPPGSGPGPTPTPPPAVTS--APPGAPPPTPPSSGVPTTPPQAGG--- 183

Query: 161 TRRAPSHPAALQVPYTREGPREPTPPAGPQG 191
               P  PAA  VP    GP++   P GP+G
Sbjct: 184 ---PPPPPAA--VPGPGPGPKQGPGPGGPKG 209



 Score = 43.9 bits (102), Expect = 2e-04
 Identities = 54/211 (25%), Positives = 65/211 (30%), Gaps = 27/211 (12%)

Query: 58  PGHTAPRTQQPKPSGPSSHPREPPLPGAVTGGSLHFQEPPPLGAATAGSRHRQKPPSPGS 117
           PG    + + P   GP     +PP+P          Q+PPP           Q PP P  
Sbjct: 36  PGMGLNQNRGPMGPGPGQSGPKPPIPPPPPHQQQ--QQPPPQQPPPQQPPPHQPPPHPQP 93

Query: 118 RHRWEPPP-------------PGAATATGSRHRREPPSPGATTAGSCHLRSSGSTGTRRA 164
             + +PPP             PG A   GS       +P AT   S     SG   T   
Sbjct: 94  HQQQQPPPPPQDSSKPVVAQGPGPAPGVGSAPPASSSAPPATPPTSGAPPGSGPGPTPTP 153

Query: 165 PSHPAALQVPYTREGPREP------TPPAGPQGFAGSFCAEGSRRGAEVGWGKLEPQGTR 218
           P  PA    P     P  P      TPP             G   G + G G   P+G +
Sbjct: 154 P--PAVTSAPPGAPPPTPPSSGVPTTPPQAGGPPPPPAAVPGPGPGPKQGPGPGGPKGGK 211

Query: 219 RTGSLGVDSSPLSETLG----PAQCGSGRRR 245
             G       P   T G    P   G G  R
Sbjct: 212 MPGGPKPGGGPGLSTPGGHPKPPHRGGGEPR 242



 Score = 28.9 bits (63), Expect = 6.7
 Identities = 41/189 (21%), Positives = 58/189 (30%), Gaps = 27/189 (14%)

Query: 61  TAPRTQQPKPS-----GPSSHPREPPLPGAVTGGSLHFQEPPPLGAATAGSRHRQKPPSP 115
           T P+   P P      GP   P++ P PG   GG +     P  G   +      KPP  
Sbjct: 177 TPPQAGGPPPPPAAVPGPGPGPKQGPGPGGPKGGKMPGGPKPGGGPGLSTPGGHPKPPHR 236

Query: 116 GS--------------RHRWEPPPPGAATATGSRHRREPPSPGATTAGSCHLRSSGSTGT 161
           G               +   + PPPG     G    +   S G     S   R    T T
Sbjct: 237 GGGEPRGGRQHHPPYHQQHHQGPPPGG--PGGRSEEKISDSEGFKANLSLLRRPGEKTYT 294

Query: 162 RRAPSHPAALQVPYTREGPREPTPPAGPQGFAGSFCAEGSRRGAEVGWGKLEPQGTRRTG 221
           +R       L    T +  +      G  G           +G   G+ KLE +      
Sbjct: 295 QRCRLFVGNLPADITEDEFKRLFAKYGEPG------EVFINKGKGFGFIKLESRALAEIA 348

Query: 222 SLGVDSSPL 230
              +D +P+
Sbjct: 349 KAELDDTPM 357


>gi|163965366 nascent polypeptide-associated complex alpha subunit
            isoform a [Homo sapiens]
          Length = 2078

 Score = 46.6 bits (109), Expect = 3e-05
 Identities = 49/169 (28%), Positives = 59/169 (34%), Gaps = 22/169 (13%)

Query: 62   APRTQQPKPSGPSSHPREPPLPGAVTGGSLHFQEPPPLGAATAGSRHR-------QKPPS 114
            AP T    P  P   P  PP  GA T  +     PP L    A   H+         PPS
Sbjct: 1240 APTTPAATPPSPKGGPATPPPKGAPTPPA---ATPPSLKGGLATPPHKGAPNPAVVTPPS 1296

Query: 115  PGSRHRWEPP-----PPGAATATGSRHRREPPSPGATTAGSCHLRSSGSTGTRRA--PSH 167
            P       PP     PP A   +       PP  GA T  +    S   T T  A  PS 
Sbjct: 1297 PKGGPATSPPKGAPTPPAATPPSPKGSPGTPPPKGAPTPPAVTPPSPKGTPTLPATTPSS 1356

Query: 168  PAALQVPYTREGPREPTPPAGPQGFAG--SFCAEGSRRGAEVGWGKLEP 214
                  P ++EG   PTPPA      G  +      +RG  +   K +P
Sbjct: 1357 KGGPTTPSSKEG---PTPPAATPSHKGGPAMTPPSPKRGPAIPSPKGDP 1402



 Score = 42.4 bits (98), Expect = 6e-04
 Identities = 48/151 (31%), Positives = 58/151 (38%), Gaps = 33/151 (21%)

Query: 61   TAPRTQQPKPSG--PSSHPREPPLPGAVT-----GGSLHFQEPPPLGAATAGSRHRQKPP 113
            T P    P P G   +  P+  P P A T     GG      P P GA T  +     PP
Sbjct: 964  TPPAATPPSPKGGPATPSPKGAPTPPAATPPSPKGGPA---TPSPKGAPTPPA---VTPP 1017

Query: 114  SPGSRHRWEPPPPGAATATGSRHRREPPSP-----------GATTAGSCHLRS-SGSTGT 161
            SP       P P GA+T   +     PPSP           GA T  +  L S  G   T
Sbjct: 1018 SPKGSPAATPFPKGASTPPAA----TPPSPKGSPAATPLPKGAPTTPAATLPSPKGGPAT 1073

Query: 162  ---RRAPSHPAALQVPYTREGPREPTPPAGP 189
               + AP+ PAA   P  + GP  P+P   P
Sbjct: 1074 PSLKGAPTPPAATP-PSPKGGPATPSPKGAP 1103



 Score = 40.8 bits (94), Expect = 0.002
 Identities = 40/138 (28%), Positives = 49/138 (35%), Gaps = 28/138 (20%)

Query: 55   KRRPGHTAPRTQQPKPSGPSSHP---REPPLPGAVTGGSLHFQEPPPLGAATAGSRHRQK 111
            K  P   AP+ Q P  S  SS P   R  P P  +         P P  A     +    
Sbjct: 897  KEGPATPAPK-QAPALSMTSSSPKKARATPAPKGIPASPSPKGAPTPPAATPPSPKGGPA 955

Query: 112  PPSPGSRHRWEPPPPGAATATGSRHRREPPSPGATTAGSCHLRSSGSTGTRRAPSHPAAL 171
             PSP    +W P PP A           PPSP    A         +   + AP+ PAA 
Sbjct: 956  TPSP----KWAPTPPAAT----------PPSPKGGPA---------TPSPKGAPTPPAAT 992

Query: 172  QVPYTREGPREPTPPAGP 189
              P  + GP  P+P   P
Sbjct: 993  P-PSPKGGPATPSPKGAP 1009



 Score = 37.7 bits (86), Expect = 0.014
 Identities = 49/160 (30%), Positives = 55/160 (34%), Gaps = 42/160 (26%)

Query: 58   PGHTAPRTQQPKPSGPSSHPREPPLPGAVT----------GGSLHFQEPPPLGAATAGSR 107
            P   AP T    P  P      PP  GA T          GG      PPP GA T  + 
Sbjct: 1121 PHKGAPTTPAATPPSPKGGLATPPPKGAPTTPAATPPSPKGG---LATPPPKGAPTTPAA 1177

Query: 108  HRQKPPSPGSRHRWEPPPPGAATATGSRHRREPPSP-----------GATTAGSCHLRSS 156
                PPSP       P P GA T   +     PPSP             TT  +      
Sbjct: 1178 ---TPPSPKGGLA-TPSPKGAPTTPAAT----PPSPKGGLATPSPKGAPTTPAATPPSPK 1229

Query: 157  GSTGT---RRAPSHPAALQVPYTREGPR------EPTPPA 187
            G   T   + AP+ PAA   P  + GP        PTPPA
Sbjct: 1230 GGLATPSPKGAPTTPAATP-PSPKGGPATPPPKGAPTPPA 1268



 Score = 37.4 bits (85), Expect = 0.019
 Identities = 42/145 (28%), Positives = 56/145 (38%), Gaps = 36/145 (24%)

Query: 62   APRTQQPK--PSGPSSH------------PREPPLPGAVTGGSLHFQ---EPPPLGAATA 104
            AP T  PK  P+ PSS             P+EPP P  V   S   +    P P+GA T 
Sbjct: 1446 APATSAPKGGPATPSSKGDPTLPAVTPPSPKEPPAPKQVATSSSPKKAPATPAPMGAPTL 1505

Query: 105  GSRHRQKPPSPGSRHRWEPPPPGAATATGSRHRREPPSPGATTAGSCHLRSSGSTGTRRA 164
             +                P  P    AT S  RR+P +P AT       + + +T   + 
Sbjct: 1506 PA--------------VIPSSPKEVPATPS-SRRDPIAPTATLLS----KKTPATLAPKE 1546

Query: 165  PSHPAALQVPYTREGPREPTPPAGP 189
               P A+ VP  ++ P  PTP   P
Sbjct: 1547 ALIPPAMTVPSPKKTPAIPTPKEAP 1571



 Score = 37.0 bits (84), Expect = 0.025
 Identities = 37/142 (26%), Positives = 49/142 (34%), Gaps = 30/142 (21%)

Query: 48  GLCRSTGKRRPGHTAPRTQQPKPSGPSSHPREPPLPGAVTGGSLHFQEPPPLGAATAGSR 107
           G+  S   +RP           P G  S P  P     +   SL FQ          GS+
Sbjct: 798 GVSVSPQTKRPPTKKGSAGPDTPIGNLSSPVSPVEASFLPENSLSFQ----------GSK 847

Query: 108 HRQKPPSPGSRHRWEPPPPGAATATGSRHRREPPSPGATTAGSCHLRSSGSTGTRRAPSH 167
                 SP + H   PP P  A           P+P A T     L   G T   +    
Sbjct: 848 D-----SPATTHSPTPPSPKGA-----------PTPSAVTP----LSPKGVTLPPKETPT 887

Query: 168 PAALQVPYTREGPREPTPPAGP 189
           P+ + +P+ +EGP  P P   P
Sbjct: 888 PSVVNLPFPKEGPATPAPKQAP 909



 Score = 33.1 bits (74), Expect = 0.36
 Identities = 37/146 (25%), Positives = 55/146 (37%), Gaps = 20/146 (13%)

Query: 55   KRRPGHTAPRTQQPKPSG-PSSHPREPPLP----GAVTGGSLHFQEPP----PLGAATAG 105
            KR P   +P+     P+  P S  + P  P    GA T        P      L  A A 
Sbjct: 1390 KRGPAIPSPKGDPTSPAVIPLSPKKAPATPVTREGAATPSKGDLTPPAVTPVSLKKAPAT 1449

Query: 106  SRHRQKPPSPGSRHRWEPPPPGAATATGSRHRREPPSPGATTAGSCHLRSSGSTGTRRAP 165
            S  +  P +P S+   +P  P     +     +EPP+P      S   ++  +     AP
Sbjct: 1450 SAPKGGPATPSSKG--DPTLPAVTPPSP----KEPPAPKQVATSSSPKKAPATPAPMGAP 1503

Query: 166  SHPAAL-----QVPYTREGPREPTPP 186
            + PA +     +VP T    R+P  P
Sbjct: 1504 TLPAVIPSSPKEVPATPSSRRDPIAP 1529



 Score = 33.1 bits (74), Expect = 0.36
 Identities = 41/161 (25%), Positives = 57/161 (35%), Gaps = 34/161 (21%)

Query: 52   STGKRRPGHTAPRTQQPKPSGPSSHPREPPL-------PGAVTGGSLHFQEPPPLG---- 100
            S+ K+ P   AP      P+   S P+E P        P A T   L  + P  L     
Sbjct: 1488 SSPKKAPATPAPMGAPTLPAVIPSSPKEVPATPSSRRDPIAPTATLLSKKTPATLAPKEA 1547

Query: 101  ----AATAGSRHR--------QKPPSPGSRHRWEPPPPGAATATGSRHRREPPSPGATTA 148
                A T  S  +        + P +P S+    PP    +T  G+   +E   P A T 
Sbjct: 1548 LIPPAMTVPSPKKTPAIPTPKEAPATPSSKEASSPPAVTPSTYKGAPSPKELLIPPAVT- 1606

Query: 149  GSCHLRSSGSTGTRRAPSHPAALQVPYTREGPREPTPPAGP 189
                     S   + AP+ P A+  P   +GP  P P   P
Sbjct: 1607 ---------SPSPKEAPT-PPAVTPPSPEKGPATPAPKGTP 1637


>gi|11386161 alpha 2 type IX collagen [Homo sapiens]
          Length = 689

 Score = 46.2 bits (108), Expect = 4e-05
 Identities = 51/175 (29%), Positives = 64/175 (36%), Gaps = 24/175 (13%)

Query: 70  PSGPSSHPREPPLPGAVTG--GSLHF----------QEPPPLGAATAGSRHRQKPPSPGS 117
           PSGP   P +P  PG + G  GS  F          + PP L      +  R     PG 
Sbjct: 147 PSGPPGPPGKPGRPGTIQGLEGSADFLCPTNCPPGMKGPPGLQGVKGHAGKRGILGDPG- 205

Query: 118 RHRWEPPPPGAATATGSRHRREPPSPGATTAGSCHLRSSGSTGTRRAPSHPAALQV--PY 175
            H+ +P P G   A+G +    PP P             G TG         A+    P 
Sbjct: 206 -HQGKPGPKGDVGASGEQGIPGPPGPQGIRGYPGMAGPKGETGPHGYKGMVGAIGATGPP 264

Query: 176 TREGPREPTPPAGPQGFAGSFCAEGSRRGAEVGWGKLEPQG-TRRTGSLGVDSSP 229
             EGPR P   AG +G  GS    G +       G   P+G T   G  G D +P
Sbjct: 265 GEEGPRGPPGRAGEKGDEGSPGIRGPQ-------GITGPKGATGPPGINGKDGTP 312



 Score = 30.0 bits (66), Expect = 3.0
 Identities = 41/149 (27%), Positives = 50/149 (33%), Gaps = 20/149 (13%)

Query: 58  PGHTAPRTQQPKPSGPSSHPREPPLPGAVTGGSLHFQEPPPLGAATAGSRHRQKPPSPGS 117
           PG   P    P   GP  HP    +PG + G         P G        R +   PG 
Sbjct: 558 PGPPGP-PGYPGKQGPHGHPGPRGVPG-IVGAVGQIGNTGPKG-------KRGEKGDPGE 608

Query: 118 RHRWEPPPPGAATATGSRHRREPPSPGATTAGSCHLRSS-GSTGTRRAPSHPAALQVPYT 176
             R  P  PG     G      P  PG    G    R S G+ G    P  P  + +P  
Sbjct: 609 VGRGHPGMPGPPGIPGL-----PGRPGQAINGKDGDRGSPGAPGEAGRPGLPGPVGLP-- 661

Query: 177 REGPREPTPPAGPQGFAGSFCAE-GSRRG 204
             G  EP    G   +A +   E GS +G
Sbjct: 662 --GFCEPAACLGASAYASARLTEPGSIKG 688


>gi|112382226 atrophin-1 like protein isoform b [Homo sapiens]
          Length = 1012

 Score = 46.2 bits (108), Expect = 4e-05
 Identities = 58/223 (26%), Positives = 77/223 (34%), Gaps = 46/223 (20%)

Query: 58  PGHTAPRTQQPKPSGPSS-----HPREPPLPGAVTGGSLHFQEPP--PLGAATAGSRHRQ 110
           P    P T    P+  S+      PRE PLP A      H + PP  P+    A   H+ 
Sbjct: 335 PAAAYPHTSLQLPASQSALQSQQPPREQPLPPAPLAMP-HIKPPPTTPIPQLPAPQAHKH 393

Query: 111 KP----PSPGSRHRWEPPPPGAATATGSRHRREPPS---------PGATTAGSCHLRSSG 157
            P    PSP S +   PPPP A     S     PPS         P +    S   +  G
Sbjct: 394 PPHLSGPSPFSMNANLPPPP-ALKPLSSLSTHHPPSAHPPPLQLMPQSQPLPSSPAQPPG 452

Query: 158 STGTRRAPSHPAA---------------LQVPYTREGP---------REPTPPAGPQGFA 193
            T ++  P  PA+                Q P+   GP            TPPAGP   A
Sbjct: 453 LTQSQNLPPPPASHPPTGLHQVAPQPPFAQHPFVPGGPPPITPPTCPSTSTPPAGPGTSA 512

Query: 194 GSFCAEGSRRGAEVGWGKLEPQGTRRTGSLGVDSSPLSETLGP 236
              C+  +  G  +  G   P  T +     +D +   E+  P
Sbjct: 513 QPPCSGAAASGGSIAGGSSCPLPTVQIKEEALDDAEEPESPPP 555



 Score = 42.7 bits (99), Expect = 4e-04
 Identities = 42/133 (31%), Positives = 53/133 (39%), Gaps = 11/133 (8%)

Query: 58  PGHTAPRTQQPKPSGPSSHPREPPLPGAVTGGSLHFQEPPPLGAATAGSRHRQKPPSPGS 117
           P   AP    P PS  S+ P  P LP    G +      PP G+ TA     Q P +P +
Sbjct: 185 PALQAPTGVTPAPS--SAPPGTPQLP--TPGPTPSATAVPPQGSPTASQAPNQ-PQAPTA 239

Query: 118 RHRWEPPPPGAATATGSRHRREPPSPGATTAGSCHLRSSGSTGTRRAPSHPAALQVPYTR 177
                P P        + H + PPSP      S H      TG+   PS P+  Q P   
Sbjct: 240 -----PVPHTHIQQAPALHPQRPPSPHPPPHPSPHPPLQPLTGSAGQPSAPSHAQPPLHG 294

Query: 178 EGPREP-TPPAGP 189
           +GP  P +  AGP
Sbjct: 295 QGPPGPHSLQAGP 307



 Score = 33.1 bits (74), Expect = 0.36
 Identities = 44/175 (25%), Positives = 62/175 (35%), Gaps = 47/175 (26%)

Query: 61  TAPRTQQPKPSGPSSHPREPPLPGAVTGGSL--------HFQEPP-------PLGAATAG 105
           +A +   P  + P  H + PP P ++  G L         F  PP       PLG + A 
Sbjct: 278 SAGQPSAPSHAQPPLHGQGPPGPHSLQAGPLLQHPGPPQPFGLPPQASQGQAPLGTSPAA 337

Query: 106 S---------------------RHRQKPPSPGSRHRWEPPP--PGAATATGSRHRREP-- 140
           +                     R +  PP+P +    +PPP  P         H+  P  
Sbjct: 338 AYPHTSLQLPASQSALQSQQPPREQPLPPAPLAMPHIKPPPTTPIPQLPAPQAHKHPPHL 397

Query: 141 --PSPGATTAG---SCHLRSSGSTGTRRAPS-HPAALQ-VPYTREGPREPTPPAG 188
             PSP +  A       L+   S  T   PS HP  LQ +P ++  P  P  P G
Sbjct: 398 SGPSPFSMNANLPPPPALKPLSSLSTHHPPSAHPPPLQLMPQSQPLPSSPAQPPG 452


>gi|112382224 atrophin-1 like protein isoform a [Homo sapiens]
          Length = 1566

 Score = 46.2 bits (108), Expect = 4e-05
 Identities = 58/223 (26%), Positives = 77/223 (34%), Gaps = 46/223 (20%)

Query: 58   PGHTAPRTQQPKPSGPSS-----HPREPPLPGAVTGGSLHFQEPP--PLGAATAGSRHRQ 110
            P    P T    P+  S+      PRE PLP A      H + PP  P+    A   H+ 
Sbjct: 889  PAAAYPHTSLQLPASQSALQSQQPPREQPLPPAPLAMP-HIKPPPTTPIPQLPAPQAHKH 947

Query: 111  KP----PSPGSRHRWEPPPPGAATATGSRHRREPPS---------PGATTAGSCHLRSSG 157
             P    PSP S +   PPPP A     S     PPS         P +    S   +  G
Sbjct: 948  PPHLSGPSPFSMNANLPPPP-ALKPLSSLSTHHPPSAHPPPLQLMPQSQPLPSSPAQPPG 1006

Query: 158  STGTRRAPSHPAA---------------LQVPYTREGP---------REPTPPAGPQGFA 193
             T ++  P  PA+                Q P+   GP            TPPAGP   A
Sbjct: 1007 LTQSQNLPPPPASHPPTGLHQVAPQPPFAQHPFVPGGPPPITPPTCPSTSTPPAGPGTSA 1066

Query: 194  GSFCAEGSRRGAEVGWGKLEPQGTRRTGSLGVDSSPLSETLGP 236
               C+  +  G  +  G   P  T +     +D +   E+  P
Sbjct: 1067 QPPCSGAAASGGSIAGGSSCPLPTVQIKEEALDDAEEPESPPP 1109



 Score = 42.7 bits (99), Expect = 4e-04
 Identities = 42/133 (31%), Positives = 53/133 (39%), Gaps = 11/133 (8%)

Query: 58  PGHTAPRTQQPKPSGPSSHPREPPLPGAVTGGSLHFQEPPPLGAATAGSRHRQKPPSPGS 117
           P   AP    P PS  S+ P  P LP    G +      PP G+ TA     Q P +P +
Sbjct: 739 PALQAPTGVTPAPS--SAPPGTPQLP--TPGPTPSATAVPPQGSPTASQAPNQ-PQAPTA 793

Query: 118 RHRWEPPPPGAATATGSRHRREPPSPGATTAGSCHLRSSGSTGTRRAPSHPAALQVPYTR 177
                P P        + H + PPSP      S H      TG+   PS P+  Q P   
Sbjct: 794 -----PVPHTHIQQAPALHPQRPPSPHPPPHPSPHPPLQPLTGSAGQPSAPSHAQPPLHG 848

Query: 178 EGPREP-TPPAGP 189
           +GP  P +  AGP
Sbjct: 849 QGPPGPHSLQAGP 861



 Score = 33.1 bits (74), Expect = 0.36
 Identities = 44/175 (25%), Positives = 62/175 (35%), Gaps = 47/175 (26%)

Query: 61   TAPRTQQPKPSGPSSHPREPPLPGAVTGGSL--------HFQEPP-------PLGAATAG 105
            +A +   P  + P  H + PP P ++  G L         F  PP       PLG + A 
Sbjct: 832  SAGQPSAPSHAQPPLHGQGPPGPHSLQAGPLLQHPGPPQPFGLPPQASQGQAPLGTSPAA 891

Query: 106  S---------------------RHRQKPPSPGSRHRWEPPP--PGAATATGSRHRREP-- 140
            +                     R +  PP+P +    +PPP  P         H+  P  
Sbjct: 892  AYPHTSLQLPASQSALQSQQPPREQPLPPAPLAMPHIKPPPTTPIPQLPAPQAHKHPPHL 951

Query: 141  --PSPGATTAG---SCHLRSSGSTGTRRAPS-HPAALQ-VPYTREGPREPTPPAG 188
              PSP +  A       L+   S  T   PS HP  LQ +P ++  P  P  P G
Sbjct: 952  SGPSPFSMNANLPPPPALKPLSSLSTHHPPSAHPPPLQLMPQSQPLPSSPAQPPG 1006


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.316    0.135    0.445 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,193,543
Number of Sequences: 37866
Number of extensions: 1394559
Number of successful extensions: 13602
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 151
Number of HSP's successfully gapped in prelim test: 1390
Number of HSP's that attempted gapping in prelim test: 8623
Number of HSP's gapped (non-prelim): 4480
length of query: 333
length of database: 18,247,518
effective HSP length: 103
effective length of query: 230
effective length of database: 14,347,320
effective search space: 3299883600
effective search space used: 3299883600
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 62 (28.5 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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