BLASTP 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|239754873 PREDICTED: similar to hCG2040393 [Homo sapiens] (333 letters) Database: hs.faa 37,866 sequences; 18,247,518 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|239754873 PREDICTED: similar to hCG2040393 [Homo sapiens] 721 0.0 gi|239749412 PREDICTED: hypothetical protein XP_002347031 [Homo ... 721 0.0 gi|239743547 PREDICTED: hypothetical protein XP_002342883 [Homo ... 721 0.0 gi|134254450 patched isoform S [Homo sapiens] 92 6e-19 gi|134254435 patched isoform S [Homo sapiens] 92 6e-19 gi|134254468 patched isoform S [Homo sapiens] 92 6e-19 gi|134254452 patched isoform S [Homo sapiens] 92 6e-19 gi|134254432 patched isoform L' [Homo sapiens] 92 6e-19 gi|134254466 patched isoform M [Homo sapiens] 92 6e-19 gi|134254446 patched isoform L [Homo sapiens] 92 6e-19 gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens] 55 7e-08 gi|37537692 proline-rich protein BstNI subfamily 4 precursor [Ho... 55 7e-08 gi|41349482 proline-rich protein BstNI subfamily 1 isoform 1 pre... 53 4e-07 gi|117306167 proline-rich protein BstNI subfamily 3 precursor [H... 50 2e-06 gi|116284398 WAS/WASL interacting protein family, member 1 [Homo... 49 6e-06 gi|38373695 WAS/WASL interacting protein family, member 1 [Homo ... 49 6e-06 gi|209571537 proline-rich protein BstNI subfamily 2 [Homo sapiens] 49 8e-06 gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens] 48 1e-05 gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Hom... 48 1e-05 gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Hom... 48 1e-05 gi|119829187 alpha 1 type XVII collagen [Homo sapiens] 48 1e-05 gi|41349486 proline-rich protein BstNI subfamily 1 isoform 3 pre... 48 1e-05 gi|51702526 Wiskott-Aldrich syndrome gene-like protein [Homo sap... 47 2e-05 gi|41349484 proline-rich protein BstNI subfamily 1 isoform 2 pre... 47 2e-05 gi|32140760 collagen, type XXVII, alpha 1 [Homo sapiens] 47 3e-05 gi|4826998 splicing factor proline/glutamine rich (polypyrimidin... 47 3e-05 gi|163965366 nascent polypeptide-associated complex alpha subuni... 47 3e-05 gi|11386161 alpha 2 type IX collagen [Homo sapiens] 46 4e-05 gi|112382226 atrophin-1 like protein isoform b [Homo sapiens] 46 4e-05 gi|112382224 atrophin-1 like protein isoform a [Homo sapiens] 46 4e-05 >gi|239754873 PREDICTED: similar to hCG2040393 [Homo sapiens] Length = 333 Score = 721 bits (1862), Expect = 0.0 Identities = 333/333 (100%), Positives = 333/333 (100%) Query: 1 MEGVLFFFFHLIYSITEPLQPLHAAHTRHSPWVREPEQRHSETGWFRGLCRSTGKRRPGH 60 MEGVLFFFFHLIYSITEPLQPLHAAHTRHSPWVREPEQRHSETGWFRGLCRSTGKRRPGH Sbjct: 1 MEGVLFFFFHLIYSITEPLQPLHAAHTRHSPWVREPEQRHSETGWFRGLCRSTGKRRPGH 60 Query: 61 TAPRTQQPKPSGPSSHPREPPLPGAVTGGSLHFQEPPPLGAATAGSRHRQKPPSPGSRHR 120 TAPRTQQPKPSGPSSHPREPPLPGAVTGGSLHFQEPPPLGAATAGSRHRQKPPSPGSRHR Sbjct: 61 TAPRTQQPKPSGPSSHPREPPLPGAVTGGSLHFQEPPPLGAATAGSRHRQKPPSPGSRHR 120 Query: 121 WEPPPPGAATATGSRHRREPPSPGATTAGSCHLRSSGSTGTRRAPSHPAALQVPYTREGP 180 WEPPPPGAATATGSRHRREPPSPGATTAGSCHLRSSGSTGTRRAPSHPAALQVPYTREGP Sbjct: 121 WEPPPPGAATATGSRHRREPPSPGATTAGSCHLRSSGSTGTRRAPSHPAALQVPYTREGP 180 Query: 181 REPTPPAGPQGFAGSFCAEGSRRGAEVGWGKLEPQGTRRTGSLGVDSSPLSETLGPAQCG 240 REPTPPAGPQGFAGSFCAEGSRRGAEVGWGKLEPQGTRRTGSLGVDSSPLSETLGPAQCG Sbjct: 181 REPTPPAGPQGFAGSFCAEGSRRGAEVGWGKLEPQGTRRTGSLGVDSSPLSETLGPAQCG 240 Query: 241 SGRRRACSVLHHHCDGIRFRDCHCAPSACPGPTQDPQAGLCTGQEGYPGTDHGLFMGPHL 300 SGRRRACSVLHHHCDGIRFRDCHCAPSACPGPTQDPQAGLCTGQEGYPGTDHGLFMGPHL Sbjct: 241 SGRRRACSVLHHHCDGIRFRDCHCAPSACPGPTQDPQAGLCTGQEGYPGTDHGLFMGPHL 300 Query: 301 LFQVQGERTNLKVEVTELQDVECEEWPRGSSSN 333 LFQVQGERTNLKVEVTELQDVECEEWPRGSSSN Sbjct: 301 LFQVQGERTNLKVEVTELQDVECEEWPRGSSSN 333 >gi|239749412 PREDICTED: hypothetical protein XP_002347031 [Homo sapiens] Length = 333 Score = 721 bits (1862), Expect = 0.0 Identities = 333/333 (100%), Positives = 333/333 (100%) Query: 1 MEGVLFFFFHLIYSITEPLQPLHAAHTRHSPWVREPEQRHSETGWFRGLCRSTGKRRPGH 60 MEGVLFFFFHLIYSITEPLQPLHAAHTRHSPWVREPEQRHSETGWFRGLCRSTGKRRPGH Sbjct: 1 MEGVLFFFFHLIYSITEPLQPLHAAHTRHSPWVREPEQRHSETGWFRGLCRSTGKRRPGH 60 Query: 61 TAPRTQQPKPSGPSSHPREPPLPGAVTGGSLHFQEPPPLGAATAGSRHRQKPPSPGSRHR 120 TAPRTQQPKPSGPSSHPREPPLPGAVTGGSLHFQEPPPLGAATAGSRHRQKPPSPGSRHR Sbjct: 61 TAPRTQQPKPSGPSSHPREPPLPGAVTGGSLHFQEPPPLGAATAGSRHRQKPPSPGSRHR 120 Query: 121 WEPPPPGAATATGSRHRREPPSPGATTAGSCHLRSSGSTGTRRAPSHPAALQVPYTREGP 180 WEPPPPGAATATGSRHRREPPSPGATTAGSCHLRSSGSTGTRRAPSHPAALQVPYTREGP Sbjct: 121 WEPPPPGAATATGSRHRREPPSPGATTAGSCHLRSSGSTGTRRAPSHPAALQVPYTREGP 180 Query: 181 REPTPPAGPQGFAGSFCAEGSRRGAEVGWGKLEPQGTRRTGSLGVDSSPLSETLGPAQCG 240 REPTPPAGPQGFAGSFCAEGSRRGAEVGWGKLEPQGTRRTGSLGVDSSPLSETLGPAQCG Sbjct: 181 REPTPPAGPQGFAGSFCAEGSRRGAEVGWGKLEPQGTRRTGSLGVDSSPLSETLGPAQCG 240 Query: 241 SGRRRACSVLHHHCDGIRFRDCHCAPSACPGPTQDPQAGLCTGQEGYPGTDHGLFMGPHL 300 SGRRRACSVLHHHCDGIRFRDCHCAPSACPGPTQDPQAGLCTGQEGYPGTDHGLFMGPHL Sbjct: 241 SGRRRACSVLHHHCDGIRFRDCHCAPSACPGPTQDPQAGLCTGQEGYPGTDHGLFMGPHL 300 Query: 301 LFQVQGERTNLKVEVTELQDVECEEWPRGSSSN 333 LFQVQGERTNLKVEVTELQDVECEEWPRGSSSN Sbjct: 301 LFQVQGERTNLKVEVTELQDVECEEWPRGSSSN 333 >gi|239743547 PREDICTED: hypothetical protein XP_002342883 [Homo sapiens] Length = 333 Score = 721 bits (1862), Expect = 0.0 Identities = 333/333 (100%), Positives = 333/333 (100%) Query: 1 MEGVLFFFFHLIYSITEPLQPLHAAHTRHSPWVREPEQRHSETGWFRGLCRSTGKRRPGH 60 MEGVLFFFFHLIYSITEPLQPLHAAHTRHSPWVREPEQRHSETGWFRGLCRSTGKRRPGH Sbjct: 1 MEGVLFFFFHLIYSITEPLQPLHAAHTRHSPWVREPEQRHSETGWFRGLCRSTGKRRPGH 60 Query: 61 TAPRTQQPKPSGPSSHPREPPLPGAVTGGSLHFQEPPPLGAATAGSRHRQKPPSPGSRHR 120 TAPRTQQPKPSGPSSHPREPPLPGAVTGGSLHFQEPPPLGAATAGSRHRQKPPSPGSRHR Sbjct: 61 TAPRTQQPKPSGPSSHPREPPLPGAVTGGSLHFQEPPPLGAATAGSRHRQKPPSPGSRHR 120 Query: 121 WEPPPPGAATATGSRHRREPPSPGATTAGSCHLRSSGSTGTRRAPSHPAALQVPYTREGP 180 WEPPPPGAATATGSRHRREPPSPGATTAGSCHLRSSGSTGTRRAPSHPAALQVPYTREGP Sbjct: 121 WEPPPPGAATATGSRHRREPPSPGATTAGSCHLRSSGSTGTRRAPSHPAALQVPYTREGP 180 Query: 181 REPTPPAGPQGFAGSFCAEGSRRGAEVGWGKLEPQGTRRTGSLGVDSSPLSETLGPAQCG 240 REPTPPAGPQGFAGSFCAEGSRRGAEVGWGKLEPQGTRRTGSLGVDSSPLSETLGPAQCG Sbjct: 181 REPTPPAGPQGFAGSFCAEGSRRGAEVGWGKLEPQGTRRTGSLGVDSSPLSETLGPAQCG 240 Query: 241 SGRRRACSVLHHHCDGIRFRDCHCAPSACPGPTQDPQAGLCTGQEGYPGTDHGLFMGPHL 300 SGRRRACSVLHHHCDGIRFRDCHCAPSACPGPTQDPQAGLCTGQEGYPGTDHGLFMGPHL Sbjct: 241 SGRRRACSVLHHHCDGIRFRDCHCAPSACPGPTQDPQAGLCTGQEGYPGTDHGLFMGPHL 300 Query: 301 LFQVQGERTNLKVEVTELQDVECEEWPRGSSSN 333 LFQVQGERTNLKVEVTELQDVECEEWPRGSSSN Sbjct: 301 LFQVQGERTNLKVEVTELQDVECEEWPRGSSSN 333 >gi|134254450 patched isoform S [Homo sapiens] Length = 1296 Score = 92.0 bits (227), Expect = 6e-19 Identities = 93/295 (31%), Positives = 113/295 (38%), Gaps = 52/295 (17%) Query: 58 PGHTAPRTQQPKPSGPSSHPREPPLPGAVTGGS----LHFQEPPPLGAATAGSRHRQKPP 113 P + R P P P S R PG GS + + + RH + Sbjct: 1035 PANGLNRLPTPSPEPPPSVVRFAMPPGHTHSGSDSSDSEYSSQTTVSGLSEELRHYEAQQ 1094 Query: 114 SPGSR------HRWEPPPPGAATATGSRHRREPPSPGATTAGSCHLRSSGSTGTRRAPSH 167 G E P +T R PPS HL SGS R Sbjct: 1095 GAGGPAHQVIVEATENPVFAHSTVVHPESRHHPPS---NPRQQPHL-DSGSLPPGRQGQQ 1150 Query: 168 PAALQVPYTREGPREPT--PPAGPQGFAGSFCAEG-SRRGAEVGWGKLEPQGTRRTGSLG 224 P R+ PRE PP P+ A EG S WG P+G R Sbjct: 1151 PR-------RDPPREGLWPPPYRPRRDAFEISTEGHSGPSNRARWG---PRGARSHNP-- 1198 Query: 225 VDSSPLSETLGPAQCGSGRRRACSVLHHHCDGIRFRDCHCA------PSACPGPTQDPQA 278 +P S +G + G +C I + P PGP ++P+ Sbjct: 1199 --RNPASTAMGSSVPG------------YCQPITTVTASASVTVAVHPPPVPGPGRNPRG 1244 Query: 279 GLCTGQEGYPGTDHGLFMGPHLLFQVQGERTNLKVEVTELQDVECEEWPRGSSSN 333 GLC G YP TDHGLF PH+ F V+ ER + KVEV ELQDVECEE PRGSSSN Sbjct: 1245 GLCPG---YPETDHGLFEDPHVPFHVRCERRDSKVEVIELQDVECEERPRGSSSN 1296 >gi|134254435 patched isoform S [Homo sapiens] Length = 1296 Score = 92.0 bits (227), Expect = 6e-19 Identities = 93/295 (31%), Positives = 113/295 (38%), Gaps = 52/295 (17%) Query: 58 PGHTAPRTQQPKPSGPSSHPREPPLPGAVTGGS----LHFQEPPPLGAATAGSRHRQKPP 113 P + R P P P S R PG GS + + + RH + Sbjct: 1035 PANGLNRLPTPSPEPPPSVVRFAMPPGHTHSGSDSSDSEYSSQTTVSGLSEELRHYEAQQ 1094 Query: 114 SPGSR------HRWEPPPPGAATATGSRHRREPPSPGATTAGSCHLRSSGSTGTRRAPSH 167 G E P +T R PPS HL SGS R Sbjct: 1095 GAGGPAHQVIVEATENPVFAHSTVVHPESRHHPPS---NPRQQPHL-DSGSLPPGRQGQQ 1150 Query: 168 PAALQVPYTREGPREPT--PPAGPQGFAGSFCAEG-SRRGAEVGWGKLEPQGTRRTGSLG 224 P R+ PRE PP P+ A EG S WG P+G R Sbjct: 1151 PR-------RDPPREGLWPPPYRPRRDAFEISTEGHSGPSNRARWG---PRGARSHNP-- 1198 Query: 225 VDSSPLSETLGPAQCGSGRRRACSVLHHHCDGIRFRDCHCA------PSACPGPTQDPQA 278 +P S +G + G +C I + P PGP ++P+ Sbjct: 1199 --RNPASTAMGSSVPG------------YCQPITTVTASASVTVAVHPPPVPGPGRNPRG 1244 Query: 279 GLCTGQEGYPGTDHGLFMGPHLLFQVQGERTNLKVEVTELQDVECEEWPRGSSSN 333 GLC G YP TDHGLF PH+ F V+ ER + KVEV ELQDVECEE PRGSSSN Sbjct: 1245 GLCPG---YPETDHGLFEDPHVPFHVRCERRDSKVEVIELQDVECEERPRGSSSN 1296 >gi|134254468 patched isoform S [Homo sapiens] Length = 1296 Score = 92.0 bits (227), Expect = 6e-19 Identities = 93/295 (31%), Positives = 113/295 (38%), Gaps = 52/295 (17%) Query: 58 PGHTAPRTQQPKPSGPSSHPREPPLPGAVTGGS----LHFQEPPPLGAATAGSRHRQKPP 113 P + R P P P S R PG GS + + + RH + Sbjct: 1035 PANGLNRLPTPSPEPPPSVVRFAMPPGHTHSGSDSSDSEYSSQTTVSGLSEELRHYEAQQ 1094 Query: 114 SPGSR------HRWEPPPPGAATATGSRHRREPPSPGATTAGSCHLRSSGSTGTRRAPSH 167 G E P +T R PPS HL SGS R Sbjct: 1095 GAGGPAHQVIVEATENPVFAHSTVVHPESRHHPPS---NPRQQPHL-DSGSLPPGRQGQQ 1150 Query: 168 PAALQVPYTREGPREPT--PPAGPQGFAGSFCAEG-SRRGAEVGWGKLEPQGTRRTGSLG 224 P R+ PRE PP P+ A EG S WG P+G R Sbjct: 1151 PR-------RDPPREGLWPPPYRPRRDAFEISTEGHSGPSNRARWG---PRGARSHNP-- 1198 Query: 225 VDSSPLSETLGPAQCGSGRRRACSVLHHHCDGIRFRDCHCA------PSACPGPTQDPQA 278 +P S +G + G +C I + P PGP ++P+ Sbjct: 1199 --RNPASTAMGSSVPG------------YCQPITTVTASASVTVAVHPPPVPGPGRNPRG 1244 Query: 279 GLCTGQEGYPGTDHGLFMGPHLLFQVQGERTNLKVEVTELQDVECEEWPRGSSSN 333 GLC G YP TDHGLF PH+ F V+ ER + KVEV ELQDVECEE PRGSSSN Sbjct: 1245 GLCPG---YPETDHGLFEDPHVPFHVRCERRDSKVEVIELQDVECEERPRGSSSN 1296 >gi|134254452 patched isoform S [Homo sapiens] Length = 1296 Score = 92.0 bits (227), Expect = 6e-19 Identities = 93/295 (31%), Positives = 113/295 (38%), Gaps = 52/295 (17%) Query: 58 PGHTAPRTQQPKPSGPSSHPREPPLPGAVTGGS----LHFQEPPPLGAATAGSRHRQKPP 113 P + R P P P S R PG GS + + + RH + Sbjct: 1035 PANGLNRLPTPSPEPPPSVVRFAMPPGHTHSGSDSSDSEYSSQTTVSGLSEELRHYEAQQ 1094 Query: 114 SPGSR------HRWEPPPPGAATATGSRHRREPPSPGATTAGSCHLRSSGSTGTRRAPSH 167 G E P +T R PPS HL SGS R Sbjct: 1095 GAGGPAHQVIVEATENPVFAHSTVVHPESRHHPPS---NPRQQPHL-DSGSLPPGRQGQQ 1150 Query: 168 PAALQVPYTREGPREPT--PPAGPQGFAGSFCAEG-SRRGAEVGWGKLEPQGTRRTGSLG 224 P R+ PRE PP P+ A EG S WG P+G R Sbjct: 1151 PR-------RDPPREGLWPPPYRPRRDAFEISTEGHSGPSNRARWG---PRGARSHNP-- 1198 Query: 225 VDSSPLSETLGPAQCGSGRRRACSVLHHHCDGIRFRDCHCA------PSACPGPTQDPQA 278 +P S +G + G +C I + P PGP ++P+ Sbjct: 1199 --RNPASTAMGSSVPG------------YCQPITTVTASASVTVAVHPPPVPGPGRNPRG 1244 Query: 279 GLCTGQEGYPGTDHGLFMGPHLLFQVQGERTNLKVEVTELQDVECEEWPRGSSSN 333 GLC G YP TDHGLF PH+ F V+ ER + KVEV ELQDVECEE PRGSSSN Sbjct: 1245 GLCPG---YPETDHGLFEDPHVPFHVRCERRDSKVEVIELQDVECEERPRGSSSN 1296 >gi|134254432 patched isoform L' [Homo sapiens] Length = 1446 Score = 92.0 bits (227), Expect = 6e-19 Identities = 93/295 (31%), Positives = 113/295 (38%), Gaps = 52/295 (17%) Query: 58 PGHTAPRTQQPKPSGPSSHPREPPLPGAVTGGS----LHFQEPPPLGAATAGSRHRQKPP 113 P + R P P P S R PG GS + + + RH + Sbjct: 1185 PANGLNRLPTPSPEPPPSVVRFAMPPGHTHSGSDSSDSEYSSQTTVSGLSEELRHYEAQQ 1244 Query: 114 SPGSR------HRWEPPPPGAATATGSRHRREPPSPGATTAGSCHLRSSGSTGTRRAPSH 167 G E P +T R PPS HL SGS R Sbjct: 1245 GAGGPAHQVIVEATENPVFAHSTVVHPESRHHPPS---NPRQQPHL-DSGSLPPGRQGQQ 1300 Query: 168 PAALQVPYTREGPREPT--PPAGPQGFAGSFCAEG-SRRGAEVGWGKLEPQGTRRTGSLG 224 P R+ PRE PP P+ A EG S WG P+G R Sbjct: 1301 PR-------RDPPREGLWPPPYRPRRDAFEISTEGHSGPSNRARWG---PRGARSHNP-- 1348 Query: 225 VDSSPLSETLGPAQCGSGRRRACSVLHHHCDGIRFRDCHCA------PSACPGPTQDPQA 278 +P S +G + G +C I + P PGP ++P+ Sbjct: 1349 --RNPASTAMGSSVPG------------YCQPITTVTASASVTVAVHPPPVPGPGRNPRG 1394 Query: 279 GLCTGQEGYPGTDHGLFMGPHLLFQVQGERTNLKVEVTELQDVECEEWPRGSSSN 333 GLC G YP TDHGLF PH+ F V+ ER + KVEV ELQDVECEE PRGSSSN Sbjct: 1395 GLCPG---YPETDHGLFEDPHVPFHVRCERRDSKVEVIELQDVECEERPRGSSSN 1446 >gi|134254466 patched isoform M [Homo sapiens] Length = 1381 Score = 92.0 bits (227), Expect = 6e-19 Identities = 93/295 (31%), Positives = 113/295 (38%), Gaps = 52/295 (17%) Query: 58 PGHTAPRTQQPKPSGPSSHPREPPLPGAVTGGS----LHFQEPPPLGAATAGSRHRQKPP 113 P + R P P P S R PG GS + + + RH + Sbjct: 1120 PANGLNRLPTPSPEPPPSVVRFAMPPGHTHSGSDSSDSEYSSQTTVSGLSEELRHYEAQQ 1179 Query: 114 SPGSR------HRWEPPPPGAATATGSRHRREPPSPGATTAGSCHLRSSGSTGTRRAPSH 167 G E P +T R PPS HL SGS R Sbjct: 1180 GAGGPAHQVIVEATENPVFAHSTVVHPESRHHPPS---NPRQQPHL-DSGSLPPGRQGQQ 1235 Query: 168 PAALQVPYTREGPREPT--PPAGPQGFAGSFCAEG-SRRGAEVGWGKLEPQGTRRTGSLG 224 P R+ PRE PP P+ A EG S WG P+G R Sbjct: 1236 PR-------RDPPREGLWPPPYRPRRDAFEISTEGHSGPSNRARWG---PRGARSHNP-- 1283 Query: 225 VDSSPLSETLGPAQCGSGRRRACSVLHHHCDGIRFRDCHCA------PSACPGPTQDPQA 278 +P S +G + G +C I + P PGP ++P+ Sbjct: 1284 --RNPASTAMGSSVPG------------YCQPITTVTASASVTVAVHPPPVPGPGRNPRG 1329 Query: 279 GLCTGQEGYPGTDHGLFMGPHLLFQVQGERTNLKVEVTELQDVECEEWPRGSSSN 333 GLC G YP TDHGLF PH+ F V+ ER + KVEV ELQDVECEE PRGSSSN Sbjct: 1330 GLCPG---YPETDHGLFEDPHVPFHVRCERRDSKVEVIELQDVECEERPRGSSSN 1381 >gi|134254446 patched isoform L [Homo sapiens] Length = 1447 Score = 92.0 bits (227), Expect = 6e-19 Identities = 93/295 (31%), Positives = 113/295 (38%), Gaps = 52/295 (17%) Query: 58 PGHTAPRTQQPKPSGPSSHPREPPLPGAVTGGS----LHFQEPPPLGAATAGSRHRQKPP 113 P + R P P P S R PG GS + + + RH + Sbjct: 1186 PANGLNRLPTPSPEPPPSVVRFAMPPGHTHSGSDSSDSEYSSQTTVSGLSEELRHYEAQQ 1245 Query: 114 SPGSR------HRWEPPPPGAATATGSRHRREPPSPGATTAGSCHLRSSGSTGTRRAPSH 167 G E P +T R PPS HL SGS R Sbjct: 1246 GAGGPAHQVIVEATENPVFAHSTVVHPESRHHPPS---NPRQQPHL-DSGSLPPGRQGQQ 1301 Query: 168 PAALQVPYTREGPREPT--PPAGPQGFAGSFCAEG-SRRGAEVGWGKLEPQGTRRTGSLG 224 P R+ PRE PP P+ A EG S WG P+G R Sbjct: 1302 PR-------RDPPREGLWPPPYRPRRDAFEISTEGHSGPSNRARWG---PRGARSHNP-- 1349 Query: 225 VDSSPLSETLGPAQCGSGRRRACSVLHHHCDGIRFRDCHCA------PSACPGPTQDPQA 278 +P S +G + G +C I + P PGP ++P+ Sbjct: 1350 --RNPASTAMGSSVPG------------YCQPITTVTASASVTVAVHPPPVPGPGRNPRG 1395 Query: 279 GLCTGQEGYPGTDHGLFMGPHLLFQVQGERTNLKVEVTELQDVECEEWPRGSSSN 333 GLC G YP TDHGLF PH+ F V+ ER + KVEV ELQDVECEE PRGSSSN Sbjct: 1396 GLCPG---YPETDHGLFEDPHVPFHVRCERRDSKVEVIELQDVECEERPRGSSSN 1447 >gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens] Length = 1466 Score = 55.5 bits (132), Expect = 7e-08 Identities = 48/141 (34%), Positives = 54/141 (38%), Gaps = 14/141 (9%) Query: 58 PGHTAPRTQQPKPS--GPSSHPREPPLPGAVTGGSLHFQEPPPLGAATAGSRHRQKPPSP 115 PG P + KP GP P PG + PP A G R PP P Sbjct: 644 PGTGGPPGENGKPGEPGPKGDAGAPGAPGGKGDAGAPGERGPPGLAGAPGLRGGAGPPGP 703 Query: 116 --GSRHRWEPPPPGAATATGSRHRREPPSPGATTAGSCHLRSSGSTGTRRAPSHPAALQV 173 G P PPGAA G + PG L S G G + P P A V Sbjct: 704 EGGKGAAGPPGPPGAAGTPGLQGM-----PGERGG----LGSPGPKGDKGEPGGPGADGV 754 Query: 174 PYTREGPREPTPPAGPQGFAG 194 P ++GPR PT P GP G AG Sbjct: 755 P-GKDGPRGPTGPIGPPGPAG 774 Score = 43.9 bits (102), Expect = 2e-04 Identities = 44/152 (28%), Positives = 53/152 (34%), Gaps = 17/152 (11%) Query: 46 FRGLCRSTGKRRPGHTAPRTQQ--PKPSGPSSHPREPPLPGAVTGGSLHFQEPPPLGAAT 103 FRG G PG P ++ P P+GP EP G G + P G + Sbjct: 490 FRGPAGPNGI--PGEKGPAGERGAPGPAGPRGAAGEPGRDGVPGGPGMRGMPGSPGGPGS 547 Query: 104 AGSRHRQKPPSPGSR-HRWEPPPPGAATATGSRHRREPPSPGATTAGSCHLRSSGSTGTR 162 G KP PGS+ P PPG + G P P + G G R Sbjct: 548 DG-----KPGPPGSQGESGRPGPPGPSGPRGQPGVMGFPGPKGNDG------APGKNGER 596 Query: 163 RAPSHPAALQVPYTREGPREPTPPAGPQGFAG 194 P P Q P + G P P GP G G Sbjct: 597 GGPGGPGP-QGPPGKNGETGPQGPPGPTGPGG 627 Score = 43.1 bits (100), Expect = 3e-04 Identities = 67/244 (27%), Positives = 83/244 (34%), Gaps = 36/244 (14%) Query: 52 STGKRRPGHTAPRTQQPKPSGPSSHPREPPLPGAVTGGSLHFQEPPPLGAATAGSRHRQK 111 S GK P + + +P P GPS PR P G + F P A + R Sbjct: 547 SDGKPGPPGSQGESGRPGPPGPSG-PRGQP-------GVMGFPGPKGNDGAPGKNGERGG 598 Query: 112 PPSPGSRHRWEPPPPGAATATGSRHRREPPSPGATTAGSCHLRSSGSTGTRRAPSHPAAL 171 P PG + PPG TG + P PG G TG P P L Sbjct: 599 PGGPGPQ-----GPPGKNGETGPQGPPGPTGPGG---------DKGDTG----PPGPQGL 640 Query: 172 Q-VPYTREGPREPTPPA--GPQGFAGSFCAEGSRRGAEVGWGKLEPQGTRRTGSLGVDSS 228 Q +P T P E P GP+G AG+ A G + A G+ P G L + Sbjct: 641 QGLPGTGGPPGENGKPGEPGPKGDAGAPGAPGGKGDAGAP-GERGPPGLAGAPGLRGGAG 699 Query: 229 PLSETLGPAQCG-SGRRRACSVLHHHCDGIRFRDCHCAPSACPGPTQDPQAGLCTGQEGY 287 P G G G A G++ PGP D G +G Sbjct: 700 PPGPEGGKGAAGPPGPPGAAGT-----PGLQGMPGERGGLGSPGPKGDKGEPGGPGADGV 754 Query: 288 PGTD 291 PG D Sbjct: 755 PGKD 758 Score = 42.0 bits (97), Expect = 8e-04 Identities = 67/257 (26%), Positives = 78/257 (30%), Gaps = 48/257 (18%) Query: 58 PGHTAPR--TQQPKPSGPSSHPRE------PPLPGAV----TGGSLHFQEPPPLGAATAG 105 PG PR T P GP+ P + P LPG + G PP Sbjct: 755 PGKDGPRGPTGPIGPPGPAGQPGDKGEGGAPGLPGIAGPRGSPGERGETGPPGPAGFPGA 814 Query: 106 SRHRQKPPSPGSR----HRWEPPPPGAATATGSRHRREPPSPGATTAGSCHLRSSGSTGT 161 +P G R + E PPG A G PP P G G Sbjct: 815 PGQNGEPGGKGERGAPGEKGEGGPPGVAGPPGGSGPAGPPGP------------QGVKGE 862 Query: 162 RRAPSHPAALQVPYTREGPREPTP-----PAGPQGFAGSFCAEG--SRRGAEVGWGKLEP 214 R +P P A P R P P P GP G G G GA G P Sbjct: 863 RGSPGGPGAAGFPGARGLPGPPGSNGNPGPPGPSGSPGKDGPPGPAGNTGAPGSPGVSGP 922 Query: 215 QGTRRTGSLGVDSSPLSETLGPAQCGSGRRRACSVLHHHCDGIRFRDCHCAPSACPGPTQ 274 +G G G SP ++ GP A GI P PGP Sbjct: 923 KGD--AGQPGEKGSPGAQ--GPPGAPGPLGIA---------GITGARGLAGPPGMPGPRG 969 Query: 275 DPQAGLCTGQEGYPGTD 291 P G+ G PG + Sbjct: 970 SPGPQGVKGESGKPGAN 986 Score = 39.7 bits (91), Expect = 0.004 Identities = 45/162 (27%), Positives = 58/162 (35%), Gaps = 22/162 (13%) Query: 72 GPSSHPREPPLPGAVTGGSLHFQEPPPLG-AATAGSRHRQKPPSPGSRHRWEPPPPGAAT 130 G + P P PG H P P+G A +G R P P GA Sbjct: 1035 GENGSPGAPGAPG-------HPGPPGPVGPAGKSGDRGESGPAGPA----------GAPG 1077 Query: 131 ATGSRHRREPPSPGATTAGSCHLRSSGSTGTRRAPSHPAA--LQVPYTREGPREPTPPAG 188 GSR P P + ++G G R P +P A P ++G PAG Sbjct: 1078 PAGSRGAPGPQGPRGDKGETGERGAAGIKGHRGFPGNPGAPGSPGPAGQQGAIGSPGPAG 1137 Query: 189 PQGFAGSFCAEGSRRGAEVGWGKLEPQGTR-RTGSLGVDSSP 229 P+G G G + G G + P G R G G + SP Sbjct: 1138 PRGPVGPSGPPG-KDGTSGHPGPIGPPGPRGNRGERGSEGSP 1178 Score = 37.0 bits (84), Expect = 0.025 Identities = 65/232 (28%), Positives = 79/232 (34%), Gaps = 23/232 (9%) Query: 72 GPSSHPREPPLPGAV-TGGSLHFQEPPPL--GAATAGSRHRQKPPSPGSRHRWEPPPPGA 128 GP+ P P L GA G P L GA G + P P R E PG Sbjct: 399 GPAGIPGAPGLMGARGPPGPAGANGAPGLRGGAGEPGKNGAKGEPGPRGE-RGEAGIPGV 457 Query: 129 ATATGSRHRR-EPPSPGATTAGSCHLRSSGSTGTR-----RAPSHPAALQVPYTREGPRE 182 A G + P PGA G+ G R R P+ P + G R Sbjct: 458 PGAKGEDGKDGSPGEPGANGL-------PGAAGERGAPGFRGPAGPNGIPGEKGPAGERG 510 Query: 183 PTPPAGPQGFAGSFCAEGSRRGAEVGWGKLEPQGTRRTGSLGVDSSPLSETLGPAQCG-S 241 PAGP+G AG +G G + P G G G S E+ P G S Sbjct: 511 APGPAGPRGAAGEPGRDGVPGGPGMRGMPGSPGGPGSDGKPGPPGSQ-GESGRPGPPGPS 569 Query: 242 GRRRACSVL----HHHCDGIRFRDCHCAPSACPGPTQDPQAGLCTGQEGYPG 289 G R V+ DG ++ PGP P TG +G PG Sbjct: 570 GPRGQPGVMGFPGPKGNDGAPGKNGERGGPGGPGPQGPPGKNGETGPQGPPG 621 Score = 35.4 bits (80), Expect = 0.072 Identities = 46/168 (27%), Positives = 53/168 (31%), Gaps = 29/168 (17%) Query: 48 GLCRSTGKRRPGHTAPRTQQPKPSGPSSHPREPPLPGAV-----------TGGSLHFQEP 96 GL + G R QP P GP P PGA G EP Sbjct: 312 GLPGAAGARGNDGARGSDGQPGPPGPPGTAGFPGSPGAKGEVGPAGSPGSNGAPGQRGEP 371 Query: 97 PPLGAATAGSRHRQKPP----SPGSRHRWEPPPPGAATATGSRHRREPPSPGATTAGSCH 152 P G A G++ PP SPG + E P G A G R PP P Sbjct: 372 GPQGHA--GAQGPPGPPGINGSPGGKG--EMGPAGIPGAPGLMGARGPPGPAGANGAPGL 427 Query: 153 LRSSGSTGTRRAPSHPAALQVPYTREGPREPTPPAGPQGFAGSFCAEG 200 +G G A P GPR AG G G+ +G Sbjct: 428 RGGAGEPGKNGAKGEP----------GPRGERGEAGIPGVPGAKGEDG 465 Score = 35.0 bits (79), Expect = 0.093 Identities = 42/123 (34%), Positives = 49/123 (39%), Gaps = 21/123 (17%) Query: 25 AHTRHSPWVREPEQRHSETGWFRGLCRSTGKR-------RPGHTAPRTQQ-----PKPSG 72 A +R +P + P ETG RG G R PG P QQ P P+G Sbjct: 1079 AGSRGAPGPQGPRGDKGETGE-RGAAGIKGHRGFPGNPGAPGSPGPAGQQGAIGSPGPAG 1137 Query: 73 PSSHPREPPLPGAVTGGSLHFQEPPPLGA-ATAGSR-HRQKPPSPGSRHRWEPPPPGAAT 130 P P P P G S H P P+G G+R R SPG H +P PPG Sbjct: 1138 PRG-PVGPSGPPGKDGTSGH---PGPIGPPGPRGNRGERGSEGSPG--HPGQPGPPGPPG 1191 Query: 131 ATG 133 A G Sbjct: 1192 APG 1194 Score = 34.3 bits (77), Expect = 0.16 Identities = 50/179 (27%), Positives = 60/179 (33%), Gaps = 21/179 (11%) Query: 61 TAPRTQQPK---PSGPSSHPREPPLPG-----AVTG--GSLHFQEPPPLGAATAGSRHRQ 110 TAP T+ P P GP P P +PG + G GS PP + + Sbjct: 93 TAP-TRPPNGQGPQGPKGDPGPPGIPGRNGDPGIPGQPGSPGSPGPPGICESCPTGPQNY 151 Query: 111 KPPSPGSRHRWEPPPPGAATATGSRHRREPPSPGATTAGSCHLRSSGSTGTRRAPSHPAA 170 P + G A G PP P T S H S GS G + P P Sbjct: 152 SPQYDSYDVKSGVAVGGLAGYPGPAGPPGPPGPPGT---SGHPGSPGSPGYQGPPGEPGQ 208 Query: 171 LQVPYTREGPREPTPPAGPQGFAGSFCAEGSRRGAEVGWGKLEPQGTRRTGSLGVDSSP 229 P GP P+GP G G E R G G P G + G G+ P Sbjct: 209 AG-PSGPPGPPGAIGPSGPAGKDG----ESGRPGRPGERGLPGPPGIK--GPAGIPGFP 260 Score = 33.9 bits (76), Expect = 0.21 Identities = 67/267 (25%), Positives = 78/267 (29%), Gaps = 83/267 (31%) Query: 58 PGHTAPRTQQPKPSGPSSHPREPPLPGAVTGGSLHFQEPPPLGAATAGSRHRQKPPSPGS 117 PG P P P G S HP P PG +Q PP G + P P Sbjct: 173 PGPAGP-PGPPGPPGTSGHPGSPGSPG--------YQGPP-------GEPGQAGPSGP-- 214 Query: 118 RHRWEPPPPGAATATGSRHRREPPSPGATTAGSCHLRSSGSTGTRRAPSHPAALQVPYTR 177 P PPGA +G +G G P P +P Sbjct: 215 -----PGPPGAIGPSG---------------------PAGKDGESGRPGRPGERGLP--- 245 Query: 178 EGPREPTPPAGPQGFAG-----SFCAEGSRRGAEVGWGKLE-----PQGTRRTGSLGVDS 227 GP PAG GF G F +G E G L+ P G +G Sbjct: 246 -GPPGIKGPAGIPGFPGMKGHRGFDGRNGEKG-ETGAPGLKGENGLPGENGAPGPMGPRG 303 Query: 228 SPLSETLGPAQCGSGRRRACSVLHHHCDGIRFRDCHCAPSACP---------------GP 272 +P E P G+ R DG R D P P GP Sbjct: 304 AP-GERGRPGLPGAAGARG-------NDGARGSDGQPGPPGPPGTAGFPGSPGAKGEVGP 355 Query: 273 TQDPQAGLCTGQEGYPGTD-HGLFMGP 298 P + GQ G PG H GP Sbjct: 356 AGSPGSNGAPGQRGEPGPQGHAGAQGP 382 >gi|37537692 proline-rich protein BstNI subfamily 4 precursor [Homo sapiens] Length = 247 Score = 55.5 bits (132), Expect = 7e-08 Identities = 44/157 (28%), Positives = 60/157 (38%), Gaps = 28/157 (17%) Query: 54 GKRRPGHTAPRTQQPKPSGPSSHPRE--------PPLPGAVTG----GSLHFQEPPPLGA 101 G+R G P+ P P P P + PP PG G G Q PPP Sbjct: 38 GRRPQGGNQPQRPPPPPGKPQGPPPQGGNQSQGPPPPPGKPEGRPPQGGNQSQGPPP--- 94 Query: 102 ATAGSRHRQKPPSPGSRHRWEPPPPGAATAT----GSRHRREPPSPGATTAGSCHLRSSG 157 + + PP G++ + PPPPG G++ R PP PG G Sbjct: 95 --HPGKPERPPPQGGNQSQGTPPPPGKPERPPPQGGNQSHRPPPPPGKPERPP----PQG 148 Query: 158 STGTRRAPSHPAALQVPYTREGPRE---PTPPAGPQG 191 ++ P HP + P +EG + +PP PQG Sbjct: 149 GNQSQGPPPHPGKPEGPPPQEGNKSRSARSPPGKPQG 185 Score = 54.3 bits (129), Expect = 1e-07 Identities = 42/130 (32%), Positives = 56/130 (43%), Gaps = 24/130 (18%) Query: 64 RTQQPKPSGPSSHPREPPLPGAVTGGSLHFQEPPPLGAATAGSRHRQKPPSPGSRHRWEP 123 + ++P P G + PP PG + PPP G G++ + PP PG R P Sbjct: 98 KPERPPPQGGNQSQGTPPPPGKP-------ERPPPQG----GNQSHRPPPPPGKPER--P 144 Query: 124 PPPGAATATGSRHRREPPSPGATTAGSCHLRSSGSTGTRRAPSHPAALQVPYTREG--PR 181 PP G G++ + PP PG G + S R P P Q P +EG P+ Sbjct: 145 PPQG-----GNQSQGPPPHPG-KPEGPPPQEGNKSRSARSPPGKP---QGPPQQEGNKPQ 195 Query: 182 EPTPPAGPQG 191 P PP PQG Sbjct: 196 GPPPPGKPQG 205 Score = 43.1 bits (100), Expect = 3e-04 Identities = 50/189 (26%), Positives = 68/189 (35%), Gaps = 35/189 (18%) Query: 69 KPSGPSSHPREPPLPGAVTGGSLHFQEPPPLGAATAGSRHRQKPPSP-----------GS 117 +P G + R PP PG G PPP G Q PP P G+ Sbjct: 40 RPQGGNQPQRPPPPPGKPQG-------PPP-----QGGNQSQGPPPPPGKPEGRPPQGGN 87 Query: 118 RHRWEPPPPGAATAT----GSRHRREPPSPGATTAGSCHLRSSGSTGTRRAPSHPAALQV 173 + + PP PG G++ + PP PG G + R P P + Sbjct: 88 QSQGPPPHPGKPERPPPQGGNQSQGTPPPPGKPERPP----PQGGNQSHRPPPPPGKPER 143 Query: 174 PYTREGPREPTPPAGPQGFAGSFCAEGSR-RGAEVGWGKLEPQG-TRRTGSLGVDSSPLS 231 P + G + PP P G EG++ R A GK PQG ++ G+ P Sbjct: 144 PPPQGGNQSQGPPPHPGKPEGPPPQEGNKSRSARSPPGK--PQGPPQQEGNKPQGPPPPG 201 Query: 232 ETLGPAQCG 240 + GP G Sbjct: 202 KPQGPPPAG 210 Score = 37.4 bits (85), Expect = 0.019 Identities = 24/87 (27%), Positives = 32/87 (36%), Gaps = 12/87 (13%) Query: 55 KRRPGHTAPRTQQPKPSGPSSHPREPPLPGAVTGGSLHFQEPPPLGAATAGSRHRQKPPS 114 K R + P Q P + P+ PP PG G PPP AG +Q Sbjct: 172 KSRSARSPPGKPQGPPQQEGNKPQGPPPPGKPQG-------PPP-----AGGNPQQPQAP 219 Query: 115 PGSRHRWEPPPPGAATATGSRHRREPP 141 P + + PPPP ++PP Sbjct: 220 PAGKPQGPPPPPQGGRPPRPAQGQQPP 246 Score = 35.8 bits (81), Expect = 0.055 Identities = 28/104 (26%), Positives = 40/104 (38%), Gaps = 13/104 (12%) Query: 90 SLHFQEPPPLGAATAGSRHRQKPPSPGSRHRWEPPPPGAATATGSRHRREPPSPGATTAG 149 SL P G G Q+PP P + + PPP G G++ + PP PG Sbjct: 28 SLFLISGKPEGRRPQGGNQPQRPPPPPGKPQ-GPPPQG-----GNQSQGPPPPPGKPEGR 81 Query: 150 SCHLRSSGSTGTRRAPSHPAALQVPYTREGPRE---PTPPAGPQ 190 G ++ P HP + P + G + P PP P+ Sbjct: 82 P----PQGGNQSQGPPPHPGKPERPPPQGGNQSQGTPPPPGKPE 121 Score = 32.3 bits (72), Expect = 0.61 Identities = 37/127 (29%), Positives = 42/127 (33%), Gaps = 23/127 (18%) Query: 57 RPGHTAPRTQQPKPSG------PSSHPREPPLPGAVTGG-SLHFQEPP--PLGAATAGSR 107 RP + ++P P G P HP +P P G S + PP P G Sbjct: 133 RPPPPPGKPERPPPQGGNQSQGPPPHPGKPEGPPPQEGNKSRSARSPPGKPQGPPQQEGN 192 Query: 108 HRQKPPSPGSRHRWEPPPPGAATATGSRHRREPPSPGATTAGSCHLRSSGSTGTRRAPSH 167 Q PP PG PPP G P P A AG G R P Sbjct: 193 KPQGPPPPGKPQ--GPPPAGG----------NPQQPQAPPAGKPQGPPPPPQGGR--PPR 238 Query: 168 PAALQVP 174 PA Q P Sbjct: 239 PAQGQQP 245 >gi|41349482 proline-rich protein BstNI subfamily 1 isoform 1 preproprotein [Homo sapiens] Length = 331 Score = 52.8 bits (125), Expect = 4e-07 Identities = 42/135 (31%), Positives = 57/135 (42%), Gaps = 22/135 (16%) Query: 64 RTQQPKPSGPSSHPREPPLPGAVTGGSLHFQEPPPLGAATAGSRH-----RQKPPSPGSR 118 + Q P P G P+ PP PG G PPP G + S+ + PP G++ Sbjct: 178 KPQGPPPQG-GKKPQGPPPPGKPQG-------PPPQGDKSRSSQSPPGKPQGPPPQGGNQ 229 Query: 119 HRWEPPPPG---AATATGSRHRREPPSPGATTAGSCHLRSSGSTGTRRAPSHPAALQVPY 175 + PPPPG G + PP PG + G + ++ A S P Q P Sbjct: 230 PQGPPPPPGKPQGPPPQGGNKPQGPPPPGKPQGPP----AQGGSKSQSARSPPGKPQGPP 285 Query: 176 TREG--PREPTPPAG 188 +EG P+ P PPAG Sbjct: 286 QQEGNNPQGPPPPAG 300 Score = 47.4 bits (111), Expect = 2e-05 Identities = 42/139 (30%), Positives = 56/139 (40%), Gaps = 24/139 (17%) Query: 64 RTQQPKPSGPSSHPREPPLPGAVTGGSLHFQEPPPLGAATAGSRH-----RQKPPSPGSR 118 + Q P P G + P+ PP PG G PPP G + R + PP G++ Sbjct: 117 KPQGPPPQG-GNRPQGPPPPGKPQG-------PPPQGDKSRSPRSPPGKPQGPPPQGGNQ 168 Query: 119 HRWEPPPPG---AATATGSRHRREPPSPGATTAGSCHLRSSGSTGTRRAPSHPAALQVPY 175 + PPPPG G + + PP PG +R + S P Q P Sbjct: 169 PQGPPPPPGKPQGPPPQGGKKPQGPPPPGKPQG-----PPPQGDKSRSSQSPPGKPQGPP 223 Query: 176 TREG--PREPTPPAG-PQG 191 + G P+ P PP G PQG Sbjct: 224 PQGGNQPQGPPPPPGKPQG 242 Score = 47.0 bits (110), Expect = 2e-05 Identities = 44/149 (29%), Positives = 56/149 (37%), Gaps = 22/149 (14%) Query: 54 GKRRPGHTAP--RTQQPKPSGPSSHPREPPLPGAVTGGSLHFQEPPPLGAATAGSRH--- 108 G + G P + Q P P G + P+ PP PG G PPP G + R Sbjct: 44 GNKPQGPPPPPGKPQGPPPQG-GNKPQGPPPPGKPQG-------PPPQGDKSRSPRSPPG 95 Query: 109 --RQKPPSPGSRHRWEPPPPG---AATATGSRHRREPPSPGATTAGSCHLRSSGSTGTRR 163 + PP G++ + PPPPG G + PP PG + S R Sbjct: 96 KPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGNRPQGPPPPGKPQGPP--PQGDKSRSPRS 153 Query: 164 APSHPAALQVPYTREGPREPTPPAG-PQG 191 P P P P+ P PP G PQG Sbjct: 154 PPGKPQG-PPPQGGNQPQGPPPPPGKPQG 181 Score = 45.8 bits (107), Expect = 5e-05 Identities = 45/147 (30%), Positives = 51/147 (34%), Gaps = 19/147 (12%) Query: 54 GKRRPGHTAP-RTQQPKPSGPSSH-PREPP--LPGAVTGGSLHFQEPPPLGAATAGSRHR 109 G R G P + Q P P G S PR PP G G Q PPP G Sbjct: 126 GNRPQGPPPPGKPQGPPPQGDKSRSPRSPPGKPQGPPPQGGNQPQGPPPPPGKPQG---- 181 Query: 110 QKPPSPGSRHRWEPPPPGAATAT---GSRHRREPPSPGATTAGSCHLRSSGSTGTRRAPS 166 PP G + PPPPG G + R PG G + P Sbjct: 182 --PPPQGGKKPQGPPPPGKPQGPPPQGDKSRSSQSPPGKPQGPP----PQGGNQPQGPPP 235 Query: 167 HPAALQVPYTREG--PREPTPPAGPQG 191 P Q P + G P+ P PP PQG Sbjct: 236 PPGKPQGPPPQGGNKPQGPPPPGKPQG 262 Score = 37.0 bits (84), Expect = 0.025 Identities = 36/138 (26%), Positives = 47/138 (34%), Gaps = 21/138 (15%) Query: 55 KRRPGHTAP-RTQQPKPSGPSSHPREPPLPGAVTG----GSLHFQEPPPLGAATAGSRHR 109 K R + P + Q P P G + PP PG G G Q PPP G Sbjct: 208 KSRSSQSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGNKPQGPPPPGKP------- 260 Query: 110 QKPPSPG-SRHRWEPPPPGAATATGSRHRREPPSPGATTAGSCHLRSSGSTGTRRAPSHP 168 Q PP+ G S+ + PPG + P P G+ + G + P P Sbjct: 261 QGPPAQGGSKSQSARSPPGKPQGPPQQEGNNPQGPPPPAGGNPQQPQAPPAGQPQGPPRP 320 Query: 169 AALQVPYTREGPREPTPP 186 +G R PP Sbjct: 321 P--------QGGRPSRPP 330 Score = 34.3 bits (77), Expect = 0.16 Identities = 31/108 (28%), Positives = 36/108 (33%), Gaps = 17/108 (15%) Query: 98 PLGAATAGSRHRQKPPSP----------GSRHRWEPPPPGAATATGSR--HRREPPSPGA 145 P G + G Q PP P G PPPPG + R P SP Sbjct: 36 PQGPSPQGGNKPQGPPPPPGKPQGPPPQGGNKPQGPPPPGKPQGPPPQGDKSRSPRSPPG 95 Query: 146 TTAGSCHLRSSGSTGTRRAPSHPAALQVPYTREG--PREPTPPAGPQG 191 G G + P P Q P + G P+ P PP PQG Sbjct: 96 KPQGP---PPQGGNQPQGPPPPPGKPQGPPPQGGNRPQGPPPPGKPQG 140 >gi|117306167 proline-rich protein BstNI subfamily 3 precursor [Homo sapiens] Length = 309 Score = 50.4 bits (119), Expect = 2e-06 Identities = 41/141 (29%), Positives = 51/141 (36%), Gaps = 36/141 (25%) Query: 57 RPGHTAPRTQQPKPSGPSSHPREPPLPGAVTG----GSLHFQEPPPLGAATAGSRHRQKP 112 RPG + + P P G + PP PG G G Q PPP G P Sbjct: 158 RPG----KPEGPPPQGGNQSQGPPPHPGKPEGPPPQGGNQSQGPPPRPGKPEGP-----P 208 Query: 113 PSPGSRHRWEPPPPGAATATGSRHRREPPSPGATTAGSCHLRSSGSTGTRRAPSHPAALQ 172 P G++ + PP PG S+ +P P P HP Q Sbjct: 209 PQGGNQSQGPPPRPGKPEGPPSQGGNKPQGP---------------------PPHPGKPQ 247 Query: 173 VPYTREG--PREPTPPAGPQG 191 P +EG P+ P PP PQG Sbjct: 248 GPPPQEGNKPQRPPPPGRPQG 268 Score = 47.0 bits (110), Expect = 2e-05 Identities = 39/152 (25%), Positives = 54/152 (35%), Gaps = 25/152 (16%) Query: 54 GKRRPGHTAPRTQQPKPSGPSSHPRE--------PPLPGAVTG----GSLHFQEPPPLGA 101 G+R G P+ P P P P + PP PG G G Q PPP Sbjct: 38 GRRPQGGNQPQRTPPPPGKPEGRPPQGGNQSQGPPPRPGKPEGPPPQGGNQSQGPPPRPG 97 Query: 102 ATAGSRHRQKPPSPGSRHRWEPPPPGAATAT----GSRHRREPPSPGATTAGSCHLRSSG 157 G +PP G++ + PP PG G++ + PP PG G Sbjct: 98 KPEG-----QPPQGGNQSQGPPPRPGKPEGPPPQGGNQSQGPPPRPGKPEGPP----PQG 148 Query: 158 STGTRRAPSHPAALQVPYTREGPREPTPPAGP 189 ++ P P + P + G + PP P Sbjct: 149 GNQSQGPPPRPGKPEGPPPQGGNQSQGPPPHP 180 Score = 42.7 bits (99), Expect = 4e-04 Identities = 35/140 (25%), Positives = 51/140 (36%), Gaps = 17/140 (12%) Query: 58 PGHTAPRTQQPKPSGPSSHPREPPLPGAVTG----GSLHFQEPPPLGAATAGSRHRQKPP 113 P + + + +P G + R PP PG G G Q PPP G PP Sbjct: 29 PSVISGKPEGRRPQGGNQPQRTPPPPGKPEGRPPQGGNQSQGPPPRPGKPEG-----PPP 83 Query: 114 SPGSRHRWEPPPPGAATAT----GSRHRREPPSPGATTAGSCHLRSSGSTGTRRAPSHPA 169 G++ + PP PG G++ + PP PG G ++ P P Sbjct: 84 QGGNQSQGPPPRPGKPEGQPPQGGNQSQGPPPRPGKPEGPP----PQGGNQSQGPPPRPG 139 Query: 170 ALQVPYTREGPREPTPPAGP 189 + P + G + PP P Sbjct: 140 KPEGPPPQGGNQSQGPPPRP 159 Score = 41.2 bits (95), Expect = 0.001 Identities = 29/88 (32%), Positives = 33/88 (37%), Gaps = 9/88 (10%) Query: 57 RPGHTA--PRTQQPKPSGPSSHPREPPLPGAVTGGSLHFQEPP--PLGAATAGSRHRQKP 112 RPG P KP GP HP +P P G PP P G G +Q Sbjct: 221 RPGKPEGPPSQGGNKPQGPPPHPGKPQGPPPQEGNKPQRPPPPGRPQGPPPPGGNPQQPL 280 Query: 113 PSPGSRHRWEPPPPGAATATGSRHRREP 140 P P + + PPPP G R R P Sbjct: 281 PPPAGKPQGPPPPP-----QGGRPHRPP 303 Score = 35.8 bits (81), Expect = 0.055 Identities = 33/131 (25%), Positives = 50/131 (38%), Gaps = 22/131 (16%) Query: 65 TQQPKPSGPSSHP--REPPLPGAVTGGSLHFQEPPPLGAATAGSRHRQKPPSPGSRHRWE 122 +Q+ PS S P R P GG+ + PPP G + +PP G++ + Sbjct: 24 SQEESPSVISGKPEGRRPQ------GGNQPQRTPPPPG------KPEGRPPQGGNQSQGP 71 Query: 123 PPPPGAATAT----GSRHRREPPSPGATTAGSCHLRSSGSTGTRRAPSHPAALQVPYTRE 178 PP PG G++ + PP PG G ++ P P + P + Sbjct: 72 PPRPGKPEGPPPQGGNQSQGPPPRPGKPEGQP----PQGGNQSQGPPPRPGKPEGPPPQG 127 Query: 179 GPREPTPPAGP 189 G + PP P Sbjct: 128 GNQSQGPPPRP 138 Score = 30.8 bits (68), Expect = 1.8 Identities = 25/77 (32%), Positives = 31/77 (40%), Gaps = 12/77 (15%) Query: 72 GPSSHPREPPLPGAVTGGSLHFQEPP----PLGAATAGSRHRQKPPSPGSRHRWEPPPPG 127 GP P +P P + GG+ PP P G Q+PP PG PPPPG Sbjct: 217 GPPPRPGKPEGPPS-QGGNKPQGPPPHPGKPQGPPPQEGNKPQRPPPPGRPQ--GPPPPG 273 Query: 128 AATATGSRHRREPPSPG 144 G+ + PP G Sbjct: 274 -----GNPQQPLPPPAG 285 >gi|116284398 WAS/WASL interacting protein family, member 1 [Homo sapiens] Length = 503 Score = 48.9 bits (115), Expect = 6e-06 Identities = 42/134 (31%), Positives = 47/134 (35%), Gaps = 15/134 (11%) Query: 65 TQQPKPSGPSSHPREPPLPGAVTGGSLHFQEPPPLGAATAGSRHRQKP-PSPGSRHRWEP 123 +Q P P P S P PPLP + +G E P L P PSPG P Sbjct: 304 SQAPPPPPPPSRPGPPPLPPSSSGN----DETPRLPQRNLSLSSSTPPLPSPGRSGPLPP 359 Query: 124 P----PPGAATATGSRHRREPPSPGATTAGSCHLRSSGSTGTRRAPSHPAALQVPYTREG 179 P PP R PP P + GS S P P+ V R G Sbjct: 360 PPSERPPPPVRDPPGRSGPLPPPPPVSRNGST------SRALPATPQLPSRSGVDSPRSG 413 Query: 180 PREPTPPAGPQGFA 193 PR P PP P A Sbjct: 414 PRPPLPPDRPSAGA 427 Score = 42.0 bits (97), Expect = 8e-04 Identities = 49/168 (29%), Positives = 63/168 (37%), Gaps = 38/168 (22%) Query: 57 RPGHTAP--RTQQPKPSGP---SSHPREPPLPG----AVTGGSLH---------FQEPPP 98 RP ++P R P P GP S P PP PG A+ GGS+ F PP Sbjct: 192 RPIQSSPHNRGSPPVPGGPRQPSPGPTPPPFPGNRGTALGGGSIRQSPLSSSSPFSNRPP 251 Query: 99 LGAATAGSRHRQKPPSP---GSR---HRWEPPPPG---------AATATGSRHRREPPSP 143 L + + + PP P G+R HR PPP + + + PP P Sbjct: 252 LPPTPSRALDDKPPPPPPPVGNRPSIHREAVPPPPPQNNKPPVPSTPRPSASSQAPPPPP 311 Query: 144 GATTAGSCHL--RSSGSTGTRRAPSHPAALQ---VPYTREGPREPTPP 186 + G L SSG+ T R P +L P G P PP Sbjct: 312 PPSRPGPPPLPPSSSGNDETPRLPQRNLSLSSSTPPLPSPGRSGPLPP 359 Score = 40.8 bits (94), Expect = 0.002 Identities = 35/136 (25%), Positives = 49/136 (36%), Gaps = 12/136 (8%) Query: 68 PKPSGPSSHPREPPLPGAVTGGSLHFQ---------EPPPLGAATAGSRHRQKPPSPGSR 118 P PS PP P S+H + PP+ + S Q PP P Sbjct: 254 PTPSRALDDKPPPPPPPVGNRPSIHREAVPPPPPQNNKPPVPSTPRPSASSQAPPPPPPP 313 Query: 119 HRWEPPPPGAATATGSRHRREPPSPGATTAGSCHLRSSGSTGTRRAPSH---PAALQVPY 175 R PPP +++ R P + ++ + L S G +G P P ++ P Sbjct: 314 SRPGPPPLPPSSSGNDETPRLPQRNLSLSSSTPPLPSPGRSGPLPPPPSERPPPPVRDPP 373 Query: 176 TREGPREPTPPAGPQG 191 R GP P PP G Sbjct: 374 GRSGPLPPPPPVSRNG 389 Score = 40.4 bits (93), Expect = 0.002 Identities = 42/146 (28%), Positives = 51/146 (34%), Gaps = 16/146 (10%) Query: 63 PRTQQPKPSGPSSHPR-EPPLPGAVTGGSLHFQEPPPL----GAATAGSRHRQKPPSPGS 117 P P+P S H R PP+PG S PPP G A G RQ P S S Sbjct: 186 PVPSTPRPIQSSPHNRGSPPVPGGPRQPSPG-PTPPPFPGNRGTALGGGSIRQSPLSSSS 244 Query: 118 RHRWEPP-PPGAATATGSRHRREPPSPGATTAGSCHLRS-------SGSTGTRRAPSHPA 169 PP PP + A + PP P S H + + P A Sbjct: 245 PFSNRPPLPPTPSRALDD--KPPPPPPPVGNRPSIHREAVPPPPPQNNKPPVPSTPRPSA 302 Query: 170 ALQVPYTREGPREPTPPAGPQGFAGS 195 + Q P P P PP P +G+ Sbjct: 303 SSQAPPPPPPPSRPGPPPLPPSSSGN 328 Score = 38.1 bits (87), Expect = 0.011 Identities = 46/164 (28%), Positives = 56/164 (34%), Gaps = 42/164 (25%) Query: 51 RSTGKRR--PGHTAPRTQQPKPSGPSSHPREPPLPGAVTGGSLHFQEPPPLGAATAGSRH 108 RST R G + P P S+ P PP G F P P H Sbjct: 112 RSTANRDNDSGGSRPPLLPPGGRSTSAKPFSPP------SGPGRFPVPSP--------GH 157 Query: 109 RQKPPSPGSRHRWEPPPPGAATATGSRHRREPPSPGATTAGSCHLRSSGSTGTRRAPSHP 168 R PP P R+R PP P GS+ PP +T R S P Sbjct: 158 RSGPPEP-QRNRMPPPRPD----VGSKPDSIPPPVPST--------------PRPIQSSP 198 Query: 169 AALQVPYTREGPREPTPPAGPQGFAGSFCAEGSRRGAEVGWGKL 212 P GPR+P+P P F G+ RG +G G + Sbjct: 199 HNRGSPPVPGGPRQPSPGPTPPPFPGN-------RGTALGGGSI 235 >gi|38373695 WAS/WASL interacting protein family, member 1 [Homo sapiens] Length = 503 Score = 48.9 bits (115), Expect = 6e-06 Identities = 42/134 (31%), Positives = 47/134 (35%), Gaps = 15/134 (11%) Query: 65 TQQPKPSGPSSHPREPPLPGAVTGGSLHFQEPPPLGAATAGSRHRQKP-PSPGSRHRWEP 123 +Q P P P S P PPLP + +G E P L P PSPG P Sbjct: 304 SQAPPPPPPPSRPGPPPLPPSSSGN----DETPRLPQRNLSLSSSTPPLPSPGRSGPLPP 359 Query: 124 P----PPGAATATGSRHRREPPSPGATTAGSCHLRSSGSTGTRRAPSHPAALQVPYTREG 179 P PP R PP P + GS S P P+ V R G Sbjct: 360 PPSERPPPPVRDPPGRSGPLPPPPPVSRNGST------SRALPATPQLPSRSGVDSPRSG 413 Query: 180 PREPTPPAGPQGFA 193 PR P PP P A Sbjct: 414 PRPPLPPDRPSAGA 427 Score = 42.0 bits (97), Expect = 8e-04 Identities = 49/168 (29%), Positives = 63/168 (37%), Gaps = 38/168 (22%) Query: 57 RPGHTAP--RTQQPKPSGP---SSHPREPPLPG----AVTGGSLH---------FQEPPP 98 RP ++P R P P GP S P PP PG A+ GGS+ F PP Sbjct: 192 RPIQSSPHNRGSPPVPGGPRQPSPGPTPPPFPGNRGTALGGGSIRQSPLSSSSPFSNRPP 251 Query: 99 LGAATAGSRHRQKPPSP---GSR---HRWEPPPPG---------AATATGSRHRREPPSP 143 L + + + PP P G+R HR PPP + + + PP P Sbjct: 252 LPPTPSRALDDKPPPPPPPVGNRPSIHREAVPPPPPQNNKPPVPSTPRPSASSQAPPPPP 311 Query: 144 GATTAGSCHL--RSSGSTGTRRAPSHPAALQ---VPYTREGPREPTPP 186 + G L SSG+ T R P +L P G P PP Sbjct: 312 PPSRPGPPPLPPSSSGNDETPRLPQRNLSLSSSTPPLPSPGRSGPLPP 359 Score = 40.8 bits (94), Expect = 0.002 Identities = 35/136 (25%), Positives = 49/136 (36%), Gaps = 12/136 (8%) Query: 68 PKPSGPSSHPREPPLPGAVTGGSLHFQ---------EPPPLGAATAGSRHRQKPPSPGSR 118 P PS PP P S+H + PP+ + S Q PP P Sbjct: 254 PTPSRALDDKPPPPPPPVGNRPSIHREAVPPPPPQNNKPPVPSTPRPSASSQAPPPPPPP 313 Query: 119 HRWEPPPPGAATATGSRHRREPPSPGATTAGSCHLRSSGSTGTRRAPSH---PAALQVPY 175 R PPP +++ R P + ++ + L S G +G P P ++ P Sbjct: 314 SRPGPPPLPPSSSGNDETPRLPQRNLSLSSSTPPLPSPGRSGPLPPPPSERPPPPVRDPP 373 Query: 176 TREGPREPTPPAGPQG 191 R GP P PP G Sbjct: 374 GRSGPLPPPPPVSRNG 389 Score = 40.4 bits (93), Expect = 0.002 Identities = 42/146 (28%), Positives = 51/146 (34%), Gaps = 16/146 (10%) Query: 63 PRTQQPKPSGPSSHPR-EPPLPGAVTGGSLHFQEPPPL----GAATAGSRHRQKPPSPGS 117 P P+P S H R PP+PG S PPP G A G RQ P S S Sbjct: 186 PVPSTPRPIQSSPHNRGSPPVPGGPRQPSPG-PTPPPFPGNRGTALGGGSIRQSPLSSSS 244 Query: 118 RHRWEPP-PPGAATATGSRHRREPPSPGATTAGSCHLRS-------SGSTGTRRAPSHPA 169 PP PP + A + PP P S H + + P A Sbjct: 245 PFSNRPPLPPTPSRALDD--KPPPPPPPVGNRPSIHREAVPPPPPQNNKPPVPSTPRPSA 302 Query: 170 ALQVPYTREGPREPTPPAGPQGFAGS 195 + Q P P P PP P +G+ Sbjct: 303 SSQAPPPPPPPSRPGPPPLPPSSSGN 328 Score = 38.1 bits (87), Expect = 0.011 Identities = 46/164 (28%), Positives = 56/164 (34%), Gaps = 42/164 (25%) Query: 51 RSTGKRR--PGHTAPRTQQPKPSGPSSHPREPPLPGAVTGGSLHFQEPPPLGAATAGSRH 108 RST R G + P P S+ P PP G F P P H Sbjct: 112 RSTANRDNDSGGSRPPLLPPGGRSTSAKPFSPP------SGPGRFPVPSP--------GH 157 Query: 109 RQKPPSPGSRHRWEPPPPGAATATGSRHRREPPSPGATTAGSCHLRSSGSTGTRRAPSHP 168 R PP P R+R PP P GS+ PP +T R S P Sbjct: 158 RSGPPEP-QRNRMPPPRPD----VGSKPDSIPPPVPST--------------PRPIQSSP 198 Query: 169 AALQVPYTREGPREPTPPAGPQGFAGSFCAEGSRRGAEVGWGKL 212 P GPR+P+P P F G+ RG +G G + Sbjct: 199 HNRGSPPVPGGPRQPSPGPTPPPFPGN-------RGTALGGGSI 235 >gi|209571537 proline-rich protein BstNI subfamily 2 [Homo sapiens] Length = 416 Score = 48.5 bits (114), Expect = 8e-06 Identities = 44/136 (32%), Positives = 54/136 (39%), Gaps = 23/136 (16%) Query: 64 RTQQPKPSGPSSHPREPPLPGAVTGG-------SLHFQEPP--PLGAATAGSRHRQKPPS 114 + Q P P G + P+ PP PG G S + PP P G G Q PP Sbjct: 262 KPQGPPPQG-GNKPQGPPPPGKPQGPPPQGGSKSRSSRSPPGKPQGPPPQGGNQPQGPPP 320 Query: 115 PGSRHRWEPPPPGAATATGSRHRREPPSPGATTAGSCHLRSSGSTGTRRAPSHPAALQVP 174 P + + PPP G G PP PG G + +R A S P Q P Sbjct: 321 PPGKPQ-GPPPQGGNKPQG------PPPPGKPQGPP----PQGGSKSRSARSPPGKPQGP 369 Query: 175 YTREG--PREPTPPAG 188 +EG P+ P PPAG Sbjct: 370 PQQEGNNPQGPPPPAG 385 Score = 48.1 bits (113), Expect = 1e-05 Identities = 43/135 (31%), Positives = 48/135 (35%), Gaps = 17/135 (12%) Query: 62 APRTQQPKPSGPSSHPREPPLPGAVTGGSLHFQEPP---PLGAATAGSRHRQKPPSPGSR 118 AP KP GP S P +P P G PP P G G Q PP PG Sbjct: 39 APPQGGNKPQGPPSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGNKPQGPPPPGKP 98 Query: 119 HRWEPPPPGAATATGSRHRREPPSPGATTAGSCHLRSSGSTGTRRAPSHPAALQVPYTRE 178 PPP G + R P SP G G + P P Q P + Sbjct: 99 Q--GPPPQGDKS-------RSPRSPPGKPQGP---PPQGGNQPQGPPPPPGKPQGPPPQG 146 Query: 179 G--PREPTPPAGPQG 191 G P+ P PP PQG Sbjct: 147 GNKPQGPPPPGKPQG 161 Score = 47.8 bits (112), Expect = 1e-05 Identities = 45/156 (28%), Positives = 58/156 (37%), Gaps = 36/156 (23%) Query: 64 RTQQPKPSGPSSHPREPPLPGAVTGGSLHFQEPPPLG------AATAGSRHRQKPPSPGS 117 + Q P P G + P+ PP PG G PPP G A + + + PP G+ Sbjct: 200 KPQGPPPQG-GNKPQGPPPPGKPQG-------PPPQGDNKSQSARSPPGKPQGPPPQGGN 251 Query: 118 RHRWEPPPPGAATAT---GSRHRREPPSPGATTA----GSCHLRSS-------------G 157 + + PPPPG G + PP PG G RSS G Sbjct: 252 QPQGPPPPPGKPQGPPPQGGNKPQGPPPPGKPQGPPPQGGSKSRSSRSPPGKPQGPPPQG 311 Query: 158 STGTRRAPSHPAALQVPYTREG--PREPTPPAGPQG 191 + P P Q P + G P+ P PP PQG Sbjct: 312 GNQPQGPPPPPGKPQGPPPQGGNKPQGPPPPGKPQG 347 Score = 47.0 bits (110), Expect = 2e-05 Identities = 45/161 (27%), Positives = 59/161 (36%), Gaps = 29/161 (18%) Query: 56 RRPGHTAPRTQQPKPSGPSSHPREPPLPGAVTG----GSLHFQEPPPLG----------- 100 R P + Q P P G + PP PG G G Q PPP G Sbjct: 109 RSPRSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGNKPQGPPPPGKPQGPPPQGDN 168 Query: 101 ----AATAGSRHRQKPPSPGSRHRWEPPPPG---AATATGSRHRREPPSPGATTAGSCHL 153 + + + + PP G++ + PPPPG G + PP PG Sbjct: 169 KSRSSRSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGNKPQGPPPPGKPQGPP--- 225 Query: 154 RSSGSTGTRRAPSHPAALQVPYTREG--PREPTPPAG-PQG 191 G ++ A S P Q P + G P+ P PP G PQG Sbjct: 226 -PQGDNKSQSARSPPGKPQGPPPQGGNQPQGPPPPPGKPQG 265 Score = 41.6 bits (96), Expect = 0.001 Identities = 36/137 (26%), Positives = 47/137 (34%), Gaps = 19/137 (13%) Query: 55 KRRPGHTAP-RTQQPKPSGPSSHPREPPLPGAVTG----GSLHFQEPPPLGAATAGSRHR 109 K R + P + Q P P G + PP PG G G Q PPP G + + Sbjct: 293 KSRSSRSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGNKPQGPPPPG------KPQ 346 Query: 110 QKPPSPGSRHRWEPPPPGAATATGSRHRREPPSPGATTAGSCHLRSSGSTGTRRAPSHPA 169 PP GS+ R PPG + P P G+ + G + P P Sbjct: 347 GPPPQGGSKSRSARSPPGKPQGPPQQEGNNPQGPPPPAGGNPQQPQAPPAGQPQGPPRPP 406 Query: 170 ALQVPYTREGPREPTPP 186 +G R PP Sbjct: 407 --------QGGRPSRPP 415 Score = 37.4 bits (85), Expect = 0.019 Identities = 33/109 (30%), Positives = 39/109 (35%), Gaps = 18/109 (16%) Query: 98 PLGAATAGSRHRQKPPSP-----------GSRHRWEPPPPG---AATATGSRHRREPPSP 143 P GA G Q PPSP G++ + PPPPG G + PP P Sbjct: 36 PQGAPPQGGNKPQGPPSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGNKPQGPPPP 95 Query: 144 GATTAGSCHLRSSGSTGTRRAPSHPAALQVPYTREGPREPTPPAG-PQG 191 G + S R P P P P+ P PP G PQG Sbjct: 96 GKPQGPP--PQGDKSRSPRSPPGKPQG-PPPQGGNQPQGPPPPPGKPQG 141 >gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens] Length = 1464 Score = 47.8 bits (112), Expect = 1e-05 Identities = 75/254 (29%), Positives = 90/254 (35%), Gaps = 67/254 (26%) Query: 47 RGLCRSTGKRRPGHTAPR--------TQQPKPSGPSSHPREPPLPGAVTGGSLHFQEPPP 98 RGL G RPG P T P GP+ P PGAV Sbjct: 304 RGLPGERG--RPGAPGPAGARGNDGATGAAGPPGPTGPAGPPGFPGAVGAKG-------- 353 Query: 99 LGAATAGSRHRQKPPSPGSRHRWEPPPPGAATATG-SRHRREPPSPGATTAGSCHLRSSG 157 A G R + P R EP PPG A A G + + PGA A +G Sbjct: 354 -EAGPQGPRGSEGPQGV----RGEPGPPGPAGAAGPAGNPGADGQPGAKGA-------NG 401 Query: 158 STGTRRAPSHPAALQVPYTREGPREPTPPAGPQGFAGSFCAEGSRRGAEVGWGKLEPQGT 217 + G AP P A GP+ P P GP+G +G A GS+ + G K EP Sbjct: 402 APGIAGAPGFPGARGP----SGPQGPGGPPGPKGNSGEPGAPGSK--GDTG-AKGEP--- 451 Query: 218 RRTGSLGVDSSPLSETLGPAQCGSGRRRACSVLHHHCDGIRFRDCHCAPSACPGPTQDPQ 277 G +GV P GPA G+R A P+ PGP P Sbjct: 452 ---GPVGVQGPP-----GPAG-EEGKRGARG--------------EPGPTGLPGP---PG 485 Query: 278 AGLCTGQEGYPGTD 291 G G+PG D Sbjct: 486 ERGGPGSRGFPGAD 499 Score = 47.4 bits (111), Expect = 2e-05 Identities = 53/179 (29%), Positives = 60/179 (33%), Gaps = 32/179 (17%) Query: 68 PKPSGPSSHPREPPLPGAVTGGSLHFQEPPPLGAATAGSRHRQKPPSPGSRHRWEPPP-- 125 P P G P EP PGA G + + PP KP PG R P Sbjct: 196 PGPQGFQGPPGEPGEPGA--SGPMGPRGPPGPPGKNGDDGEAGKPGRPGERGPPGPQGAR 253 Query: 126 --PGAATATGSRHRR-------------------EPPSPGATTAGSCHLRSSGSTGTRRA 164 PG A G + R EP SPG A + G G R Sbjct: 254 GLPGTAGLPGMKGHRGFSGLDGAKGDAGPAGPKGEPGSPGENGAPG-QMGPRGLPGERGR 312 Query: 165 PSHPAALQVPYT-----REGPREPTPPAGPQGFAGSFCAEGSRRGAEVGWGKLEPQGTR 218 P P GP PT PAGP GF G+ A+G G + G PQG R Sbjct: 313 PGAPGPAGARGNDGATGAAGPPGPTGPAGPPGFPGAVGAKG-EAGPQGPRGSEGPQGVR 370 Score = 42.7 bits (99), Expect = 4e-04 Identities = 43/155 (27%), Positives = 53/155 (34%), Gaps = 13/155 (8%) Query: 47 RGLCRSTGKRRPGHTAPRTQQPKPSGPSSHPREPPLPG-AVTGGSLHFQEPPPLGAATAG 105 RG + G P A P P+GP P E PG A G+ P + G Sbjct: 493 RGFPGADGVAGPKGPAGERGSPGPAGPKGSPGEAGRPGEAGLPGAKGLTGSP----GSPG 548 Query: 106 SRHRQKPPSPGSRHRWEPPPPGAATATGSRHRREPPSPGATTAGSCHLRSSGSTGTRRAP 165 + PP P + P PPG A G P P G G R P Sbjct: 549 PDGKTGPPGPAGQD-GRPGPPGPPGARGQAGVMGFPGPKGAAG------EPGKAGERGVP 601 Query: 166 SHPAALQVPYTREGPREPTPPAGPQGFAGSFCAEG 200 P A+ P ++G P GP G AG +G Sbjct: 602 GPPGAVG-PAGKDGEAGAQGPPGPAGPAGERGEQG 635 Score = 41.6 bits (96), Expect = 0.001 Identities = 48/153 (31%), Positives = 53/153 (34%), Gaps = 17/153 (11%) Query: 58 PGHTAPRTQQPKPSGPSSHPREPPLPGAVTGGSLHFQEPPPLGAATAGSRHRQKPPSPGS 117 PG A R P PSG ++ P PP P GG E P G G PP P Sbjct: 877 PG-AAGRVGPPGPSG-NAGPPGPPGPAGKEGGKGPRGETGPAGRP--GEVGPPGPPGPAG 932 Query: 118 RHRWEPPPPGAATATGSRHRREPPSPGATTAGSCHLRSSGSTGTRRAPSHPA-----ALQ 172 + P G A A G+ P P + G G R P P Q Sbjct: 933 E-KGSPGADGPAGAPGT------PGPQGIAGQRGVVGLPGQRGERGFPGLPGPSGEPGKQ 985 Query: 173 VPYTREGPREPTPPAGPQGFAGSFCAEGSRRGA 205 P G R P P GP G AG E R GA Sbjct: 986 GPSGASGERGPPGPMGPPGLAGP-PGESGREGA 1017 Score = 41.2 bits (95), Expect = 0.001 Identities = 54/207 (26%), Positives = 67/207 (32%), Gaps = 42/207 (20%) Query: 97 PPLGAATAGSRHRQKPPSPGSRHRWEPPPPGAATATGSRHRREPPSPGATTAGSCHLRSS 156 PP A G + P P P GA A G R PP P + Sbjct: 771 PPGPAGAPGDKGESGPSGPAG-------PTGARGAPGDRGEPGPPGPAGFAGPP---GAD 820 Query: 157 GSTGTRRAPSHPAALQVPYTREGPREPTPPAGPQGFAGSFCAEGSR-----------RGA 205 G G + P A GP P PAGP G G+ A G++ G Sbjct: 821 GQPGAKGEPGDAGAKG----DAGPPGPAGPAGPPGPIGNVGAPGAKGARGSAGPPGATGF 876 Query: 206 EVGWGKLEPQGTRRTGSLGVDSSPLSETLGPA--QCGSGRRRACSVLHHHCDGIRFRDCH 263 G++ P G +G+ G P GPA + G G R G R Sbjct: 877 PGAAGRVGPPGP--SGNAGPPGPP-----GPAGKEGGKGPRGE--------TGPAGRPGE 921 Query: 264 CAPSACPGPTQDPQAGLCTGQEGYPGT 290 P PGP + + G G PGT Sbjct: 922 VGPPGPPGPAGEKGSPGADGPAGAPGT 948 Score = 41.2 bits (95), Expect = 0.001 Identities = 66/238 (27%), Positives = 82/238 (34%), Gaps = 22/238 (9%) Query: 48 GLCRSTGKRR-PGHTAPRTQQPKPSGPSSHPREPPLPGAVTGGSLHFQEPPPLGAATAGS 106 GL G+R PG P + +P GPS E PG + PP L S Sbjct: 962 GLPGQRGERGFPGLPGP-SGEPGKQGPSGASGERGPPGPMG--------PPGLAGPPGES 1012 Query: 107 RHRQKPPSPGSRHRWEPPPPGAATATGSRHRREPP-SPGATTAGSCHLRSSGSTGTRRAP 165 P + GS R PGA G PP +PGA A + +G +G R Sbjct: 1013 GREGAPGAEGSPGR--DGSPGAKGDRGETGPAGPPGAPGAPGAPG-PVGPAGKSGDR-GE 1068 Query: 166 SHPAALQVPYTREGPREPTPPAGPQGFAGSFCAEGSR-----RGAEVGWGKLEPQGTRRT 220 + PA P G R P P GP+G G +G R RG G P G+ Sbjct: 1069 TGPAGPAGPVGPVGARGPAGPQGPRGDKGETGEQGDRGIKGHRGFSGLQGPPGPPGSPGE 1128 Query: 221 GSLGVDSSPLSETLGPAQCGSGRRRACSVLHHHC--DGIRFRDCHCAPSACPGPTQDP 276 S P P G+ + + L G R R P PGP P Sbjct: 1129 QGPSGASGPAGPRGPPGSAGAPGKDGLNGLPGPIGPPGPRGRTGDAGPVGPPGPPGPP 1186 Score = 35.8 bits (81), Expect = 0.055 Identities = 68/274 (24%), Positives = 80/274 (29%), Gaps = 62/274 (22%) Query: 58 PGHTAPRTQQPK--PSGPSSHPREPPLPGAVTGGSLHFQEPPPLG-------AATAGSRH 108 PG P Q P GP + EP PG+ G + EP P+G A G R Sbjct: 412 PGARGPSGPQGPGGPPGPKGNSGEPGAPGS-KGDTGAKGEPGPVGVQGPPGPAGEEGKRG 470 Query: 109 RQKPPSP-----------GSRHRWEPPPPGAATATGSRHRREPPSPGATTAGSCHLRSSG 157 + P P G R P G A G R P P G Sbjct: 471 ARGEPGPTGLPGPPGERGGPGSRGFPGADGVAGPKGPAGERGSPGPAGPKGSPGEAGRPG 530 Query: 158 STGTRRA-----------PSHPAALQVPYTREG-PREPTPP-----AGPQGFAGSFCAEG 200 G A P P ++G P P PP AG GF G A G Sbjct: 531 EAGLPGAKGLTGSPGSPGPDGKTGPPGPAGQDGRPGPPGPPGARGQAGVMGFPGPKGAAG 590 Query: 201 S-----RRGAEVGWGKLEPQGTRRTGSLGVDSSPLSETLGPAQCGSGRRRACSVLHHHCD 255 RG G + P G + G G P GPA R Sbjct: 591 EPGKAGERGVPGPPGAVGPAG--KDGEAGAQGPP-----GPAGPAGERGEQGPAGSPGFQ 643 Query: 256 GIRFRDCHCAPSACPGPTQDPQAGLCTGQEGYPG 289 G+ PGP P G++G PG Sbjct: 644 GL------------PGPAGPPGEAGKPGEQGVPG 665 Score = 34.7 bits (78), Expect = 0.12 Identities = 42/148 (28%), Positives = 49/148 (33%), Gaps = 34/148 (22%) Query: 58 PGHTAPRTQQPKPSGPSSH--PREPPLPGAVTGGSLHFQEPPPLG-AATAGSRHRQKPPS 114 PG+ + P P S P +PG L P P G AG + P Sbjct: 703 PGNDGAKGDAGAPGAPGSQGAPGLQGMPGERGAAGL----PGPKGDRGDAGPKGADGSPG 758 Query: 115 PGSRHRWEPP--PPGAATATGSRHRREPPSPGATTAGSCHLRSSGSTGTRRAPSHPAALQ 172 P PPG A A G + P P +G TG R AP Sbjct: 759 KDGVRGLTGPIGPPGPAGAPGDKGESGPSGP------------AGPTGARGAPGDRG--- 803 Query: 173 VPYTREGPREPTPPAGPQGFAGSFCAEG 200 EP PP GP GFAG A+G Sbjct: 804 ---------EPGPP-GPAGFAGPPGADG 821 Score = 33.1 bits (74), Expect = 0.36 Identities = 50/191 (26%), Positives = 66/191 (34%), Gaps = 42/191 (21%) Query: 68 PKPSGPSSHPRE------PPLPGAVTGGSLHFQ---EPPPLGAATAGSRHRQKPP-SPGS 117 P P G + P + P PGAV + + PP A AG R Q P SPG Sbjct: 583 PGPKGAAGEPGKAGERGVPGPPGAVGPAGKDGEAGAQGPPGPAGPAGERGEQGPAGSPGF 642 Query: 118 RHRWEPPPP----------------GAATATGSRHRR---------EPPSPGATTAGSCH 152 + P P GA +G+R R PP P + Sbjct: 643 QGLPGPAGPPGEAGKPGEQGVPGDLGAPGPSGARGERGFPGERGVQGPPGPAGPRGANGA 702 Query: 153 LRSSGSTGTRRAPSHPAALQVPYTREGPREP-----TPPAGPQGFAGSFCAEGS--RRGA 205 + G+ G AP P + P + P E P G +G AG A+GS + G Sbjct: 703 PGNDGAKGDAGAPGAPGSQGAPGLQGMPGERGAAGLPGPKGDRGDAGPKGADGSPGKDGV 762 Query: 206 EVGWGKLEPQG 216 G + P G Sbjct: 763 RGLTGPIGPPG 773 >gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Homo sapiens] Length = 1487 Score = 47.8 bits (112), Expect = 1e-05 Identities = 60/208 (28%), Positives = 71/208 (34%), Gaps = 43/208 (20%) Query: 57 RPGHTAPRTQQPKPSGPSSHPREPPLPGAVTGGSLHFQEPPPLGAA--TAGSRHRQKPPS 114 +PG P P P GP+ P P PGA E P GA R +P + Sbjct: 349 QPGPAGP----PGPVGPAGGPGFPGAPGAKG-------EAGPTGARGPEGAQGPRGEPGT 397 Query: 115 PGSRH----------------RWEPPPPGAATATGSRHRREPPSPGATTAGSCHLRSSGS 158 PGS + PG A A G R PP P T L G Sbjct: 398 PGSPGPAGASGNPGTDGIPGAKGSAGAPGIAGAPGFPGPRGPPGPQGATGP---LGPKGQ 454 Query: 159 TGTRRAPSHPAALQVPYTREGPREPTPPAGPQGFAGSFCAEGSR--RGAEVGWGKLEPQG 216 TG +GP+ PAGPQG G EG R RG G G + P G Sbjct: 455 TGEPGIAGFKG-------EQGPKGEPGPAGPQGAPGPAGEEGKRGARGEPGGVGPIGPPG 507 Query: 217 TRRTGSLGVDSSPLSETLGPAQCGSGRR 244 R G+ G P + L + G R Sbjct: 508 ER--GAPGNRGFPGQDGLAGPKGAPGER 533 Score = 40.8 bits (94), Expect = 0.002 Identities = 64/245 (26%), Positives = 75/245 (30%), Gaps = 41/245 (16%) Query: 68 PKPSGPSSHPREPPLPGAVTGGS-LHFQEPPPLGAATAGSRHRQKPPSPGSRHRWEPP-P 125 P P GPS P P P VTG + PP G+ R PP GS PP P Sbjct: 863 PGPQGPSGAPG-PQGPTGVTGPKGARGAQGPPGATGFPGAAGRVGPP--GSNGNPGPPGP 919 Query: 126 PGAATATGSRHRREPPSPGATTAGSCHLRSSGSTGTRRAPSHPAALQVPYTREGPREPTP 185 PG + G + R P +G G + P +GP Sbjct: 920 PGPSGKDGPKGARGDSGPPGRAGEPGLQGPAGPPGEKGEPGD----------DGPSGAEG 969 Query: 186 PAGPQGFAGSF--------------------CAEGSRRGAEVGWGKLEPQG-TRRTGSLG 224 P GPQG AG E ++GA G P G G G Sbjct: 970 PPGPQGLAGQRGIVGLPGQRGERGFPGLPGPSGEPGKQGAPGASGDRGPPGPVGPPGLTG 1029 Query: 225 VDSSPLSETLGPAQCGSGRRRACSVLHHHCDGIRFRDCHCAPSACPGPTQDPQAGLCTGQ 284 P E A GR A V G R PGP P TG+ Sbjct: 1030 PAGEPGREGSPGADGPPGRDGAAGV-----KGDRGETGAVGAPGAPGPPGSPGPAGPTGK 1084 Query: 285 EGYPG 289 +G G Sbjct: 1085 QGDRG 1089 Score = 39.7 bits (91), Expect = 0.004 Identities = 75/285 (26%), Positives = 96/285 (33%), Gaps = 55/285 (19%) Query: 41 SETGWFRGLCRSTGKRRPGHTAPRTQQPKPSGPSSHPREPPLPGAVTGGSLHFQEPP-PL 99 ++ G +G G R P A P P G +P EP PG G + + PP P Sbjct: 194 AQLGVMQGPMGPMGPRGPPGPAGA---PGPQGFQGNPGEPGEPGV--SGPMGPRGPPGPP 248 Query: 100 G-------AATAGSRHRQKPPSPGSRHRWEPPPPGAATATGSRHRREPPSPGAT-TAGSC 151 G A G + PP P R P PG G HR P GA AG+ Sbjct: 249 GKPGDDGEAGKPGKAGERGPPGPQGA-RGFPGTPGLPGVKG--HRGYPGLDGAKGEAGAP 305 Query: 152 HLRS-SGSTGTRRAPSHPAALQVPYTR-----------------EGPREPTPPAGPQGFA 193 ++ SGS G +P +P R GP P P GP G Sbjct: 306 GVKGESGSPGENGSPGPMGPRGLPGERGRTGPAGAAGARGNDGQPGPAGPPGPVGPAGGP 365 Query: 194 GSFCAEGSR--------RGAEVGWG-KLEPQGTRRTGSLGVDSSPLSETLGPAQCGSGRR 244 G A G++ RG E G + EP G G +P ++ + A+ +G Sbjct: 366 GFPGAPGAKGEAGPTGARGPEGAQGPRGEPGTPGSPGPAGASGNPGTDGIPGAKGSAG-- 423 Query: 245 RACSVLHHHCDGIRFRDCHCAPSACPGPTQDPQAGLCTGQEGYPG 289 GI P PGP GQ G PG Sbjct: 424 ---------APGIAGAPGFPGPRGPPGPQGATGPLGPKGQTGEPG 459 Score = 39.3 bits (90), Expect = 0.005 Identities = 45/160 (28%), Positives = 55/160 (34%), Gaps = 32/160 (20%) Query: 63 PRTQQPK----PSGPSSHPREPPLPGAVTGGSLHFQEPPPLGAATAGSRHRQKPPSPGSR 118 P T PK P+GP P L G P G + + P Sbjct: 725 PGTDGPKGASGPAGPPGAQGPPGLQGMPGERGAAGIAGPKGDRGDVGEKGPEGAPGKDGG 784 Query: 119 HRWEPP--PPGAATATGSRHRREPPSPGATTAGSCHLRSSGSTGTRRAPSHPAALQVPYT 176 P PPG A A G + PP P +GS G R AP Sbjct: 785 RGLTGPIGPPGPAGANGEKGEVGPPGP------------AGSAGARGAP----------- 821 Query: 177 REGPREPTPPAGPQGFAGSFCAEGSRRGAEVGWGKLEPQG 216 G R T P GP GFAG A+G + GA+ G+ +G Sbjct: 822 --GERGETGPPGPAGFAGPPGADG-QPGAKGEQGEAGQKG 858 Score = 38.9 bits (89), Expect = 0.006 Identities = 55/198 (27%), Positives = 70/198 (35%), Gaps = 29/198 (14%) Query: 57 RPGHTAPRTQQ--------PKPSGPSSHPR---EPPLPGAVTGGSLHFQEP------PPL 99 RPG P+ + P P G + P E LPGA L ++ PP Sbjct: 586 RPGPPGPQGARGQPGVMGFPGPKGANGEPGKAGEKGLPGAPGLRGLPGKDGETGAAGPPG 645 Query: 100 GAATAGSRHRQKPPSPGSRHRWEPPPPGAATATGSRHRREPPSPGATTAGSCHLRSSGST 159 A AG R Q P P S + P PPG G + P G Sbjct: 646 PAGPAGERGEQGAPGP-SGFQGLPGPPGPPGEGGKPGDQGVPGEAGAPGLVGPRGERGFP 704 Query: 160 GTRRAP-----SHPAALQVPYTREGPREPTPPAGPQGFAGSFCAEG--SRRGAEVGWGKL 212 G R +P P L +GP+ + PAGP G G +G RGA G Sbjct: 705 GERGSPGAQGLQGPRGLPGTPGTDGPKGASGPAGPPGAQGPPGLQGMPGERGAA---GIA 761 Query: 213 EPQGTR-RTGSLGVDSSP 229 P+G R G G + +P Sbjct: 762 GPKGDRGDVGEKGPEGAP 779 Score = 36.6 bits (83), Expect = 0.032 Identities = 60/233 (25%), Positives = 72/233 (30%), Gaps = 35/233 (15%) Query: 68 PKPSGPSSHPREPPLPG----AVTGGSLHFQEPPPLGAATA--GSRHRQKPPSPGSR--- 118 P P GP P P L G + GG LG G + PP P Sbjct: 161 PGPPGPPGPPGPPGLGGNFAAQMAGGFDEKAGGAQLGVMQGPMGPMGPRGPPGPAGAPGP 220 Query: 119 --HRWEPPPPGAATATGSRHRREPPSPGATTAGSCHLRSSGSTGTRRAPSHPAALQVPYT 176 + P PG +G R PP P G G R P A P T Sbjct: 221 QGFQGNPGEPGEPGVSGPMGPRGPPGPPGKPGDDGEAGKPGKAGERGPPGPQGARGFPGT 280 Query: 177 REGPREPTPPAGPQGFAGSFCAEGSRRGAEVGWGKLEPQGTRRTGSLGVDSSPLSETLGP 236 P G +G+ G A+G E G P +GS G + SP +GP Sbjct: 281 PGLP----GVKGHRGYPGLDGAKG-----EAG----APGVKGESGSPGENGSP--GPMGP 325 Query: 237 AQCGSGRRRACSVLHHHCDGIRFRDCHCAPSACPGPTQDPQAGLCTGQEGYPG 289 R R G R D P+ PGP G G+PG Sbjct: 326 RGLPGERGRTGPA---GAAGARGNDGQPGPAGPPGPVGP------AGGPGFPG 369 Score = 31.6 bits (70), Expect = 1.0 Identities = 26/89 (29%), Positives = 32/89 (35%), Gaps = 10/89 (11%) Query: 140 PPSPGATTAGSCHLRSSGSTGTRRAPSHPAALQVPYTREGPREPTPPA--GPQGFAGSFC 197 PP P G G + AP P T P P PP GP G G+F Sbjct: 121 PPGPQGPAGEQGPRGDRGDKGEKGAPGPRGRDGEPGTPGNPGPPGPPGPPGPPGLGGNFA 180 Query: 198 A------EGSRRGAEVG--WGKLEPQGTR 218 A + GA++G G + P G R Sbjct: 181 AQMAGGFDEKAGGAQLGVMQGPMGPMGPR 209 Score = 28.9 bits (63), Expect = 6.7 Identities = 46/179 (25%), Positives = 57/179 (31%), Gaps = 50/179 (27%) Query: 58 PGHTAPRTQQPKPSGPSSHPREPPLPGAVTGGSLHFQEPPPLG-AATAGSRHRQKPPSPG 116 PG P P P+GP+ + GA P+G + AG+R Q P P Sbjct: 1067 PGAPGP-PGSPGPAGPTGKQGDRGEAGA----------QGPMGPSGPAGARGIQGPQGPR 1115 Query: 117 SRHRWEPPPPGAATATGSRHRREPPSPGATTAGSCHLRSSGSTGTRRAPSHPA-----AL 171 + E PG G R G TG + P P Sbjct: 1116 G-DKGEAGEPGERGLKGHR---------------------GFTGLQGLPGPPGPSGDQGA 1153 Query: 172 QVPYTREGPREPTPPAGPQGFAGSFCAEGSRRGAEVGWGKLEPQGTR-RTGSLGVDSSP 229 P GPR P P GP G + GA G + P G R R+G G P Sbjct: 1154 SGPAGPSGPRGPPGPVGPSG----------KDGANGIPGPIGPPGPRGRSGETGPAGPP 1202 >gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Homo sapiens] Length = 1418 Score = 47.8 bits (112), Expect = 1e-05 Identities = 60/208 (28%), Positives = 71/208 (34%), Gaps = 43/208 (20%) Query: 57 RPGHTAPRTQQPKPSGPSSHPREPPLPGAVTGGSLHFQEPPPLGAA--TAGSRHRQKPPS 114 +PG P P P GP+ P P PGA E P GA R +P + Sbjct: 280 QPGPAGP----PGPVGPAGGPGFPGAPGAKG-------EAGPTGARGPEGAQGPRGEPGT 328 Query: 115 PGSRH----------------RWEPPPPGAATATGSRHRREPPSPGATTAGSCHLRSSGS 158 PGS + PG A A G R PP P T L G Sbjct: 329 PGSPGPAGASGNPGTDGIPGAKGSAGAPGIAGAPGFPGPRGPPGPQGATGP---LGPKGQ 385 Query: 159 TGTRRAPSHPAALQVPYTREGPREPTPPAGPQGFAGSFCAEGSR--RGAEVGWGKLEPQG 216 TG +GP+ PAGPQG G EG R RG G G + P G Sbjct: 386 TGEPGIAGFKG-------EQGPKGEPGPAGPQGAPGPAGEEGKRGARGEPGGVGPIGPPG 438 Query: 217 TRRTGSLGVDSSPLSETLGPAQCGSGRR 244 R G+ G P + L + G R Sbjct: 439 ER--GAPGNRGFPGQDGLAGPKGAPGER 464 Score = 40.8 bits (94), Expect = 0.002 Identities = 64/245 (26%), Positives = 75/245 (30%), Gaps = 41/245 (16%) Query: 68 PKPSGPSSHPREPPLPGAVTGGS-LHFQEPPPLGAATAGSRHRQKPPSPGSRHRWEPP-P 125 P P GPS P P P VTG + PP G+ R PP GS PP P Sbjct: 794 PGPQGPSGAPG-PQGPTGVTGPKGARGAQGPPGATGFPGAAGRVGPP--GSNGNPGPPGP 850 Query: 126 PGAATATGSRHRREPPSPGATTAGSCHLRSSGSTGTRRAPSHPAALQVPYTREGPREPTP 185 PG + G + R P +G G + P +GP Sbjct: 851 PGPSGKDGPKGARGDSGPPGRAGEPGLQGPAGPPGEKGEPGD----------DGPSGAEG 900 Query: 186 PAGPQGFAGSF--------------------CAEGSRRGAEVGWGKLEPQG-TRRTGSLG 224 P GPQG AG E ++GA G P G G G Sbjct: 901 PPGPQGLAGQRGIVGLPGQRGERGFPGLPGPSGEPGKQGAPGASGDRGPPGPVGPPGLTG 960 Query: 225 VDSSPLSETLGPAQCGSGRRRACSVLHHHCDGIRFRDCHCAPSACPGPTQDPQAGLCTGQ 284 P E A GR A V G R PGP P TG+ Sbjct: 961 PAGEPGREGSPGADGPPGRDGAAGV-----KGDRGETGAVGAPGAPGPPGSPGPAGPTGK 1015 Query: 285 EGYPG 289 +G G Sbjct: 1016 QGDRG 1020 Score = 39.7 bits (91), Expect = 0.004 Identities = 75/285 (26%), Positives = 96/285 (33%), Gaps = 55/285 (19%) Query: 41 SETGWFRGLCRSTGKRRPGHTAPRTQQPKPSGPSSHPREPPLPGAVTGGSLHFQEPP-PL 99 ++ G +G G R P A P P G +P EP PG G + + PP P Sbjct: 125 AQLGVMQGPMGPMGPRGPPGPAGA---PGPQGFQGNPGEPGEPGV--SGPMGPRGPPGPP 179 Query: 100 G-------AATAGSRHRQKPPSPGSRHRWEPPPPGAATATGSRHRREPPSPGAT-TAGSC 151 G A G + PP P R P PG G HR P GA AG+ Sbjct: 180 GKPGDDGEAGKPGKAGERGPPGPQGA-RGFPGTPGLPGVKG--HRGYPGLDGAKGEAGAP 236 Query: 152 HLRS-SGSTGTRRAPSHPAALQVPYTR-----------------EGPREPTPPAGPQGFA 193 ++ SGS G +P +P R GP P P GP G Sbjct: 237 GVKGESGSPGENGSPGPMGPRGLPGERGRTGPAGAAGARGNDGQPGPAGPPGPVGPAGGP 296 Query: 194 GSFCAEGSR--------RGAEVGWG-KLEPQGTRRTGSLGVDSSPLSETLGPAQCGSGRR 244 G A G++ RG E G + EP G G +P ++ + A+ +G Sbjct: 297 GFPGAPGAKGEAGPTGARGPEGAQGPRGEPGTPGSPGPAGASGNPGTDGIPGAKGSAG-- 354 Query: 245 RACSVLHHHCDGIRFRDCHCAPSACPGPTQDPQAGLCTGQEGYPG 289 GI P PGP GQ G PG Sbjct: 355 ---------APGIAGAPGFPGPRGPPGPQGATGPLGPKGQTGEPG 390 Score = 39.3 bits (90), Expect = 0.005 Identities = 45/160 (28%), Positives = 55/160 (34%), Gaps = 32/160 (20%) Query: 63 PRTQQPK----PSGPSSHPREPPLPGAVTGGSLHFQEPPPLGAATAGSRHRQKPPSPGSR 118 P T PK P+GP P L G P G + + P Sbjct: 656 PGTDGPKGASGPAGPPGAQGPPGLQGMPGERGAAGIAGPKGDRGDVGEKGPEGAPGKDGG 715 Query: 119 HRWEPP--PPGAATATGSRHRREPPSPGATTAGSCHLRSSGSTGTRRAPSHPAALQVPYT 176 P PPG A A G + PP P +GS G R AP Sbjct: 716 RGLTGPIGPPGPAGANGEKGEVGPPGP------------AGSAGARGAP----------- 752 Query: 177 REGPREPTPPAGPQGFAGSFCAEGSRRGAEVGWGKLEPQG 216 G R T P GP GFAG A+G + GA+ G+ +G Sbjct: 753 --GERGETGPPGPAGFAGPPGADG-QPGAKGEQGEAGQKG 789 Score = 38.9 bits (89), Expect = 0.006 Identities = 55/198 (27%), Positives = 70/198 (35%), Gaps = 29/198 (14%) Query: 57 RPGHTAPRTQQ--------PKPSGPSSHPR---EPPLPGAVTGGSLHFQEP------PPL 99 RPG P+ + P P G + P E LPGA L ++ PP Sbjct: 517 RPGPPGPQGARGQPGVMGFPGPKGANGEPGKAGEKGLPGAPGLRGLPGKDGETGAAGPPG 576 Query: 100 GAATAGSRHRQKPPSPGSRHRWEPPPPGAATATGSRHRREPPSPGATTAGSCHLRSSGST 159 A AG R Q P P S + P PPG G + P G Sbjct: 577 PAGPAGERGEQGAPGP-SGFQGLPGPPGPPGEGGKPGDQGVPGEAGAPGLVGPRGERGFP 635 Query: 160 GTRRAP-----SHPAALQVPYTREGPREPTPPAGPQGFAGSFCAEG--SRRGAEVGWGKL 212 G R +P P L +GP+ + PAGP G G +G RGA G Sbjct: 636 GERGSPGAQGLQGPRGLPGTPGTDGPKGASGPAGPPGAQGPPGLQGMPGERGAA---GIA 692 Query: 213 EPQGTR-RTGSLGVDSSP 229 P+G R G G + +P Sbjct: 693 GPKGDRGDVGEKGPEGAP 710 Score = 36.6 bits (83), Expect = 0.032 Identities = 60/233 (25%), Positives = 72/233 (30%), Gaps = 35/233 (15%) Query: 68 PKPSGPSSHPREPPLPG----AVTGGSLHFQEPPPLGAATA--GSRHRQKPPSPGSR--- 118 P P GP P P L G + GG LG G + PP P Sbjct: 92 PGPPGPPGPPGPPGLGGNFAAQMAGGFDEKAGGAQLGVMQGPMGPMGPRGPPGPAGAPGP 151 Query: 119 --HRWEPPPPGAATATGSRHRREPPSPGATTAGSCHLRSSGSTGTRRAPSHPAALQVPYT 176 + P PG +G R PP P G G R P A P T Sbjct: 152 QGFQGNPGEPGEPGVSGPMGPRGPPGPPGKPGDDGEAGKPGKAGERGPPGPQGARGFPGT 211 Query: 177 REGPREPTPPAGPQGFAGSFCAEGSRRGAEVGWGKLEPQGTRRTGSLGVDSSPLSETLGP 236 P G +G+ G A+G E G P +GS G + SP +GP Sbjct: 212 PGLP----GVKGHRGYPGLDGAKG-----EAG----APGVKGESGSPGENGSP--GPMGP 256 Query: 237 AQCGSGRRRACSVLHHHCDGIRFRDCHCAPSACPGPTQDPQAGLCTGQEGYPG 289 R R G R D P+ PGP G G+PG Sbjct: 257 RGLPGERGRTGPA---GAAGARGNDGQPGPAGPPGPVGP------AGGPGFPG 300 Score = 31.6 bits (70), Expect = 1.0 Identities = 26/89 (29%), Positives = 32/89 (35%), Gaps = 10/89 (11%) Query: 140 PPSPGATTAGSCHLRSSGSTGTRRAPSHPAALQVPYTREGPREPTPPA--GPQGFAGSFC 197 PP P G G + AP P T P P PP GP G G+F Sbjct: 52 PPGPQGPAGEQGPRGDRGDKGEKGAPGPRGRDGEPGTPGNPGPPGPPGPPGPPGLGGNFA 111 Query: 198 A------EGSRRGAEVG--WGKLEPQGTR 218 A + GA++G G + P G R Sbjct: 112 AQMAGGFDEKAGGAQLGVMQGPMGPMGPR 140 Score = 28.9 bits (63), Expect = 6.7 Identities = 46/179 (25%), Positives = 57/179 (31%), Gaps = 50/179 (27%) Query: 58 PGHTAPRTQQPKPSGPSSHPREPPLPGAVTGGSLHFQEPPPLG-AATAGSRHRQKPPSPG 116 PG P P P+GP+ + GA P+G + AG+R Q P P Sbjct: 998 PGAPGP-PGSPGPAGPTGKQGDRGEAGA----------QGPMGPSGPAGARGIQGPQGPR 1046 Query: 117 SRHRWEPPPPGAATATGSRHRREPPSPGATTAGSCHLRSSGSTGTRRAPSHPA-----AL 171 + E PG G R G TG + P P Sbjct: 1047 G-DKGEAGEPGERGLKGHR---------------------GFTGLQGLPGPPGPSGDQGA 1084 Query: 172 QVPYTREGPREPTPPAGPQGFAGSFCAEGSRRGAEVGWGKLEPQGTR-RTGSLGVDSSP 229 P GPR P P GP G + GA G + P G R R+G G P Sbjct: 1085 SGPAGPSGPRGPPGPVGPSG----------KDGANGIPGPIGPPGPRGRSGETGPAGPP 1133 >gi|119829187 alpha 1 type XVII collagen [Homo sapiens] Length = 1497 Score = 47.8 bits (112), Expect = 1e-05 Identities = 49/166 (29%), Positives = 59/166 (35%), Gaps = 36/166 (21%) Query: 58 PGHTAPRTQQ----PKPSGPSSHPRE-----PPLPGAVTGGSLHFQEPPPLGAATAGSRH 108 PG PR P P GP P E P PG+ S F PP G + Sbjct: 859 PGPPGPRGPPGPSIPGPPGPRGPPGEGLPGPPGPPGSFLSNSETFLSGPPGPPGPPGPKG 918 Query: 109 RQKPPSPGSRHRWEPPPPGAATATGSR---HRREPPSPGATTAGSCHLRSSGSTGTRRAP 165 Q PP P H+ E PG +T+ S + + PP P G G + P Sbjct: 919 DQGPPGPRG-HQGEQGLPGFSTSGSSSFGLNLQGPPGPPG---------PQGPKGDKGDP 968 Query: 166 SHPAALQVPYTREGPRE-----------PTPPAGPQGFAGSFCAEG 200 P AL +P GP E P P GP G GS + G Sbjct: 969 GVPGALGIP---SGPSEGGSSSTMYVSGPPGPPGPPGPPGSISSSG 1011 Score = 35.4 bits (80), Expect = 0.072 Identities = 62/239 (25%), Positives = 80/239 (33%), Gaps = 40/239 (16%) Query: 68 PKPSGPSSHPREPPLPGAVTGGSLHFQEPP--------PLGAATAGSRHRQKPPSPGSRH 119 P P G P P +PG + G Q P P G R R+ P P Sbjct: 578 PGPKGDRGFPGTPGIPGPL--GHPGPQGPKGQKGSVGDPGMEGPMGQRGREGPMGP---- 631 Query: 120 RWEPPPPGAATATGSRHRREPPSPGATTAGSCHLRSSGSTGTRRAPSHPAALQVPYTREG 179 R E PPG+ G R P P + GS+G+ G Sbjct: 632 RGEAGPPGSGEK-GERGAAGEPGPHGPPGVPGSVGPKGSSGS----------------PG 674 Query: 180 PREPTPPAGPQGFAGSFCAEGSRRGAEVGWGKLEPQGTR-RTGSLGVDSSPLSETLGPAQ 238 P+ P P G QG G G +G + G P+G + G G+ P L A Sbjct: 675 PQGPPGPVGLQGLRGEVGLPGV-KGDKGPMGPPGPKGDQGEKGPRGLTGEPGMRGLPGAV 733 Query: 239 CGSGRRRACSVL----HHHCDGIRFRDCHCAPSACPGPTQDP-QAGLC--TGQEGYPGT 290 G + A H G + PGP+ DP + GL G +G PGT Sbjct: 734 GEPGAKGAMGPAGPDGHQGPRGEQGLTGMPGIRGPPGPSGDPGKPGLTGPQGPQGLPGT 792 >gi|41349486 proline-rich protein BstNI subfamily 1 isoform 3 preproprotein [Homo sapiens] Length = 178 Score = 47.8 bits (112), Expect = 1e-05 Identities = 43/137 (31%), Positives = 52/137 (37%), Gaps = 24/137 (17%) Query: 58 PGHTAPRTQQPKPSGPSSHPREPPLPGAVTG----GSLHFQEPPPLGAATAGSRHRQKPP 113 P A Q P P G + PP PG G G Q PPP G Q PP Sbjct: 29 PSLIAGNPQGPSPQGGNKPQGPPPPPGKPQGPPPQGGNKPQGPPPPGKP-------QGPP 81 Query: 114 SPGSRHRWEPPPPGAATATGSRHRREPPSPGATTAGSCHLRSSGSTGTRRAPSHPAALQV 173 G + R PPG + PP G G + G + ++ A S P Q Sbjct: 82 PQGDKSRSPRSPPGKP--------QGPPPQGGKPQGP---PAQGGSKSQSARSPPGKPQG 130 Query: 174 PYTREG--PREPTPPAG 188 P +EG P+ P PPAG Sbjct: 131 PPQQEGNNPQGPPPPAG 147 Score = 36.6 bits (83), Expect = 0.032 Identities = 35/143 (24%), Positives = 49/143 (34%), Gaps = 19/143 (13%) Query: 54 GKRRPGHTAP--RTQQPKPSGPSSHPREPPLPGAVTGG------SLHFQEPP--PLGAAT 103 G + G P + Q P P G + P+ PP PG G S + PP P G Sbjct: 44 GNKPQGPPPPPGKPQGPPPQG-GNKPQGPPPPGKPQGPPPQGDKSRSPRSPPGKPQGPPP 102 Query: 104 AGSRHRQKPPSPGSRHRWEPPPPGAATATGSRHRREPPSPGATTAGSCHLRSSGSTGTRR 163 G + + P GS+ + PPG + P P G+ + G + Sbjct: 103 QGGKPQGPPAQGGSKSQSARSPPGKPQGPPQQEGNNPQGPPPPAGGNPQQPQAPPAGQPQ 162 Query: 164 APSHPAALQVPYTREGPREPTPP 186 P P +G R PP Sbjct: 163 GPPRPP--------QGGRPSRPP 177 >gi|51702526 Wiskott-Aldrich syndrome gene-like protein [Homo sapiens] Length = 505 Score = 47.4 bits (111), Expect = 2e-05 Identities = 47/149 (31%), Positives = 55/149 (36%), Gaps = 25/149 (16%) Query: 42 ETGWFRGLCRSTGKRRPGHTAPRTQQPKPSGPSSHPREPPLPGAVTGGSLHFQEPPPLGA 101 +TG + ++ P P P P P H PP P A G+ PPP A Sbjct: 261 KTGGVEAVKNELRRQAPPPPPPSRGGPPPPPPPPHNSGPPPPPARGRGA---PPPPPSRA 317 Query: 102 ATAGSRHRQKPPSPGSRHRWEPPPPGAATATGSRHRREPPSPGATTAGSCHLRSSGSTGT 161 TA PP P SR PPP +R PP P A L SS +G Sbjct: 318 PTAA-----PPPPPPSRPSVAVPPP-------PPNRMYPPPPPA-------LPSSAPSGP 358 Query: 162 RRAPSHPAALQV-PYTREGPREPTPPAGP 189 P P+ L V P P P PP GP Sbjct: 359 --PPPPPSVLGVGPVAPPPPPPPPPPPGP 385 Score = 31.6 bits (70), Expect = 1.0 Identities = 25/89 (28%), Positives = 30/89 (33%), Gaps = 20/89 (22%) Query: 63 PRTQQPKPSGPSSHPRE--PPLPGAVTGGSLHFQEPPPLGAATAGSRHRQKPPSPGSRHR 120 P +P + P P PP P A+ + PPP G PP P Sbjct: 325 PPPSRPSVAVPPPPPNRMYPPPPPALPSSAPSGPPPPPPSVLGVGPVAPPPPPPP----- 379 Query: 121 WEPPPPGAATATGSRHRREPPSPGATTAG 149 PPPPG PP PG + G Sbjct: 380 --PPPPG-----------PPPPPGLPSDG 395 >gi|41349484 proline-rich protein BstNI subfamily 1 isoform 2 preproprotein [Homo sapiens] Length = 198 Score = 47.4 bits (111), Expect = 2e-05 Identities = 44/144 (30%), Positives = 55/144 (38%), Gaps = 18/144 (12%) Query: 58 PGHTAPRTQQPKPSGPSSHPREPPLPGAVTG----GSLHFQEPP----PLGAATAGSRHR 109 P A Q P P G + PP PG G G Q PP P G G + R Sbjct: 29 PSLIAGNPQGPSPQGGNKPQGPPPPPGKPQGPPPQGGNKPQGPPPPGKPQGPPPQGDKSR 88 Query: 110 QKPPSPGSRHRWEPP---PPGAATATGSRHRREPPSPGATTAGSCHLRSSGSTGTRRAPS 166 P SP + + PP P G + PP PG + G + ++ A S Sbjct: 89 -SPRSPPGKPQGPPPQGGKPQGPPPQGGNKPQGPPPPGKPQGPP----AQGGSKSQSARS 143 Query: 167 HPAALQVPYTREG--PREPTPPAG 188 P Q P +EG P+ P PPAG Sbjct: 144 PPGKPQGPPQQEGNNPQGPPPPAG 167 Score = 34.7 bits (78), Expect = 0.12 Identities = 32/126 (25%), Positives = 43/126 (34%), Gaps = 18/126 (14%) Query: 62 APRTQQPKPSGPSSHPREPPLPGAVTGGSLHFQEPPPLGAATAGSRHRQKPPSPG-SRHR 120 +PR+ KP GP +P P G Q PPP G Q PP+ G S+ + Sbjct: 89 SPRSPPGKPQGPPPQGGKPQGPPPQGGNKP--QGPPPPGKP-------QGPPAQGGSKSQ 139 Query: 121 WEPPPPGAATATGSRHRREPPSPGATTAGSCHLRSSGSTGTRRAPSHPAALQVPYTREGP 180 PPG + P P G+ + G + P P +G Sbjct: 140 SARSPPGKPQGPPQQEGNNPQGPPPPAGGNPQQPQAPPAGQPQGPPRPP--------QGG 191 Query: 181 REPTPP 186 R PP Sbjct: 192 RPSRPP 197 Score = 30.8 bits (68), Expect = 1.8 Identities = 28/96 (29%), Positives = 35/96 (36%), Gaps = 4/96 (4%) Query: 98 PLGAATAGSRHRQKPPSPGSRHRWEPPPPGAATATGSRHRREPPSPGATTAGSCHLRSSG 157 P G + G Q PP P + + PPP G G +P P S RS Sbjct: 36 PQGPSPQGGNKPQGPPPPPGKPQ-GPPPQGGNKPQGPPPPGKPQGPPPQGDKSRSPRSPP 94 Query: 158 STGTRRAPSHPAALQVPYTREG--PREPTPPAGPQG 191 + P Q P + G P+ P PP PQG Sbjct: 95 GK-PQGPPPQGGKPQGPPPQGGNKPQGPPPPGKPQG 129 >gi|32140760 collagen, type XXVII, alpha 1 [Homo sapiens] Length = 1860 Score = 46.6 bits (109), Expect = 3e-05 Identities = 46/159 (28%), Positives = 63/159 (39%), Gaps = 31/159 (19%) Query: 55 KRRPGHTAPRTQQPKPSGPSSHPREPPLPG-AVTGGSLHFQEPPPLGAATAGSRHRQKP- 112 +R PG P +P P++ + P+P A T + P A T S H+ P Sbjct: 427 QRNPGMPRPPPPSTRPLPPTTSSSKKPIPTLARTEAKITSHASKPASART--STHKPPPF 484 Query: 113 --------PSPGSRHRWEPP----PPGAATATGSRHRREPPSPGATTAGS---CHLRSSG 157 P+PGS PP PP + T+T R P+PG+ GS +S Sbjct: 485 TALSSSPAPTPGSTRSTRPPATMVPPTSGTST-PRTAPAVPTPGSAPTGSKKPIGSEASK 543 Query: 158 STGTRRAPSHP-------AALQVPY----TREGPREPTP 185 G + +P P AA VP TR PR+P P Sbjct: 544 KAGPKSSPRKPVPLRPGKAARDVPLSDLTTRPSPRQPQP 582 Score = 39.3 bits (90), Expect = 0.005 Identities = 44/137 (32%), Positives = 50/137 (36%), Gaps = 22/137 (16%) Query: 68 PKPSGPSSHPREPPLPGAVTGGSLHFQEPPPLGAATAGSRHRQKPPSPGSRHRWEPP-PP 126 P P G HP P GG EP P G + R P G++ R P P Sbjct: 1023 PGPKGSMGHPGMP-------GGMGTPGEPGPQGPPGS----RGPPGMRGAKGRRGPRGPD 1071 Query: 127 GAATATGSRHRREPPSPGAT--------TAGSC-HLRSSGSTGTRRAPSHPAALQVPYTR 177 G A GSR + PP P AG HL S G G PS P + Sbjct: 1072 GPAGEQGSRGLKGPPGPQGRPGRPGQQGVAGERGHLGSRGFPGIP-GPSGPPGTKGLPGE 1130 Query: 178 EGPREPTPPAGPQGFAG 194 GP+ P P GP G G Sbjct: 1131 PGPQGPQGPIGPPGEMG 1147 Score = 38.9 bits (89), Expect = 0.006 Identities = 43/180 (23%), Positives = 65/180 (36%), Gaps = 39/180 (21%) Query: 63 PRTQQPKPSGPSS--------HPREPPLPGAVTGGSLHFQEPPPLGAATAGSRHRQKPPS 114 P++ KPS PS+ HP + P + T +L Q+ P + +R + Sbjct: 365 PKSLPTKPSAPSTSIVPIKSPHPTQKTAPSSFTKSALPTQKQVPPTSRPVPARVSRPAEK 424 Query: 115 PGSRHRWEPPPPGAATA----TGSRHRREPPSPGATTA---GSCHLRSSGSTGTRRAP-- 165 P R+ P PP +T T S ++ P+ T A +S T T + P Sbjct: 425 PIQRNPGMPRPPPPSTRPLPPTTSSSKKPIPTLARTEAKITSHASKPASARTSTHKPPPF 484 Query: 166 ----------------SHPAALQVPYT------REGPREPTPPAGPQGFAGSFCAEGSRR 203 + P A VP T R P PTP + P G +E S++ Sbjct: 485 TALSSSPAPTPGSTRSTRPPATMVPPTSGTSTPRTAPAVPTPGSAPTGSKKPIGSEASKK 544 Score = 38.5 bits (88), Expect = 0.008 Identities = 64/252 (25%), Positives = 84/252 (33%), Gaps = 52/252 (20%) Query: 53 TGKRRPGHTAPRTQQPKPSGPSSHPREP-PL-PGAVTGGSLHFQEPPPLGAATAGSRHRQ 110 TG ++P ++ K +GP S PR+P PL PG PL T RQ Sbjct: 531 TGSKKP----IGSEASKKAGPKSSPRKPVPLRPGKAA-------RDVPLSDLTTRPSPRQ 579 Query: 111 KPPSPGSRHRWEPPPPGAATATGSRHRREPPSPGATTAGSCHLRSS-------------G 157 PS + P A ++ P P ++ HL S G Sbjct: 580 PQPS-------QQTTPALVLAP-AQFLSSSPRPTSSGYSIFHLAGSTPFPLLMGPPGPKG 631 Query: 158 STGTRRAPSHPAALQVPYTREGPREPTPPAGPQGFAGSFCAEGSRRGAEVGWGKLEPQGT 217 G P P +P R GPR P P G G G A+G + + GK Sbjct: 632 DCGLPGPPGLPGLPGIPGAR-GPRGPPGPYGNPGLPGPPGAKGQKGDPGLSPGKAHDGAK 690 Query: 218 RRTGSLGVDSSPLSETLGPAQCGSGRRRACSVLHHHCDGIRFRDCHCAPSACPGPTQDPQ 277 G G+ +P GP GR+ G H PGP P Sbjct: 691 GDMGLPGLSGNP-----GP----PGRKGH--------KGYPGPAGHPGEQGQPGPEGSPG 733 Query: 278 AGLCTGQEGYPG 289 A G++G PG Sbjct: 734 AKGYPGRQGLPG 745 Score = 32.0 bits (71), Expect = 0.79 Identities = 23/77 (29%), Positives = 25/77 (32%), Gaps = 8/77 (10%) Query: 126 PGAATATGSRHRREPPSPGATTAGSCHLRSSGSTGTRRAPSH--------PAALQVPYTR 177 PG G R PP H G GT P P ++ R Sbjct: 1005 PGIVGEKGDRGMMGPPGVPGPKGSMGHPGMPGGMGTPGEPGPQGPPGSRGPPGMRGAKGR 1064 Query: 178 EGPREPTPPAGPQGFAG 194 GPR P PAG QG G Sbjct: 1065 RGPRGPDGPAGEQGSRG 1081 Score = 30.4 bits (67), Expect = 2.3 Identities = 47/182 (25%), Positives = 58/182 (31%), Gaps = 23/182 (12%) Query: 58 PGHTAPRTQQPKPSGPSSHPREPPLPGAVTGGSLHFQEPP-----PLGAATAGSRHRQ-K 111 PG + Q P P + + PL GS+ F PP P G + Sbjct: 867 PGFQGDKGSQGLPGFPGARGKPGPLGKVGDKGSIGFPGPPGPEGFPGDIGPPGDNGPEGM 926 Query: 112 PPSPGSRHRWEPPPPGAATATGSRHRREPP-SPGATTAGSCHLRSSGSTGTRRAPSHPAA 170 PG+R P P G G PP +PG G G + P P Sbjct: 927 KGKPGARGL--PGPRGQLGPEGDEGPMGPPGAPGL----------EGQPGRKGFPGRPGL 974 Query: 171 LQVPYTREGPREPTPPAGPQGFAG--SFCAEGSRRGAEVGWGKLEPQGT-RRTGSLGVDS 227 V P P P G QGF G E G + G + P G GS+G Sbjct: 975 DGVKGEPGDPGRP-GPVGEQGFMGFIGLVGEPGIVGEKGDRGMMGPPGVPGPKGSMGHPG 1033 Query: 228 SP 229 P Sbjct: 1034 MP 1035 >gi|4826998 splicing factor proline/glutamine rich (polypyrimidine tract binding protein associated) [Homo sapiens] Length = 707 Score = 46.6 bits (109), Expect = 3e-05 Identities = 43/151 (28%), Positives = 63/151 (41%), Gaps = 24/151 (15%) Query: 55 KRRPGHTAPRTQQPKPSGPSSHP-----REPPLPGAVTGGSLHFQEPPPL-GAATAGSRH 108 +++P P QQP P P HP ++PP P + + Q P P G +A Sbjct: 69 QQQPPPQQPPPQQPPPHQPPPHPQPHQQQQPPPPPQDSSKPVVAQGPGPAPGVGSAPPAS 128 Query: 109 RQKPPS--------PGSRHRWEPPPPGAATATGSRHRREPPSPGATTAGSCHLRSSGSTG 160 PP+ PGS P PP A T+ + PP+P ++ + ++ G Sbjct: 129 SSAPPATPPTSGAPPGSGPGPTPTPPPAVTS--APPGAPPPTPPSSGVPTTPPQAGG--- 183 Query: 161 TRRAPSHPAALQVPYTREGPREPTPPAGPQG 191 P PAA VP GP++ P GP+G Sbjct: 184 ---PPPPPAA--VPGPGPGPKQGPGPGGPKG 209 Score = 43.9 bits (102), Expect = 2e-04 Identities = 54/211 (25%), Positives = 65/211 (30%), Gaps = 27/211 (12%) Query: 58 PGHTAPRTQQPKPSGPSSHPREPPLPGAVTGGSLHFQEPPPLGAATAGSRHRQKPPSPGS 117 PG + + P GP +PP+P Q+PPP Q PP P Sbjct: 36 PGMGLNQNRGPMGPGPGQSGPKPPIPPPPPHQQQ--QQPPPQQPPPQQPPPHQPPPHPQP 93 Query: 118 RHRWEPPP-------------PGAATATGSRHRREPPSPGATTAGSCHLRSSGSTGTRRA 164 + +PPP PG A GS +P AT S SG T Sbjct: 94 HQQQQPPPPPQDSSKPVVAQGPGPAPGVGSAPPASSSAPPATPPTSGAPPGSGPGPTPTP 153 Query: 165 PSHPAALQVPYTREGPREP------TPPAGPQGFAGSFCAEGSRRGAEVGWGKLEPQGTR 218 P PA P P P TPP G G + G G P+G + Sbjct: 154 P--PAVTSAPPGAPPPTPPSSGVPTTPPQAGGPPPPPAAVPGPGPGPKQGPGPGGPKGGK 211 Query: 219 RTGSLGVDSSPLSETLG----PAQCGSGRRR 245 G P T G P G G R Sbjct: 212 MPGGPKPGGGPGLSTPGGHPKPPHRGGGEPR 242 Score = 28.9 bits (63), Expect = 6.7 Identities = 41/189 (21%), Positives = 58/189 (30%), Gaps = 27/189 (14%) Query: 61 TAPRTQQPKPS-----GPSSHPREPPLPGAVTGGSLHFQEPPPLGAATAGSRHRQKPPSP 115 T P+ P P GP P++ P PG GG + P G + KPP Sbjct: 177 TPPQAGGPPPPPAAVPGPGPGPKQGPGPGGPKGGKMPGGPKPGGGPGLSTPGGHPKPPHR 236 Query: 116 GS--------------RHRWEPPPPGAATATGSRHRREPPSPGATTAGSCHLRSSGSTGT 161 G + + PPPG G + S G S R T T Sbjct: 237 GGGEPRGGRQHHPPYHQQHHQGPPPGG--PGGRSEEKISDSEGFKANLSLLRRPGEKTYT 294 Query: 162 RRAPSHPAALQVPYTREGPREPTPPAGPQGFAGSFCAEGSRRGAEVGWGKLEPQGTRRTG 221 +R L T + + G G +G G+ KLE + Sbjct: 295 QRCRLFVGNLPADITEDEFKRLFAKYGEPG------EVFINKGKGFGFIKLESRALAEIA 348 Query: 222 SLGVDSSPL 230 +D +P+ Sbjct: 349 KAELDDTPM 357 >gi|163965366 nascent polypeptide-associated complex alpha subunit isoform a [Homo sapiens] Length = 2078 Score = 46.6 bits (109), Expect = 3e-05 Identities = 49/169 (28%), Positives = 59/169 (34%), Gaps = 22/169 (13%) Query: 62 APRTQQPKPSGPSSHPREPPLPGAVTGGSLHFQEPPPLGAATAGSRHR-------QKPPS 114 AP T P P P PP GA T + PP L A H+ PPS Sbjct: 1240 APTTPAATPPSPKGGPATPPPKGAPTPPA---ATPPSLKGGLATPPHKGAPNPAVVTPPS 1296 Query: 115 PGSRHRWEPP-----PPGAATATGSRHRREPPSPGATTAGSCHLRSSGSTGTRRA--PSH 167 P PP PP A + PP GA T + S T T A PS Sbjct: 1297 PKGGPATSPPKGAPTPPAATPPSPKGSPGTPPPKGAPTPPAVTPPSPKGTPTLPATTPSS 1356 Query: 168 PAALQVPYTREGPREPTPPAGPQGFAG--SFCAEGSRRGAEVGWGKLEP 214 P ++EG PTPPA G + +RG + K +P Sbjct: 1357 KGGPTTPSSKEG---PTPPAATPSHKGGPAMTPPSPKRGPAIPSPKGDP 1402 Score = 42.4 bits (98), Expect = 6e-04 Identities = 48/151 (31%), Positives = 58/151 (38%), Gaps = 33/151 (21%) Query: 61 TAPRTQQPKPSG--PSSHPREPPLPGAVT-----GGSLHFQEPPPLGAATAGSRHRQKPP 113 T P P P G + P+ P P A T GG P P GA T + PP Sbjct: 964 TPPAATPPSPKGGPATPSPKGAPTPPAATPPSPKGGPA---TPSPKGAPTPPA---VTPP 1017 Query: 114 SPGSRHRWEPPPPGAATATGSRHRREPPSP-----------GATTAGSCHLRS-SGSTGT 161 SP P P GA+T + PPSP GA T + L S G T Sbjct: 1018 SPKGSPAATPFPKGASTPPAA----TPPSPKGSPAATPLPKGAPTTPAATLPSPKGGPAT 1073 Query: 162 ---RRAPSHPAALQVPYTREGPREPTPPAGP 189 + AP+ PAA P + GP P+P P Sbjct: 1074 PSLKGAPTPPAATP-PSPKGGPATPSPKGAP 1103 Score = 40.8 bits (94), Expect = 0.002 Identities = 40/138 (28%), Positives = 49/138 (35%), Gaps = 28/138 (20%) Query: 55 KRRPGHTAPRTQQPKPSGPSSHP---REPPLPGAVTGGSLHFQEPPPLGAATAGSRHRQK 111 K P AP+ Q P S SS P R P P + P P A + Sbjct: 897 KEGPATPAPK-QAPALSMTSSSPKKARATPAPKGIPASPSPKGAPTPPAATPPSPKGGPA 955 Query: 112 PPSPGSRHRWEPPPPGAATATGSRHRREPPSPGATTAGSCHLRSSGSTGTRRAPSHPAAL 171 PSP +W P PP A PPSP A + + AP+ PAA Sbjct: 956 TPSP----KWAPTPPAAT----------PPSPKGGPA---------TPSPKGAPTPPAAT 992 Query: 172 QVPYTREGPREPTPPAGP 189 P + GP P+P P Sbjct: 993 P-PSPKGGPATPSPKGAP 1009 Score = 37.7 bits (86), Expect = 0.014 Identities = 49/160 (30%), Positives = 55/160 (34%), Gaps = 42/160 (26%) Query: 58 PGHTAPRTQQPKPSGPSSHPREPPLPGAVT----------GGSLHFQEPPPLGAATAGSR 107 P AP T P P PP GA T GG PPP GA T + Sbjct: 1121 PHKGAPTTPAATPPSPKGGLATPPPKGAPTTPAATPPSPKGG---LATPPPKGAPTTPAA 1177 Query: 108 HRQKPPSPGSRHRWEPPPPGAATATGSRHRREPPSP-----------GATTAGSCHLRSS 156 PPSP P P GA T + PPSP TT + Sbjct: 1178 ---TPPSPKGGLA-TPSPKGAPTTPAAT----PPSPKGGLATPSPKGAPTTPAATPPSPK 1229 Query: 157 GSTGT---RRAPSHPAALQVPYTREGPR------EPTPPA 187 G T + AP+ PAA P + GP PTPPA Sbjct: 1230 GGLATPSPKGAPTTPAATP-PSPKGGPATPPPKGAPTPPA 1268 Score = 37.4 bits (85), Expect = 0.019 Identities = 42/145 (28%), Positives = 56/145 (38%), Gaps = 36/145 (24%) Query: 62 APRTQQPK--PSGPSSH------------PREPPLPGAVTGGSLHFQ---EPPPLGAATA 104 AP T PK P+ PSS P+EPP P V S + P P+GA T Sbjct: 1446 APATSAPKGGPATPSSKGDPTLPAVTPPSPKEPPAPKQVATSSSPKKAPATPAPMGAPTL 1505 Query: 105 GSRHRQKPPSPGSRHRWEPPPPGAATATGSRHRREPPSPGATTAGSCHLRSSGSTGTRRA 164 + P P AT S RR+P +P AT + + +T + Sbjct: 1506 PA--------------VIPSSPKEVPATPS-SRRDPIAPTATLLS----KKTPATLAPKE 1546 Query: 165 PSHPAALQVPYTREGPREPTPPAGP 189 P A+ VP ++ P PTP P Sbjct: 1547 ALIPPAMTVPSPKKTPAIPTPKEAP 1571 Score = 37.0 bits (84), Expect = 0.025 Identities = 37/142 (26%), Positives = 49/142 (34%), Gaps = 30/142 (21%) Query: 48 GLCRSTGKRRPGHTAPRTQQPKPSGPSSHPREPPLPGAVTGGSLHFQEPPPLGAATAGSR 107 G+ S +RP P G S P P + SL FQ GS+ Sbjct: 798 GVSVSPQTKRPPTKKGSAGPDTPIGNLSSPVSPVEASFLPENSLSFQ----------GSK 847 Query: 108 HRQKPPSPGSRHRWEPPPPGAATATGSRHRREPPSPGATTAGSCHLRSSGSTGTRRAPSH 167 SP + H PP P A P+P A T L G T + Sbjct: 848 D-----SPATTHSPTPPSPKGA-----------PTPSAVTP----LSPKGVTLPPKETPT 887 Query: 168 PAALQVPYTREGPREPTPPAGP 189 P+ + +P+ +EGP P P P Sbjct: 888 PSVVNLPFPKEGPATPAPKQAP 909 Score = 33.1 bits (74), Expect = 0.36 Identities = 37/146 (25%), Positives = 55/146 (37%), Gaps = 20/146 (13%) Query: 55 KRRPGHTAPRTQQPKPSG-PSSHPREPPLP----GAVTGGSLHFQEPP----PLGAATAG 105 KR P +P+ P+ P S + P P GA T P L A A Sbjct: 1390 KRGPAIPSPKGDPTSPAVIPLSPKKAPATPVTREGAATPSKGDLTPPAVTPVSLKKAPAT 1449 Query: 106 SRHRQKPPSPGSRHRWEPPPPGAATATGSRHRREPPSPGATTAGSCHLRSSGSTGTRRAP 165 S + P +P S+ +P P + +EPP+P S ++ + AP Sbjct: 1450 SAPKGGPATPSSKG--DPTLPAVTPPSP----KEPPAPKQVATSSSPKKAPATPAPMGAP 1503 Query: 166 SHPAAL-----QVPYTREGPREPTPP 186 + PA + +VP T R+P P Sbjct: 1504 TLPAVIPSSPKEVPATPSSRRDPIAP 1529 Score = 33.1 bits (74), Expect = 0.36 Identities = 41/161 (25%), Positives = 57/161 (35%), Gaps = 34/161 (21%) Query: 52 STGKRRPGHTAPRTQQPKPSGPSSHPREPPL-------PGAVTGGSLHFQEPPPLG---- 100 S+ K+ P AP P+ S P+E P P A T L + P L Sbjct: 1488 SSPKKAPATPAPMGAPTLPAVIPSSPKEVPATPSSRRDPIAPTATLLSKKTPATLAPKEA 1547 Query: 101 ----AATAGSRHR--------QKPPSPGSRHRWEPPPPGAATATGSRHRREPPSPGATTA 148 A T S + + P +P S+ PP +T G+ +E P A T Sbjct: 1548 LIPPAMTVPSPKKTPAIPTPKEAPATPSSKEASSPPAVTPSTYKGAPSPKELLIPPAVT- 1606 Query: 149 GSCHLRSSGSTGTRRAPSHPAALQVPYTREGPREPTPPAGP 189 S + AP+ P A+ P +GP P P P Sbjct: 1607 ---------SPSPKEAPT-PPAVTPPSPEKGPATPAPKGTP 1637 >gi|11386161 alpha 2 type IX collagen [Homo sapiens] Length = 689 Score = 46.2 bits (108), Expect = 4e-05 Identities = 51/175 (29%), Positives = 64/175 (36%), Gaps = 24/175 (13%) Query: 70 PSGPSSHPREPPLPGAVTG--GSLHF----------QEPPPLGAATAGSRHRQKPPSPGS 117 PSGP P +P PG + G GS F + PP L + R PG Sbjct: 147 PSGPPGPPGKPGRPGTIQGLEGSADFLCPTNCPPGMKGPPGLQGVKGHAGKRGILGDPG- 205 Query: 118 RHRWEPPPPGAATATGSRHRREPPSPGATTAGSCHLRSSGSTGTRRAPSHPAALQV--PY 175 H+ +P P G A+G + PP P G TG A+ P Sbjct: 206 -HQGKPGPKGDVGASGEQGIPGPPGPQGIRGYPGMAGPKGETGPHGYKGMVGAIGATGPP 264 Query: 176 TREGPREPTPPAGPQGFAGSFCAEGSRRGAEVGWGKLEPQG-TRRTGSLGVDSSP 229 EGPR P AG +G GS G + G P+G T G G D +P Sbjct: 265 GEEGPRGPPGRAGEKGDEGSPGIRGPQ-------GITGPKGATGPPGINGKDGTP 312 Score = 30.0 bits (66), Expect = 3.0 Identities = 41/149 (27%), Positives = 50/149 (33%), Gaps = 20/149 (13%) Query: 58 PGHTAPRTQQPKPSGPSSHPREPPLPGAVTGGSLHFQEPPPLGAATAGSRHRQKPPSPGS 117 PG P P GP HP +PG + G P G R + PG Sbjct: 558 PGPPGP-PGYPGKQGPHGHPGPRGVPG-IVGAVGQIGNTGPKG-------KRGEKGDPGE 608 Query: 118 RHRWEPPPPGAATATGSRHRREPPSPGATTAGSCHLRSS-GSTGTRRAPSHPAALQVPYT 176 R P PG G P PG G R S G+ G P P + +P Sbjct: 609 VGRGHPGMPGPPGIPGL-----PGRPGQAINGKDGDRGSPGAPGEAGRPGLPGPVGLP-- 661 Query: 177 REGPREPTPPAGPQGFAGSFCAE-GSRRG 204 G EP G +A + E GS +G Sbjct: 662 --GFCEPAACLGASAYASARLTEPGSIKG 688 >gi|112382226 atrophin-1 like protein isoform b [Homo sapiens] Length = 1012 Score = 46.2 bits (108), Expect = 4e-05 Identities = 58/223 (26%), Positives = 77/223 (34%), Gaps = 46/223 (20%) Query: 58 PGHTAPRTQQPKPSGPSS-----HPREPPLPGAVTGGSLHFQEPP--PLGAATAGSRHRQ 110 P P T P+ S+ PRE PLP A H + PP P+ A H+ Sbjct: 335 PAAAYPHTSLQLPASQSALQSQQPPREQPLPPAPLAMP-HIKPPPTTPIPQLPAPQAHKH 393 Query: 111 KP----PSPGSRHRWEPPPPGAATATGSRHRREPPS---------PGATTAGSCHLRSSG 157 P PSP S + PPPP A S PPS P + S + G Sbjct: 394 PPHLSGPSPFSMNANLPPPP-ALKPLSSLSTHHPPSAHPPPLQLMPQSQPLPSSPAQPPG 452 Query: 158 STGTRRAPSHPAA---------------LQVPYTREGP---------REPTPPAGPQGFA 193 T ++ P PA+ Q P+ GP TPPAGP A Sbjct: 453 LTQSQNLPPPPASHPPTGLHQVAPQPPFAQHPFVPGGPPPITPPTCPSTSTPPAGPGTSA 512 Query: 194 GSFCAEGSRRGAEVGWGKLEPQGTRRTGSLGVDSSPLSETLGP 236 C+ + G + G P T + +D + E+ P Sbjct: 513 QPPCSGAAASGGSIAGGSSCPLPTVQIKEEALDDAEEPESPPP 555 Score = 42.7 bits (99), Expect = 4e-04 Identities = 42/133 (31%), Positives = 53/133 (39%), Gaps = 11/133 (8%) Query: 58 PGHTAPRTQQPKPSGPSSHPREPPLPGAVTGGSLHFQEPPPLGAATAGSRHRQKPPSPGS 117 P AP P PS S+ P P LP G + PP G+ TA Q P +P + Sbjct: 185 PALQAPTGVTPAPS--SAPPGTPQLP--TPGPTPSATAVPPQGSPTASQAPNQ-PQAPTA 239 Query: 118 RHRWEPPPPGAATATGSRHRREPPSPGATTAGSCHLRSSGSTGTRRAPSHPAALQVPYTR 177 P P + H + PPSP S H TG+ PS P+ Q P Sbjct: 240 -----PVPHTHIQQAPALHPQRPPSPHPPPHPSPHPPLQPLTGSAGQPSAPSHAQPPLHG 294 Query: 178 EGPREP-TPPAGP 189 +GP P + AGP Sbjct: 295 QGPPGPHSLQAGP 307 Score = 33.1 bits (74), Expect = 0.36 Identities = 44/175 (25%), Positives = 62/175 (35%), Gaps = 47/175 (26%) Query: 61 TAPRTQQPKPSGPSSHPREPPLPGAVTGGSL--------HFQEPP-------PLGAATAG 105 +A + P + P H + PP P ++ G L F PP PLG + A Sbjct: 278 SAGQPSAPSHAQPPLHGQGPPGPHSLQAGPLLQHPGPPQPFGLPPQASQGQAPLGTSPAA 337 Query: 106 S---------------------RHRQKPPSPGSRHRWEPPP--PGAATATGSRHRREP-- 140 + R + PP+P + +PPP P H+ P Sbjct: 338 AYPHTSLQLPASQSALQSQQPPREQPLPPAPLAMPHIKPPPTTPIPQLPAPQAHKHPPHL 397 Query: 141 --PSPGATTAG---SCHLRSSGSTGTRRAPS-HPAALQ-VPYTREGPREPTPPAG 188 PSP + A L+ S T PS HP LQ +P ++ P P P G Sbjct: 398 SGPSPFSMNANLPPPPALKPLSSLSTHHPPSAHPPPLQLMPQSQPLPSSPAQPPG 452 >gi|112382224 atrophin-1 like protein isoform a [Homo sapiens] Length = 1566 Score = 46.2 bits (108), Expect = 4e-05 Identities = 58/223 (26%), Positives = 77/223 (34%), Gaps = 46/223 (20%) Query: 58 PGHTAPRTQQPKPSGPSS-----HPREPPLPGAVTGGSLHFQEPP--PLGAATAGSRHRQ 110 P P T P+ S+ PRE PLP A H + PP P+ A H+ Sbjct: 889 PAAAYPHTSLQLPASQSALQSQQPPREQPLPPAPLAMP-HIKPPPTTPIPQLPAPQAHKH 947 Query: 111 KP----PSPGSRHRWEPPPPGAATATGSRHRREPPS---------PGATTAGSCHLRSSG 157 P PSP S + PPPP A S PPS P + S + G Sbjct: 948 PPHLSGPSPFSMNANLPPPP-ALKPLSSLSTHHPPSAHPPPLQLMPQSQPLPSSPAQPPG 1006 Query: 158 STGTRRAPSHPAA---------------LQVPYTREGP---------REPTPPAGPQGFA 193 T ++ P PA+ Q P+ GP TPPAGP A Sbjct: 1007 LTQSQNLPPPPASHPPTGLHQVAPQPPFAQHPFVPGGPPPITPPTCPSTSTPPAGPGTSA 1066 Query: 194 GSFCAEGSRRGAEVGWGKLEPQGTRRTGSLGVDSSPLSETLGP 236 C+ + G + G P T + +D + E+ P Sbjct: 1067 QPPCSGAAASGGSIAGGSSCPLPTVQIKEEALDDAEEPESPPP 1109 Score = 42.7 bits (99), Expect = 4e-04 Identities = 42/133 (31%), Positives = 53/133 (39%), Gaps = 11/133 (8%) Query: 58 PGHTAPRTQQPKPSGPSSHPREPPLPGAVTGGSLHFQEPPPLGAATAGSRHRQKPPSPGS 117 P AP P PS S+ P P LP G + PP G+ TA Q P +P + Sbjct: 739 PALQAPTGVTPAPS--SAPPGTPQLP--TPGPTPSATAVPPQGSPTASQAPNQ-PQAPTA 793 Query: 118 RHRWEPPPPGAATATGSRHRREPPSPGATTAGSCHLRSSGSTGTRRAPSHPAALQVPYTR 177 P P + H + PPSP S H TG+ PS P+ Q P Sbjct: 794 -----PVPHTHIQQAPALHPQRPPSPHPPPHPSPHPPLQPLTGSAGQPSAPSHAQPPLHG 848 Query: 178 EGPREP-TPPAGP 189 +GP P + AGP Sbjct: 849 QGPPGPHSLQAGP 861 Score = 33.1 bits (74), Expect = 0.36 Identities = 44/175 (25%), Positives = 62/175 (35%), Gaps = 47/175 (26%) Query: 61 TAPRTQQPKPSGPSSHPREPPLPGAVTGGSL--------HFQEPP-------PLGAATAG 105 +A + P + P H + PP P ++ G L F PP PLG + A Sbjct: 832 SAGQPSAPSHAQPPLHGQGPPGPHSLQAGPLLQHPGPPQPFGLPPQASQGQAPLGTSPAA 891 Query: 106 S---------------------RHRQKPPSPGSRHRWEPPP--PGAATATGSRHRREP-- 140 + R + PP+P + +PPP P H+ P Sbjct: 892 AYPHTSLQLPASQSALQSQQPPREQPLPPAPLAMPHIKPPPTTPIPQLPAPQAHKHPPHL 951 Query: 141 --PSPGATTAG---SCHLRSSGSTGTRRAPS-HPAALQ-VPYTREGPREPTPPAG 188 PSP + A L+ S T PS HP LQ +P ++ P P P G Sbjct: 952 SGPSPFSMNANLPPPPALKPLSSLSTHHPPSAHPPPLQLMPQSQPLPSSPAQPPG 1006 Database: hs.faa Posted date: Aug 4, 2009 4:42 PM Number of letters in database: 18,247,518 Number of sequences in database: 37,866 Lambda K H 0.316 0.135 0.445 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 20,193,543 Number of Sequences: 37866 Number of extensions: 1394559 Number of successful extensions: 13602 Number of sequences better than 10.0: 30 Number of HSP's better than 10.0 without gapping: 151 Number of HSP's successfully gapped in prelim test: 1390 Number of HSP's that attempted gapping in prelim test: 8623 Number of HSP's gapped (non-prelim): 4480 length of query: 333 length of database: 18,247,518 effective HSP length: 103 effective length of query: 230 effective length of database: 14,347,320 effective search space: 3299883600 effective search space used: 3299883600 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.