Guide to the Human Genome
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Search of human proteins with 239754655

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|239754655 PREDICTED: hypothetical protein [Homo sapiens]
         (76 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|239754655 PREDICTED: hypothetical protein [Homo sapiens]           162   4e-41
gi|239749201 PREDICTED: hypothetical protein XP_002346947 [Homo ...   162   4e-41
gi|239743281 PREDICTED: hypothetical protein XP_002342784 [Homo ...   162   4e-41
gi|239508964 PREDICTED: similar to FLJ00248 protein [Homo sapiens]    162   4e-41
gi|24586659 scavenger receptor class F, member 2 isoform 1 [Homo...    35   0.017
gi|33598937 scavenger receptor class F, member 2 isoform 2 [Homo...    35   0.017
gi|32490559 low density lipoprotein receptor-related protein 10 ...    34   0.022
gi|51702526 Wiskott-Aldrich syndrome gene-like protein [Homo sap...    33   0.065
gi|210032580 SET domain containing 1B [Homo sapiens]                   32   0.084
gi|39812378 RAN binding protein 9 [Homo sapiens]                       32   0.11 
gi|239754911 PREDICTED: hypothetical protein [Homo sapiens]            32   0.14 
gi|239749451 PREDICTED: hypothetical protein [Homo sapiens]            32   0.14 
gi|239743581 PREDICTED: hypothetical protein [Homo sapiens]            32   0.14 
gi|122114658 hypothetical protein LOC23053 [Homo sapiens]              32   0.14 
gi|146219843 Snf2-related CBP activator protein [Homo sapiens]         32   0.14 
gi|239757130 PREDICTED: hypothetical protein FLJ22184 [Homo sapi...    31   0.19 
gi|239751637 PREDICTED: hypothetical protein FLJ22184 [Homo sapi...    31   0.19 
gi|239746149 PREDICTED: hypothetical protein LOC80164 [Homo sapi...    31   0.19 
gi|66932986 filamin-binding LIM protein-1 isoform b [Homo sapiens]     31   0.19 
gi|66932982 filamin-binding LIM protein-1 isoform a [Homo sapiens]     31   0.19 
gi|41872374 polo-like kinase 3 [Homo sapiens]                          31   0.19 
gi|11056048 doublesex and mab-3 related transcription factor 3 [...    31   0.19 
gi|112421108 capicua homolog [Homo sapiens]                            31   0.19 
gi|28875786 FCH and double SH3 domains 1 [Homo sapiens]                31   0.19 
gi|46852161 methyl-CpG binding domain protein 6 [Homo sapiens]         31   0.19 
gi|157168329 formin 1 [Homo sapiens]                                   31   0.25 
gi|133922582 zinc finger protein 358 [Homo sapiens]                    31   0.25 
gi|192807323 SWI/SNF-related matrix-associated actin-dependent r...    30   0.32 
gi|192807320 SWI/SNF-related matrix-associated actin-dependent r...    30   0.32 
gi|192807318 SWI/SNF-related matrix-associated actin-dependent r...    30   0.32 

>gi|239754655 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 76

 Score =  162 bits (411), Expect = 4e-41
 Identities = 76/76 (100%), Positives = 76/76 (100%)

Query: 1  MMGSLKLLPPPPIMSARVLPRPSPSRGPSTAWLSGPELIALTGLLQMSQGEPRPSSSAVG 60
          MMGSLKLLPPPPIMSARVLPRPSPSRGPSTAWLSGPELIALTGLLQMSQGEPRPSSSAVG
Sbjct: 1  MMGSLKLLPPPPIMSARVLPRPSPSRGPSTAWLSGPELIALTGLLQMSQGEPRPSSSAVG 60

Query: 61 PPDHTSDPPSPYTHCP 76
          PPDHTSDPPSPYTHCP
Sbjct: 61 PPDHTSDPPSPYTHCP 76


>gi|239749201 PREDICTED: hypothetical protein XP_002346947 [Homo
          sapiens]
          Length = 76

 Score =  162 bits (411), Expect = 4e-41
 Identities = 76/76 (100%), Positives = 76/76 (100%)

Query: 1  MMGSLKLLPPPPIMSARVLPRPSPSRGPSTAWLSGPELIALTGLLQMSQGEPRPSSSAVG 60
          MMGSLKLLPPPPIMSARVLPRPSPSRGPSTAWLSGPELIALTGLLQMSQGEPRPSSSAVG
Sbjct: 1  MMGSLKLLPPPPIMSARVLPRPSPSRGPSTAWLSGPELIALTGLLQMSQGEPRPSSSAVG 60

Query: 61 PPDHTSDPPSPYTHCP 76
          PPDHTSDPPSPYTHCP
Sbjct: 61 PPDHTSDPPSPYTHCP 76


>gi|239743281 PREDICTED: hypothetical protein XP_002342784 [Homo
          sapiens]
          Length = 76

 Score =  162 bits (411), Expect = 4e-41
 Identities = 76/76 (100%), Positives = 76/76 (100%)

Query: 1  MMGSLKLLPPPPIMSARVLPRPSPSRGPSTAWLSGPELIALTGLLQMSQGEPRPSSSAVG 60
          MMGSLKLLPPPPIMSARVLPRPSPSRGPSTAWLSGPELIALTGLLQMSQGEPRPSSSAVG
Sbjct: 1  MMGSLKLLPPPPIMSARVLPRPSPSRGPSTAWLSGPELIALTGLLQMSQGEPRPSSSAVG 60

Query: 61 PPDHTSDPPSPYTHCP 76
          PPDHTSDPPSPYTHCP
Sbjct: 61 PPDHTSDPPSPYTHCP 76


>gi|239508964 PREDICTED: similar to FLJ00248 protein [Homo
          sapiens]
          Length = 76

 Score =  162 bits (411), Expect = 4e-41
 Identities = 76/76 (100%), Positives = 76/76 (100%)

Query: 1  MMGSLKLLPPPPIMSARVLPRPSPSRGPSTAWLSGPELIALTGLLQMSQGEPRPSSSAVG 60
          MMGSLKLLPPPPIMSARVLPRPSPSRGPSTAWLSGPELIALTGLLQMSQGEPRPSSSAVG
Sbjct: 1  MMGSLKLLPPPPIMSARVLPRPSPSRGPSTAWLSGPELIALTGLLQMSQGEPRPSSSAVG 60

Query: 61 PPDHTSDPPSPYTHCP 76
          PPDHTSDPPSPYTHCP
Sbjct: 61 PPDHTSDPPSPYTHCP 76


>gi|24586659 scavenger receptor class F, member 2 isoform 1 [Homo
           sapiens]
          Length = 870

 Score = 34.7 bits (78), Expect = 0.017
 Identities = 26/83 (31%), Positives = 32/83 (38%), Gaps = 11/83 (13%)

Query: 2   MGSLKLLPPPPIMSARVLPRPSPSRGPSTAWLSGPELIALTGLLQM-----SQGEPRPSS 56
           +G L L P P     R  P P P+  P  +W+ G    A  G         S+  P PS 
Sbjct: 645 IGGLSLSPSP---ERRKPPPPDPATKPKVSWIHGKHSAAAAGRAPSPPPPGSEAAPSPSK 701

Query: 57  SAVGPPD---HTSDPPSPYTHCP 76
               P D   HT +  SP T  P
Sbjct: 702 RKRTPSDKSAHTVEHGSPRTRDP 724



 Score = 28.1 bits (61), Expect = 1.6
 Identities = 13/32 (40%), Positives = 16/32 (50%)

Query: 9   PPPPIMSARVLPRPSPSRGPSTAWLSGPELIA 40
           P PP  + R +P  SP+R P      GPE  A
Sbjct: 801 PAPPQKAKRSVPPASPARAPPATETPGPEKAA 832


>gi|33598937 scavenger receptor class F, member 2 isoform 2 [Homo
           sapiens]
          Length = 865

 Score = 34.7 bits (78), Expect = 0.017
 Identities = 26/83 (31%), Positives = 32/83 (38%), Gaps = 11/83 (13%)

Query: 2   MGSLKLLPPPPIMSARVLPRPSPSRGPSTAWLSGPELIALTGLLQM-----SQGEPRPSS 56
           +G L L P P     R  P P P+  P  +W+ G    A  G         S+  P PS 
Sbjct: 640 IGGLSLSPSP---ERRKPPPPDPATKPKVSWIHGKHSAAAAGRAPSPPPPGSEAAPSPSK 696

Query: 57  SAVGPPD---HTSDPPSPYTHCP 76
               P D   HT +  SP T  P
Sbjct: 697 RKRTPSDKSAHTVEHGSPRTRDP 719



 Score = 28.1 bits (61), Expect = 1.6
 Identities = 13/32 (40%), Positives = 16/32 (50%)

Query: 9   PPPPIMSARVLPRPSPSRGPSTAWLSGPELIA 40
           P PP  + R +P  SP+R P      GPE  A
Sbjct: 796 PAPPQKAKRSVPPASPARAPPATETPGPEKAA 827


>gi|32490559 low density lipoprotein receptor-related protein 10
           precursor [Homo sapiens]
          Length = 713

 Score = 34.3 bits (77), Expect = 0.022
 Identities = 25/70 (35%), Positives = 33/70 (47%), Gaps = 10/70 (14%)

Query: 11  PPIMSARVLPRPSPSRGPSTA-WLSGP------ELIALTGLLQMSQGEPRPSSSAVGPPD 63
           PP+     LP  S S  P+T     GP      E   L+G++Q  +G   PS   +GPP 
Sbjct: 614 PPLPIKAPLPSASTSPAPTTVPEAPGPLPSLPLEPSLLSGVVQALRGRLLPS---LGPPG 670

Query: 64  HTSDPPSPYT 73
            T  PP P+T
Sbjct: 671 PTRSPPGPHT 680


>gi|51702526 Wiskott-Aldrich syndrome gene-like protein [Homo
           sapiens]
          Length = 505

 Score = 32.7 bits (73), Expect = 0.065
 Identities = 21/63 (33%), Positives = 24/63 (38%), Gaps = 14/63 (22%)

Query: 9   PPPPIMSARVLPRPSPSRGPSTAWLSGPELIALTGLLQMSQGEPRPSSSAVGPPDHTSDP 68
           PPPP    R  P P PSR P+ A    P                RPS +   PP +   P
Sbjct: 299 PPPPPARGRGAPPPPPSRAPTAAPPPPP--------------PSRPSVAVPPPPPNRMYP 344

Query: 69  PSP 71
           P P
Sbjct: 345 PPP 347



 Score = 26.2 bits (56), Expect = 6.1
 Identities = 24/68 (35%), Positives = 29/68 (42%), Gaps = 18/68 (26%)

Query: 4   SLKLLPPPPIMSARVLPRPSPSRGPSTAWLSGPELIALTGLLQMSQGEPRPSSSAVGPPD 63
           S+ + PPPP    R+ P P P+  PS+A  SGP               P PS   VGP  
Sbjct: 331 SVAVPPPPP---NRMYPPPPPAL-PSSA-PSGPP-------------PPPPSVLGVGPVA 372

Query: 64  HTSDPPSP 71
               PP P
Sbjct: 373 PPPPPPPP 380


>gi|210032580 SET domain containing 1B [Homo sapiens]
          Length = 1923

 Score = 32.3 bits (72), Expect = 0.084
 Identities = 25/77 (32%), Positives = 29/77 (37%), Gaps = 8/77 (10%)

Query: 3    GSLKLLPPPPIMSARVLPRPSPSRGPSTAWLSGPELIALTGL-LQMSQGEPRPSSSAVGP 61
            G++ L P PP       P  SP R P       PE   +  L LQ     PRP      P
Sbjct: 1235 GAMLLSPEPPAKEVEARPPLSPERAPEHDLEVEPEPPMMLPLPLQPPLPPPRPPRPPSPP 1294

Query: 62   PD-------HTSDPPSP 71
            P+       H S PP P
Sbjct: 1295 PEPETTDASHPSVPPEP 1311


>gi|39812378 RAN binding protein 9 [Homo sapiens]
          Length = 729

 Score = 32.0 bits (71), Expect = 0.11
 Identities = 22/70 (31%), Positives = 27/70 (38%), Gaps = 5/70 (7%)

Query: 7  LLPPPPIMSARVLPRPSPSRGPSTAWLSGPELIALTGLLQMSQGEPRPSSSAVGPPDHTS 66
          +LP PP +SA   P  SP  G       G  L A    L +    P P ++A  PP    
Sbjct: 34 VLPAPPAVSAGSSPAGSPGGG-----AGGEGLGAAAAALLLHPPPPPPPATAAPPPPPPP 88

Query: 67 DPPSPYTHCP 76
           PP      P
Sbjct: 89 PPPPASAAAP 98



 Score = 29.6 bits (65), Expect = 0.55
 Identities = 19/58 (32%), Positives = 22/58 (37%), Gaps = 11/58 (18%)

Query: 4   SLKLLPPPPIMSARVLPRPSPSRGPSTAWLSGPELIALTGLLQMSQGEPRPSSSAVGP 61
           +L L PPPP   A   P P P   P  A  + P           + G P P   A GP
Sbjct: 66  ALLLHPPPPPPPATAAPPPPPPPPPPPASAAAP-----------ASGPPAPPGLAAGP 112


>gi|239754911 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 297

 Score = 31.6 bits (70), Expect = 0.14
 Identities = 23/70 (32%), Positives = 32/70 (45%), Gaps = 19/70 (27%)

Query: 10  PPPIMSARVLPRPSPS--RGPSTAWLSGPELIALTGLLQMSQGEPRPSSSAVGPPDHTSD 67
           PPP+ ++    R S +  RG + +W  GP             G P  +  A  PPDH+  
Sbjct: 150 PPPLPTSCHWARRSCALRRGGAASWRRGP-------------GTPAAAPEAPSPPDHS-- 194

Query: 68  PPSPYT-HCP 76
            PSP+T  CP
Sbjct: 195 -PSPWTSRCP 203


>gi|239749451 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 297

 Score = 31.6 bits (70), Expect = 0.14
 Identities = 23/70 (32%), Positives = 32/70 (45%), Gaps = 19/70 (27%)

Query: 10  PPPIMSARVLPRPSPS--RGPSTAWLSGPELIALTGLLQMSQGEPRPSSSAVGPPDHTSD 67
           PPP+ ++    R S +  RG + +W  GP             G P  +  A  PPDH+  
Sbjct: 150 PPPLPTSCHWARRSCALRRGGAASWRRGP-------------GTPAAAPEAPSPPDHS-- 194

Query: 68  PPSPYT-HCP 76
            PSP+T  CP
Sbjct: 195 -PSPWTSRCP 203


>gi|239743581 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 297

 Score = 31.6 bits (70), Expect = 0.14
 Identities = 23/70 (32%), Positives = 32/70 (45%), Gaps = 19/70 (27%)

Query: 10  PPPIMSARVLPRPSPS--RGPSTAWLSGPELIALTGLLQMSQGEPRPSSSAVGPPDHTSD 67
           PPP+ ++    R S +  RG + +W  GP             G P  +  A  PPDH+  
Sbjct: 150 PPPLPTSCHWARRSCALRRGGAASWRRGP-------------GTPAAAPEAPSPPDHS-- 194

Query: 68  PPSPYT-HCP 76
            PSP+T  CP
Sbjct: 195 -PSPWTSRCP 203


>gi|122114658 hypothetical protein LOC23053 [Homo sapiens]
          Length = 1842

 Score = 31.6 bits (70), Expect = 0.14
 Identities = 20/53 (37%), Positives = 26/53 (49%), Gaps = 7/53 (13%)

Query: 10  PPPIMSARVLPRPSPSRGPSTAWLSGPELIALTGLLQMSQGEPRPSSSAVGPP 62
           PPP       P    SRGPST     P+     G +  S+G P P +++VGPP
Sbjct: 644 PPPC------PLHGGSRGPSTFLPEPPDTYEEDGGVYFSEG-PEPPTASVGPP 689


>gi|146219843 Snf2-related CBP activator protein [Homo sapiens]
          Length = 3230

 Score = 31.6 bits (70), Expect = 0.14
 Identities = 28/84 (33%), Positives = 40/84 (47%), Gaps = 14/84 (16%)

Query: 2    MGSLKLLPPP-PIMSARVLPRPSPSRGPSTAWLS----GPELI--------ALTGLLQMS 48
            +G + + PPP P +SA+  P P P   P++  +S    GP LI         L   LQ +
Sbjct: 1019 LGPVPVRPPPGPELSAQPTPGPVPQVLPASLMVSASPAGPPLIPASRPPGPVLLPPLQPN 1078

Query: 49   QGE-PRPSSSAVGPPDHTSDPPSP 71
             G  P+   S +G    TS PP+P
Sbjct: 1079 SGSLPQVLPSPLGVLSGTSRPPTP 1102


>gi|239757130 PREDICTED: hypothetical protein FLJ22184 [Homo
           sapiens]
          Length = 855

 Score = 31.2 bits (69), Expect = 0.19
 Identities = 25/73 (34%), Positives = 34/73 (46%), Gaps = 13/73 (17%)

Query: 5   LKLLPPPPIMSARVLPRPSPSRGPSTAWLSGPELIALTGLLQMSQGEPRP----SSSAVG 60
           L++ P PP       PR  P+ GP T+ +SGP L      L ++ G P P     SS + 
Sbjct: 571 LQVPPSPPASPTLQAPRRPPTPGPDTS-VSGPRL-----TLALAPGPPPPPSRSPSSTLS 624

Query: 61  PPD---HTSDPPS 70
            PD   H+S   S
Sbjct: 625 GPDLAGHSSSATS 637


>gi|239751637 PREDICTED: hypothetical protein FLJ22184 [Homo
           sapiens]
          Length = 1124

 Score = 31.2 bits (69), Expect = 0.19
 Identities = 25/73 (34%), Positives = 34/73 (46%), Gaps = 13/73 (17%)

Query: 5   LKLLPPPPIMSARVLPRPSPSRGPSTAWLSGPELIALTGLLQMSQGEPRP----SSSAVG 60
           L++ P PP       PR  P+ GP T+ +SGP L      L ++ G P P     SS + 
Sbjct: 840 LQVPPSPPASPTLQAPRRPPTPGPDTS-VSGPRL-----TLALAPGPPPPPSRSPSSTLS 893

Query: 61  PPD---HTSDPPS 70
            PD   H+S   S
Sbjct: 894 GPDLAGHSSSATS 906



 Score = 26.9 bits (58), Expect = 3.5
 Identities = 21/69 (30%), Positives = 27/69 (39%), Gaps = 7/69 (10%)

Query: 7   LLPPPPIMSARVLPRPSPSRGPSTAWLSGPELIALTGLLQMSQGEPRPSSSAV-GPPDHT 65
           L P PP+ +   L  PSPS  PS   L  P           SQ  P  ++  +  PP   
Sbjct: 331 LPPSPPLATPLPLAPPSPSAPPSLQTLPSPP------ATPPSQAPPSMTTPPMQAPPSLQ 384

Query: 66  SDPPSPYTH 74
           + PP    H
Sbjct: 385 TIPPIQVPH 393


>gi|239746149 PREDICTED: hypothetical protein LOC80164 [Homo
           sapiens]
          Length = 816

 Score = 31.2 bits (69), Expect = 0.19
 Identities = 25/73 (34%), Positives = 34/73 (46%), Gaps = 13/73 (17%)

Query: 5   LKLLPPPPIMSARVLPRPSPSRGPSTAWLSGPELIALTGLLQMSQGEPRP----SSSAVG 60
           L++ P PP       PR  P+ GP T+ +SGP L      L ++ G P P     SS + 
Sbjct: 532 LQVPPSPPASPTLQAPRRPPTPGPDTS-VSGPRL-----TLALAPGPPPPPSRSPSSTLS 585

Query: 61  PPD---HTSDPPS 70
            PD   H+S   S
Sbjct: 586 GPDLAGHSSSATS 598


>gi|66932986 filamin-binding LIM protein-1 isoform b [Homo sapiens]
          Length = 374

 Score = 31.2 bits (69), Expect = 0.19
 Identities = 21/61 (34%), Positives = 27/61 (44%), Gaps = 5/61 (8%)

Query: 1   MMGSLKLLPPPPIMSARVLPRPSPSRGPSTAWLSGPELIALTGLLQMSQGEPRPSSSAVG 60
           ++  L LLPPPP     +LP    +  P      G  LIA    L +S   P P + A G
Sbjct: 97  VLPDLDLLPPPPPPPPVLLPSEEEAPAP-----MGASLIADLEQLHLSPPPPPPQAPAEG 151

Query: 61  P 61
           P
Sbjct: 152 P 152


>gi|66932982 filamin-binding LIM protein-1 isoform a [Homo sapiens]
          Length = 373

 Score = 31.2 bits (69), Expect = 0.19
 Identities = 21/61 (34%), Positives = 27/61 (44%), Gaps = 5/61 (8%)

Query: 1   MMGSLKLLPPPPIMSARVLPRPSPSRGPSTAWLSGPELIALTGLLQMSQGEPRPSSSAVG 60
           ++  L LLPPPP     +LP    +  P      G  LIA    L +S   P P + A G
Sbjct: 97  VLPDLDLLPPPPPPPPVLLPSEEEAPAP-----MGASLIADLEQLHLSPPPPPPQAPAEG 151

Query: 61  P 61
           P
Sbjct: 152 P 152


>gi|41872374 polo-like kinase 3 [Homo sapiens]
          Length = 646

 Score = 31.2 bits (69), Expect = 0.19
 Identities = 16/37 (43%), Positives = 17/37 (45%)

Query: 8  LPPPPIMSARVLPRPSPSRGPSTAWLSGPELIALTGL 44
          L P P   A   P P    GP  + L GPEL  L GL
Sbjct: 8  LSPRPFQRAAAAPAPPAGPGPPPSALRGPELEMLAGL 44


>gi|11056048 doublesex and mab-3 related transcription factor 3
           [Homo sapiens]
          Length = 472

 Score = 31.2 bits (69), Expect = 0.19
 Identities = 22/67 (32%), Positives = 31/67 (46%), Gaps = 3/67 (4%)

Query: 4   SLKLLP-PPPIMSARVLPRPSPSRGPSTAWLSGP--ELIALTGLLQMSQGEPRPSSSAVG 60
           SL+ LP PPP   A   P+P P+  PS      P  EL A   L   ++ +P    + + 
Sbjct: 90  SLRALPGPPPPGDAVAAPQPPPASQPSQPQPPRPAAELAAAAALRWTAEPQPGALQAQLA 149

Query: 61  PPDHTSD 67
            PD T +
Sbjct: 150 KPDLTEE 156


>gi|112421108 capicua homolog [Homo sapiens]
          Length = 1608

 Score = 31.2 bits (69), Expect = 0.19
 Identities = 22/65 (33%), Positives = 27/65 (41%), Gaps = 6/65 (9%)

Query: 8    LPPPPIMSARVLPRPSPSRGPSTAWLSGPELIALTGLLQMSQGEPRPSSSAVGPPDHTSD 67
            +PPP   +A   P PSP+ GP     S       +G  Q +   P P  S  G P     
Sbjct: 1537 VPPPTGTAAAPAPTPSPAGGPDPTSPSSD-----SGTAQAAPPLPPPPESGPGQPGWEGA 1591

Query: 68   P-PSP 71
            P PSP
Sbjct: 1592 PQPSP 1596


>gi|28875786 FCH and double SH3 domains 1 [Homo sapiens]
          Length = 690

 Score = 31.2 bits (69), Expect = 0.19
 Identities = 25/80 (31%), Positives = 30/80 (37%), Gaps = 15/80 (18%)

Query: 9   PPPPIMS--ARVLPRPSPSR-----------GPSTAWLSGPELIALTGLLQMSQGEPRPS 55
           P PP +S   ++LP PSP             GP    L G + +   G L M     RP 
Sbjct: 611 PGPPELSDPEQMLPSPSPPSFSPPAPTSVLDGPPAPVLPGDKALDFPGFLDMMAPRLRPM 670

Query: 56  SSAVGPPDHTSDP--PSPYT 73
                PP    DP  P P T
Sbjct: 671 RPPPPPPAKAPDPGHPDPLT 690


>gi|46852161 methyl-CpG binding domain protein 6 [Homo sapiens]
          Length = 1003

 Score = 31.2 bits (69), Expect = 0.19
 Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 1/54 (1%)

Query: 2   MGSLKLLPPPPIMSARVLPRPSPSRGPSTAWLSGPELIALTGLLQMSQGEPRPS 55
           MG+    P PP+      P PSP +G + +    P ++     L +S G+P PS
Sbjct: 501 MGAGPACPLPPLAGGEAFPFPSPEQGLALSGAGFPGMLGALP-LPLSLGQPPPS 553



 Score = 30.0 bits (66), Expect = 0.42
 Identities = 24/76 (31%), Positives = 33/76 (43%), Gaps = 12/76 (15%)

Query: 1   MMGSLKLLPPPPIMSARVLPRPSPSRGPSTAWLSGPELIALTGLLQMSQGEPRPSSSAVG 60
           ++GS   LPPPP +S+   P+P   R P    L G      +G L    G P P +++  
Sbjct: 432 LLGSDAHLPPPPTLSSGSPPQP---RHPIQPSLPG----TTSGSLSSVPGAPAPPAASKA 484

Query: 61  PPDHTSDPPSPYTHCP 76
           P       PSP    P
Sbjct: 485 PV-----VPSPVLQSP 495



 Score = 27.7 bits (60), Expect = 2.1
 Identities = 25/86 (29%), Positives = 35/86 (40%), Gaps = 22/86 (25%)

Query: 7   LLPPPPIMSARVLPRPSPSRG--PSTAWLSGPELIALTGLLQMSQGEP------------ 52
           L PP P++S ++  +  P  G  P  +  S P L  L   LQ+   +P            
Sbjct: 762 LQPPGPLLSGQLGLQLLPGGGAPPPLSEASSP-LACLLQSLQIPPEQPEAPCLPPESPAS 820

Query: 53  -------RPSSSAVGPPDHTSDPPSP 71
                  RP  SA+ PP  + DPP P
Sbjct: 821 ALEPEPARPPLSALAPPHGSPDPPVP 846


>gi|157168329 formin 1 [Homo sapiens]
          Length = 1196

 Score = 30.8 bits (68), Expect = 0.25
 Identities = 22/68 (32%), Positives = 27/68 (39%), Gaps = 8/68 (11%)

Query: 9   PPPPIMSARVLPRPSPSRGPSTAWLSGPELIALTGLLQMSQGEPRPSSSAVGPPDHTSDP 68
           PPPP+ S      P+P   P +A   GP L             P P  S+ GPP     P
Sbjct: 654 PPPPLPSGLGSLSPAPPMPPVSA---GPPLPP-----PPPPPPPLPPPSSAGPPPPPPPP 705

Query: 69  PSPYTHCP 76
           P P +  P
Sbjct: 706 PLPNSPAP 713


>gi|133922582 zinc finger protein 358 [Homo sapiens]
          Length = 568

 Score = 30.8 bits (68), Expect = 0.25
 Identities = 22/69 (31%), Positives = 30/69 (43%), Gaps = 5/69 (7%)

Query: 8   LPPP---PIMSARVLPRPSP--SRGPSTAWLSGPELIALTGLLQMSQGEPRPSSSAVGPP 62
           LP P   P+  +R  P P+P  S  P     +GP+L+    L  +   +P P  S    P
Sbjct: 471 LPDPSSKPLPGSRSTPSPTPVESSDPKAGHDAGPDLVPSPDLDPVPSPDPDPVPSPDPNP 530

Query: 63  DHTSDPPSP 71
               DP SP
Sbjct: 531 VSCPDPCSP 539


>gi|192807323 SWI/SNF-related matrix-associated actin-dependent
          regulator of chromatin a4 isoform A [Homo sapiens]
          Length = 1679

 Score = 30.4 bits (67), Expect = 0.32
 Identities = 19/59 (32%), Positives = 22/59 (37%), Gaps = 1/59 (1%)

Query: 10 PPPIMSARVLPRPSPSRGPSTAWLSGPELIALTGLLQMSQGEPRPSSSAVGPPDHTSDP 68
          P P +     P PSP  GPS   + GP      G      G P P   + G P  T  P
Sbjct: 4  PDPPLGGTPRPGPSPGPGPSPGAMLGPSPGPSPGSAHSMMG-PSPGPPSAGHPIPTQGP 61



 Score = 29.3 bits (64), Expect = 0.72
 Identities = 21/77 (27%), Positives = 28/77 (36%), Gaps = 2/77 (2%)

Query: 1   MMGSLKLLPPPPIMSARVLPRPSPSRGPSTAWLSGPELIALTGLLQMSQGEPRPSSSAVG 60
           M   +  LPPP + +    P P P  GP     + P      G+   +   P PS    G
Sbjct: 213 MQQQMPTLPPPSVSATGPGPGPGPGPGPGPG-PAPPNYSRPHGMGGPNMPPPGPSGVPPG 271

Query: 61  PPDH-TSDPPSPYTHCP 76
            P      PP P+   P
Sbjct: 272 MPGQPPGGPPKPWPEGP 288


>gi|192807320 SWI/SNF-related matrix-associated actin-dependent
          regulator of chromatin a4 isoform F [Homo sapiens]
          Length = 1613

 Score = 30.4 bits (67), Expect = 0.32
 Identities = 19/59 (32%), Positives = 22/59 (37%), Gaps = 1/59 (1%)

Query: 10 PPPIMSARVLPRPSPSRGPSTAWLSGPELIALTGLLQMSQGEPRPSSSAVGPPDHTSDP 68
          P P +     P PSP  GPS   + GP      G      G P P   + G P  T  P
Sbjct: 4  PDPPLGGTPRPGPSPGPGPSPGAMLGPSPGPSPGSAHSMMG-PSPGPPSAGHPIPTQGP 61



 Score = 29.3 bits (64), Expect = 0.72
 Identities = 21/77 (27%), Positives = 28/77 (36%), Gaps = 2/77 (2%)

Query: 1   MMGSLKLLPPPPIMSARVLPRPSPSRGPSTAWLSGPELIALTGLLQMSQGEPRPSSSAVG 60
           M   +  LPPP + +    P P P  GP     + P      G+   +   P PS    G
Sbjct: 213 MQQQMPTLPPPSVSATGPGPGPGPGPGPGPG-PAPPNYSRPHGMGGPNMPPPGPSGVPPG 271

Query: 61  PPDH-TSDPPSPYTHCP 76
            P      PP P+   P
Sbjct: 272 MPGQPPGGPPKPWPEGP 288


>gi|192807318 SWI/SNF-related matrix-associated actin-dependent
          regulator of chromatin a4 isoform E [Homo sapiens]
          Length = 1614

 Score = 30.4 bits (67), Expect = 0.32
 Identities = 19/59 (32%), Positives = 22/59 (37%), Gaps = 1/59 (1%)

Query: 10 PPPIMSARVLPRPSPSRGPSTAWLSGPELIALTGLLQMSQGEPRPSSSAVGPPDHTSDP 68
          P P +     P PSP  GPS   + GP      G      G P P   + G P  T  P
Sbjct: 4  PDPPLGGTPRPGPSPGPGPSPGAMLGPSPGPSPGSAHSMMG-PSPGPPSAGHPIPTQGP 61



 Score = 29.3 bits (64), Expect = 0.72
 Identities = 21/77 (27%), Positives = 28/77 (36%), Gaps = 2/77 (2%)

Query: 1   MMGSLKLLPPPPIMSARVLPRPSPSRGPSTAWLSGPELIALTGLLQMSQGEPRPSSSAVG 60
           M   +  LPPP + +    P P P  GP     + P      G+   +   P PS    G
Sbjct: 213 MQQQMPTLPPPSVSATGPGPGPGPGPGPGPG-PAPPNYSRPHGMGGPNMPPPGPSGVPPG 271

Query: 61  PPDH-TSDPPSPYTHCP 76
            P      PP P+   P
Sbjct: 272 MPGQPPGGPPKPWPEGP 288


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.312    0.133    0.423 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,066,289
Number of Sequences: 37866
Number of extensions: 298640
Number of successful extensions: 2277
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 78
Number of HSP's successfully gapped in prelim test: 242
Number of HSP's that attempted gapping in prelim test: 1891
Number of HSP's gapped (non-prelim): 589
length of query: 76
length of database: 18,247,518
effective HSP length: 48
effective length of query: 28
effective length of database: 16,429,950
effective search space: 460038600
effective search space used: 460038600
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 55 (25.8 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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