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Search of human proteins with 119220603
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|119220603 ring finger protein 208 [Homo sapiens]
(261 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|119220603 ring finger protein 208 [Homo sapiens] 557 e-159
gi|153252110 ring finger protein 183 [Homo sapiens] 58 7e-09
gi|22749455 ring finger protein 182 [Homo sapiens] 57 1e-08
gi|153791514 tripartite motif-containing 32 [Homo sapiens] 53 2e-07
gi|153792582 tripartite motif-containing 32 [Homo sapiens] 53 2e-07
gi|239752655 PREDICTED: hypothetical protein [Homo sapiens] 49 6e-06
gi|239747208 PREDICTED: hypothetical protein [Homo sapiens] 49 6e-06
gi|239740999 PREDICTED: hypothetical protein [Homo sapiens] 49 6e-06
gi|32454739 tripartite motif-containing 3 [Homo sapiens] 47 2e-05
gi|32454737 tripartite motif-containing 3 [Homo sapiens] 47 2e-05
gi|194248081 tripartite motif-containing 2 isoform 2 [Homo sapiens] 47 2e-05
gi|194248079 tripartite motif-containing 2 isoform 1 [Homo sapiens] 47 2e-05
gi|55953112 ret finger protein 2 isoform 2 [Homo sapiens] 47 2e-05
gi|47132524 ret finger protein 2 isoform 1 [Homo sapiens] 47 2e-05
gi|16445412 ret finger protein 2 isoform 1 [Homo sapiens] 47 2e-05
gi|47132521 ret finger protein 2 isoform 1 [Homo sapiens] 47 2e-05
gi|169214080 PREDICTED: hypothetical protein LOC646862 [Homo sap... 46 4e-05
gi|169214500 PREDICTED: hypothetical protein LOC646862 [Homo sap... 46 4e-05
gi|169213453 PREDICTED: hypothetical protein LOC646862 [Homo sap... 46 4e-05
gi|27734873 ring finger protein 152 [Homo sapiens] 46 4e-05
gi|222446607 SH3 domain containing ring finger 2 [Homo sapiens] 46 4e-05
gi|40255283 NHL repeat containing 1 [Homo sapiens] 44 2e-04
gi|47419911 transcriptional intermediary factor 1 alpha isoform ... 43 3e-04
gi|47419909 transcriptional intermediary factor 1 alpha isoform ... 43 3e-04
gi|73695473 roquin [Homo sapiens] 42 7e-04
gi|9506663 ring finger protein 186 [Homo sapiens] 41 0.001
gi|124487387 ring finger protein 207 [Homo sapiens] 41 0.001
gi|150010572 SH3 domain containing ring finger 3 [Homo sapiens] 41 0.001
gi|15208643 ADP-ribosylation factor domain protein 1 isoform gam... 40 0.002
gi|15208641 ADP-ribosylation factor domain protein 1 isoform bet... 40 0.002
>gi|119220603 ring finger protein 208 [Homo sapiens]
Length = 261
Score = 557 bits (1435), Expect = e-159
Identities = 261/261 (100%), Positives = 261/261 (100%)
Query: 1 MPSDPGPEAGSGWPGLLMSCLKGPHVILKMEAMKIVHPEKFPELPAAPCFPPAPRPTPTL 60
MPSDPGPEAGSGWPGLLMSCLKGPHVILKMEAMKIVHPEKFPELPAAPCFPPAPRPTPTL
Sbjct: 1 MPSDPGPEAGSGWPGLLMSCLKGPHVILKMEAMKIVHPEKFPELPAAPCFPPAPRPTPTL 60
Query: 61 APKRAWPSDTEIIVNQACGGDMPALEGAPHTPPLPRRPRKGSSELGFPRVAPEDEVIVNQ 120
APKRAWPSDTEIIVNQACGGDMPALEGAPHTPPLPRRPRKGSSELGFPRVAPEDEVIVNQ
Sbjct: 61 APKRAWPSDTEIIVNQACGGDMPALEGAPHTPPLPRRPRKGSSELGFPRVAPEDEVIVNQ 120
Query: 121 YVIRPGPSASAASSAAAGEPLECPTCGHSYNVTQRRPRVLSCLHSVCEQCLQILYESCPK 180
YVIRPGPSASAASSAAAGEPLECPTCGHSYNVTQRRPRVLSCLHSVCEQCLQILYESCPK
Sbjct: 121 YVIRPGPSASAASSAAAGEPLECPTCGHSYNVTQRRPRVLSCLHSVCEQCLQILYESCPK 180
Query: 181 YKFISCPTCRRETVLFTDYGLAALAVNTSILSRLPPEALTAPSGGQWGAEPEGSCYQTFR 240
YKFISCPTCRRETVLFTDYGLAALAVNTSILSRLPPEALTAPSGGQWGAEPEGSCYQTFR
Sbjct: 181 YKFISCPTCRRETVLFTDYGLAALAVNTSILSRLPPEALTAPSGGQWGAEPEGSCYQTFR 240
Query: 241 QYCGAACTCHVRNPLSACSIM 261
QYCGAACTCHVRNPLSACSIM
Sbjct: 241 QYCGAACTCHVRNPLSACSIM 261
>gi|153252110 ring finger protein 183 [Homo sapiens]
Length = 192
Score = 58.2 bits (139), Expect = 7e-09
Identities = 27/73 (36%), Positives = 41/73 (56%)
Query: 142 ECPTCGHSYNVTQRRPRVLSCLHSVCEQCLQILYESCPKYKFISCPTCRRETVLFTDYGL 201
ECP C + +N T P++L C HS C +CL L P + + CP CR+ TVL + +
Sbjct: 12 ECPVCWNPFNNTFHTPKMLDCCHSFCVECLAHLSLVTPARRRLLCPLCRQPTVLASGQPV 71
Query: 202 AALAVNTSILSRL 214
L +T++L+ L
Sbjct: 72 TDLPTDTAMLALL 84
>gi|22749455 ring finger protein 182 [Homo sapiens]
Length = 247
Score = 57.4 bits (137), Expect = 1e-08
Identities = 36/89 (40%), Positives = 49/89 (55%), Gaps = 3/89 (3%)
Query: 127 PSASAASSAAAGEPLECPTCGHSYNVTQRRPRVLSCLHSVCEQCL-QILYESCPKYKFIS 185
P A S A+ E LEC C + YN+ QR+P+VL C H VC +CL +I+ I
Sbjct: 5 PPEDTAESQASDE-LECKICYNRYNLKQRKPKVLECCHRVCAKCLYKIIDFGDSPQGVIV 63
Query: 186 CPTCRRETVLFTDYGLAALAVNTSILSRL 214
CP CR ET L D +++L + +IL L
Sbjct: 64 CPFCRFETCL-PDDEVSSLPDDNNILVNL 91
>gi|153791514 tripartite motif-containing 32 [Homo sapiens]
Length = 653
Score = 53.1 bits (126), Expect = 2e-07
Identities = 32/97 (32%), Positives = 48/97 (49%), Gaps = 5/97 (5%)
Query: 128 SASAASSAAAGEPLECPTCGHSYNVTQRRPRVLSCLHSVCEQCLQILYESCPKYKFISCP 187
+AS + A E LECP C S+ Q RP++L C H++C QCL+ L S + CP
Sbjct: 5 AASHLNLDALREVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLAS--SINGVRCP 62
Query: 188 TCRRETVLFTDYGLAALAVNTSILSRLPPEALTAPSG 224
C + T + + L L N ++L + L+ G
Sbjct: 63 FCSKITRITS---LTQLTDNLTVLKIIDTAGLSEAVG 96
>gi|153792582 tripartite motif-containing 32 [Homo sapiens]
Length = 653
Score = 53.1 bits (126), Expect = 2e-07
Identities = 32/97 (32%), Positives = 48/97 (49%), Gaps = 5/97 (5%)
Query: 128 SASAASSAAAGEPLECPTCGHSYNVTQRRPRVLSCLHSVCEQCLQILYESCPKYKFISCP 187
+AS + A E LECP C S+ Q RP++L C H++C QCL+ L S + CP
Sbjct: 5 AASHLNLDALREVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLAS--SINGVRCP 62
Query: 188 TCRRETVLFTDYGLAALAVNTSILSRLPPEALTAPSG 224
C + T + + L L N ++L + L+ G
Sbjct: 63 FCSKITRITS---LTQLTDNLTVLKIIDTAGLSEAVG 96
>gi|239752655 PREDICTED: hypothetical protein [Homo sapiens]
Length = 249
Score = 48.5 bits (114), Expect = 6e-06
Identities = 39/135 (28%), Positives = 54/135 (40%), Gaps = 26/135 (19%)
Query: 90 HTPPLPRRPRKGSSELGFPRVAPEDEVIVNQYVIRPGPSASAASSAAAGE-----PLECP 144
HT P PR+ SS PR P + S S G PLEC
Sbjct: 9 HTAVPP--PRRSSSIASMPR--------------SPSSAGSPRSPGTPGSERVASPLECS 52
Query: 145 TCGHSYNVTQRRPRVLSCLHSVCEQCLQILYESCPKYK----FISCPTCRRETVLFTDYG 200
C Y+ + P+ LSC H C +CL L + P + + CP CR+ T + G
Sbjct: 53 ICFSGYDNIFKTPKELSCTHVFCLECLARLAAAQPVGRPGGEAVPCPFCRQPTAV-PPAG 111
Query: 201 LAALAVNTSILSRLP 215
AL + + +R+P
Sbjct: 112 APALCTSRQLQARMP 126
>gi|239747208 PREDICTED: hypothetical protein [Homo sapiens]
Length = 249
Score = 48.5 bits (114), Expect = 6e-06
Identities = 39/135 (28%), Positives = 54/135 (40%), Gaps = 26/135 (19%)
Query: 90 HTPPLPRRPRKGSSELGFPRVAPEDEVIVNQYVIRPGPSASAASSAAAGE-----PLECP 144
HT P PR+ SS PR P + S S G PLEC
Sbjct: 9 HTAVPP--PRRSSSIASMPR--------------SPSSAGSPRSPGTPGSERVASPLECS 52
Query: 145 TCGHSYNVTQRRPRVLSCLHSVCEQCLQILYESCPKYK----FISCPTCRRETVLFTDYG 200
C Y+ + P+ LSC H C +CL L + P + + CP CR+ T + G
Sbjct: 53 ICFSGYDNIFKTPKELSCTHVFCLECLARLAAAQPVGRPGGEAVPCPFCRQPTAV-PPAG 111
Query: 201 LAALAVNTSILSRLP 215
AL + + +R+P
Sbjct: 112 APALCTSRQLQARMP 126
>gi|239740999 PREDICTED: hypothetical protein [Homo sapiens]
Length = 249
Score = 48.5 bits (114), Expect = 6e-06
Identities = 39/135 (28%), Positives = 54/135 (40%), Gaps = 26/135 (19%)
Query: 90 HTPPLPRRPRKGSSELGFPRVAPEDEVIVNQYVIRPGPSASAASSAAAGE-----PLECP 144
HT P PR+ SS PR P + S S G PLEC
Sbjct: 9 HTAVPP--PRRSSSIASMPR--------------SPSSAGSPRSPGTPGSERVASPLECS 52
Query: 145 TCGHSYNVTQRRPRVLSCLHSVCEQCLQILYESCPKYK----FISCPTCRRETVLFTDYG 200
C Y+ + P+ LSC H C +CL L + P + + CP CR+ T + G
Sbjct: 53 ICFSGYDNIFKTPKELSCTHVFCLECLARLAAAQPVGRPGGEAVPCPFCRQPTAV-PPAG 111
Query: 201 LAALAVNTSILSRLP 215
AL + + +R+P
Sbjct: 112 APALCTSRQLQARMP 126
>gi|32454739 tripartite motif-containing 3 [Homo sapiens]
Length = 744
Score = 47.0 bits (110), Expect = 2e-05
Identities = 34/107 (31%), Positives = 49/107 (45%), Gaps = 12/107 (11%)
Query: 125 PGPSASAASSAAAGEPLECPTCGHSYNVTQRRPRVLSCLHSVCEQCLQILYESCPKYKFI 184
PGP + L C C Y P+VL CLH+ CE+CLQ + + +
Sbjct: 8 PGPEVQPMDK----QFLVCSICLDRYQC----PKVLPCLHTFCERCLQNYIPA--QSLTL 57
Query: 185 SCPTCRRETVLFTDYGLAALAVNTSILSRLPPEALTAPSGGQWGAEP 231
SCP CR+ ++L + G++AL N +S L AP G +P
Sbjct: 58 SCPVCRQTSIL-PEQGVSALQ-NNFFISSLMEAMQQAPDGAHDPEDP 102
>gi|32454737 tripartite motif-containing 3 [Homo sapiens]
Length = 744
Score = 47.0 bits (110), Expect = 2e-05
Identities = 34/107 (31%), Positives = 49/107 (45%), Gaps = 12/107 (11%)
Query: 125 PGPSASAASSAAAGEPLECPTCGHSYNVTQRRPRVLSCLHSVCEQCLQILYESCPKYKFI 184
PGP + L C C Y P+VL CLH+ CE+CLQ + + +
Sbjct: 8 PGPEVQPMDK----QFLVCSICLDRYQC----PKVLPCLHTFCERCLQNYIPA--QSLTL 57
Query: 185 SCPTCRRETVLFTDYGLAALAVNTSILSRLPPEALTAPSGGQWGAEP 231
SCP CR+ ++L + G++AL N +S L AP G +P
Sbjct: 58 SCPVCRQTSIL-PEQGVSALQ-NNFFISSLMEAMQQAPDGAHDPEDP 102
>gi|194248081 tripartite motif-containing 2 isoform 2 [Homo sapiens]
Length = 744
Score = 47.0 bits (110), Expect = 2e-05
Identities = 39/124 (31%), Positives = 59/124 (47%), Gaps = 26/124 (20%)
Query: 141 LECPTCGHSYNVTQRRPRVLSCLHSVCEQCLQILYESCPKYKF-ISCPTCRRETVLFTDY 199
L C C Y + P+VL CLH+ CE+CLQ P + +SCP CR+ ++L +
Sbjct: 21 LICSICLERY----KNPKVLPCLHTFCERCLQ---NYIPAHSLTLSCPVCRQTSIL-PEK 72
Query: 200 GLAALAVN------TSILSRLPP---------EALTAPSGGQWGAEP--EGSCYQTFRQY 242
G+AAL N +L R P E +TA + G+ + P +G+ + + Q
Sbjct: 73 GVAALQNNFFITNLMDVLQRTPGSNAEESSILETVTAVAAGKPLSCPNHDGNVMEFYCQS 132
Query: 243 CGAA 246
C A
Sbjct: 133 CETA 136
Score = 28.1 bits (61), Expect = 8.1
Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 10/54 (18%)
Query: 125 PGPSASAAS------SAAAGEPLECPTCGHSYNVTQRRPRVLSCLHSVCEQCLQ 172
PG +A +S + AAG+PL CP H NV + + SC ++C +C +
Sbjct: 94 PGSNAEESSILETVTAVAAGKPLSCP--NHDGNVMEFYCQ--SCETAMCRECTE 143
>gi|194248079 tripartite motif-containing 2 isoform 1 [Homo sapiens]
Length = 771
Score = 47.0 bits (110), Expect = 2e-05
Identities = 39/124 (31%), Positives = 59/124 (47%), Gaps = 26/124 (20%)
Query: 141 LECPTCGHSYNVTQRRPRVLSCLHSVCEQCLQILYESCPKYKF-ISCPTCRRETVLFTDY 199
L C C Y + P+VL CLH+ CE+CLQ P + +SCP CR+ ++L +
Sbjct: 48 LICSICLERY----KNPKVLPCLHTFCERCLQ---NYIPAHSLTLSCPVCRQTSIL-PEK 99
Query: 200 GLAALAVN------TSILSRLPP---------EALTAPSGGQWGAEP--EGSCYQTFRQY 242
G+AAL N +L R P E +TA + G+ + P +G+ + + Q
Sbjct: 100 GVAALQNNFFITNLMDVLQRTPGSNAEESSILETVTAVAAGKPLSCPNHDGNVMEFYCQS 159
Query: 243 CGAA 246
C A
Sbjct: 160 CETA 163
Score = 28.1 bits (61), Expect = 8.1
Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 10/54 (18%)
Query: 125 PGPSASAAS------SAAAGEPLECPTCGHSYNVTQRRPRVLSCLHSVCEQCLQ 172
PG +A +S + AAG+PL CP H NV + + SC ++C +C +
Sbjct: 121 PGSNAEESSILETVTAVAAGKPLSCP--NHDGNVMEFYCQ--SCETAMCRECTE 170
>gi|55953112 ret finger protein 2 isoform 2 [Homo sapiens]
Length = 410
Score = 46.6 bits (109), Expect = 2e-05
Identities = 27/77 (35%), Positives = 40/77 (51%), Gaps = 12/77 (15%)
Query: 139 EPLECPTCGHSYNVTQRRPRVLSCLHSVCEQCLQILYESCPKYKF-----ISCPTCRRET 193
E L CP C ++ PRVL C H+ C++CL+ + E + CPTCR+ET
Sbjct: 9 EDLTCPICCSLFD----DPRVLPCSHNFCKKCLEGILEGSVRNSLWRPAPFKCPTCRKET 64
Query: 194 VLFTDYGLAALAVNTSI 210
+ G+ +L VN S+
Sbjct: 65 ---SATGINSLQVNYSL 78
>gi|47132524 ret finger protein 2 isoform 1 [Homo sapiens]
Length = 407
Score = 46.6 bits (109), Expect = 2e-05
Identities = 27/77 (35%), Positives = 40/77 (51%), Gaps = 12/77 (15%)
Query: 139 EPLECPTCGHSYNVTQRRPRVLSCLHSVCEQCLQILYESCPKYKF-----ISCPTCRRET 193
E L CP C ++ PRVL C H+ C++CL+ + E + CPTCR+ET
Sbjct: 6 EDLTCPICCSLFD----DPRVLPCSHNFCKKCLEGILEGSVRNSLWRPAPFKCPTCRKET 61
Query: 194 VLFTDYGLAALAVNTSI 210
+ G+ +L VN S+
Sbjct: 62 ---SATGINSLQVNYSL 75
>gi|16445412 ret finger protein 2 isoform 1 [Homo sapiens]
Length = 407
Score = 46.6 bits (109), Expect = 2e-05
Identities = 27/77 (35%), Positives = 40/77 (51%), Gaps = 12/77 (15%)
Query: 139 EPLECPTCGHSYNVTQRRPRVLSCLHSVCEQCLQILYESCPKYKF-----ISCPTCRRET 193
E L CP C ++ PRVL C H+ C++CL+ + E + CPTCR+ET
Sbjct: 6 EDLTCPICCSLFD----DPRVLPCSHNFCKKCLEGILEGSVRNSLWRPAPFKCPTCRKET 61
Query: 194 VLFTDYGLAALAVNTSI 210
+ G+ +L VN S+
Sbjct: 62 ---SATGINSLQVNYSL 75
>gi|47132521 ret finger protein 2 isoform 1 [Homo sapiens]
Length = 407
Score = 46.6 bits (109), Expect = 2e-05
Identities = 27/77 (35%), Positives = 40/77 (51%), Gaps = 12/77 (15%)
Query: 139 EPLECPTCGHSYNVTQRRPRVLSCLHSVCEQCLQILYESCPKYKF-----ISCPTCRRET 193
E L CP C ++ PRVL C H+ C++CL+ + E + CPTCR+ET
Sbjct: 6 EDLTCPICCSLFD----DPRVLPCSHNFCKKCLEGILEGSVRNSLWRPAPFKCPTCRKET 61
Query: 194 VLFTDYGLAALAVNTSI 210
+ G+ +L VN S+
Sbjct: 62 ---SATGINSLQVNYSL 75
>gi|169214080 PREDICTED: hypothetical protein LOC646862 [Homo
sapiens]
Length = 329
Score = 45.8 bits (107), Expect = 4e-05
Identities = 37/133 (27%), Positives = 56/133 (42%), Gaps = 17/133 (12%)
Query: 88 APHTPPLPRRPRKGSSELGFPRVAPEDEVIVNQYVIRPGPSASAASSAAAGEPLECPTCG 147
+P + PR P +G + E+E GP AS P+EC C
Sbjct: 22 SPGSLSAPRSPSRGEDQ-------EEEEEEEGDGSPGSGPILPPAS------PVECLICV 68
Query: 148 HSYNVTQRRPRVLSCLHSVCEQCL-QILYESCPKYKFISCPTCRRETVLFTDYGLAALAV 206
S++ + P+ L C H C +CL ++ + ++CP CR T L GL AL
Sbjct: 69 SSFDGVFKLPKRLDCGHVFCLECLARLSLATAGGGNAVACPVCRAPTRLAPRRGLPALPT 128
Query: 207 NTSIL---SRLPP 216
+ +L +R PP
Sbjct: 129 QSGLLPRDARAPP 141
>gi|169214500 PREDICTED: hypothetical protein LOC646862 [Homo
sapiens]
Length = 329
Score = 45.8 bits (107), Expect = 4e-05
Identities = 37/133 (27%), Positives = 56/133 (42%), Gaps = 17/133 (12%)
Query: 88 APHTPPLPRRPRKGSSELGFPRVAPEDEVIVNQYVIRPGPSASAASSAAAGEPLECPTCG 147
+P + PR P +G + E+E GP AS P+EC C
Sbjct: 22 SPGSLSAPRSPSRGEDQ-------EEEEEEEGDGSPGSGPILPPAS------PVECLICV 68
Query: 148 HSYNVTQRRPRVLSCLHSVCEQCL-QILYESCPKYKFISCPTCRRETVLFTDYGLAALAV 206
S++ + P+ L C H C +CL ++ + ++CP CR T L GL AL
Sbjct: 69 SSFDGVFKLPKRLDCGHVFCLECLARLSLATAGGGNAVACPVCRAPTRLAPRRGLPALPT 128
Query: 207 NTSIL---SRLPP 216
+ +L +R PP
Sbjct: 129 QSGLLPRDARAPP 141
>gi|169213453 PREDICTED: hypothetical protein LOC646862 [Homo
sapiens]
Length = 329
Score = 45.8 bits (107), Expect = 4e-05
Identities = 37/133 (27%), Positives = 56/133 (42%), Gaps = 17/133 (12%)
Query: 88 APHTPPLPRRPRKGSSELGFPRVAPEDEVIVNQYVIRPGPSASAASSAAAGEPLECPTCG 147
+P + PR P +G + E+E GP AS P+EC C
Sbjct: 22 SPGSLSAPRSPSRGEDQ-------EEEEEEEGDGSPGSGPILPPAS------PVECLICV 68
Query: 148 HSYNVTQRRPRVLSCLHSVCEQCL-QILYESCPKYKFISCPTCRRETVLFTDYGLAALAV 206
S++ + P+ L C H C +CL ++ + ++CP CR T L GL AL
Sbjct: 69 SSFDGVFKLPKRLDCGHVFCLECLARLSLATAGGGNAVACPVCRAPTRLAPRRGLPALPT 128
Query: 207 NTSIL---SRLPP 216
+ +L +R PP
Sbjct: 129 QSGLLPRDARAPP 141
>gi|27734873 ring finger protein 152 [Homo sapiens]
Length = 203
Score = 45.8 bits (107), Expect = 4e-05
Identities = 25/72 (34%), Positives = 39/72 (54%), Gaps = 4/72 (5%)
Query: 141 LECPTCGHSYNVTQRRPRVLSCLHSVCEQCLQILYESCPKYKFISCPTCRRETVLFTDYG 200
LEC C + Y+ +RRP++L C H+ C CLQ + S K + CP CR T L +
Sbjct: 10 LECQICFNYYS-PRRRPKLLDCKHTCCSVCLQQMRTS---QKDVRCPWCRGVTKLPPGFS 65
Query: 201 LAALAVNTSILS 212
++ L + +L+
Sbjct: 66 VSQLPDDPEVLA 77
>gi|222446607 SH3 domain containing ring finger 2 [Homo sapiens]
Length = 729
Score = 45.8 bits (107), Expect = 4e-05
Identities = 31/89 (34%), Positives = 49/89 (55%), Gaps = 11/89 (12%)
Query: 141 LECPTCGHSYNVTQRRPRVLSCLHSVCEQCLQILYESCPKYKFISCPTCRRETVLFTDYG 200
LECP C +VT + VL C H+ C+ CLQ ++++ +K + CP CR T +F++
Sbjct: 10 LECPVCFEKLDVTAK---VLPCQHTFCKPCLQRVFKA---HKELRCPECR--TPVFSN-- 59
Query: 201 LAALAVNTSILSRLPPEALTAPSGGQWGA 229
+ AL N +L RL + S G+ G+
Sbjct: 60 IEALPANL-LLVRLLDGVRSGQSSGRGGS 87
>gi|40255283 NHL repeat containing 1 [Homo sapiens]
Length = 395
Score = 43.5 bits (101), Expect = 2e-04
Identities = 26/67 (38%), Positives = 33/67 (49%), Gaps = 3/67 (4%)
Query: 126 GPSASAASSAAAGEPLECPTCGHSY-NVTQRRPRVLSCLHSVCEQCLQILYESCPKYKFI 184
GP+ A LEC C + + QRRPR LSC H VC C+ L + P+ +
Sbjct: 9 GPALHELMREAEISLLECKVCFEKFGHRQQRRPRNLSCGHVVCLACVAAL--AHPRTLAL 66
Query: 185 SCPTCRR 191
CP CRR
Sbjct: 67 ECPFCRR 73
>gi|47419911 transcriptional intermediary factor 1 alpha isoform a
[Homo sapiens]
Length = 1050
Score = 42.7 bits (99), Expect = 3e-04
Identities = 25/67 (37%), Positives = 33/67 (49%), Gaps = 6/67 (8%)
Query: 106 GFPRVAPEDEVIVNQYVIRPGPSASAASSAAAGEPLE-CPTCGHSYNVTQRRPRVLSCLH 164
G P AP E N+ R GP + AA L+ C C N+ R P++L CLH
Sbjct: 21 GGPSAAPSGE---NEAESRQGPDSERGGEAARLNLLDTCAVCHQ--NIQSRAPKLLPCLH 75
Query: 165 SVCEQCL 171
S C++CL
Sbjct: 76 SFCQRCL 82
>gi|47419909 transcriptional intermediary factor 1 alpha isoform b
[Homo sapiens]
Length = 1016
Score = 42.7 bits (99), Expect = 3e-04
Identities = 25/67 (37%), Positives = 33/67 (49%), Gaps = 6/67 (8%)
Query: 106 GFPRVAPEDEVIVNQYVIRPGPSASAASSAAAGEPLE-CPTCGHSYNVTQRRPRVLSCLH 164
G P AP E N+ R GP + AA L+ C C N+ R P++L CLH
Sbjct: 21 GGPSAAPSGE---NEAESRQGPDSERGGEAARLNLLDTCAVCHQ--NIQSRAPKLLPCLH 75
Query: 165 SVCEQCL 171
S C++CL
Sbjct: 76 SFCQRCL 82
>gi|73695473 roquin [Homo sapiens]
Length = 1133
Score = 41.6 bits (96), Expect = 7e-04
Identities = 25/71 (35%), Positives = 38/71 (53%), Gaps = 11/71 (15%)
Query: 141 LECPTCGHSYNVTQRRPRVLSCLHSVCEQCLQILYESCPKYKFISCPTCRRETVLFTDYG 200
L CP C +++ T R+P L C H+VC+ CL L+ +CP +T + TD
Sbjct: 12 LSCPICTQTFDETIRKPISLGCGHTVCKMCLNKLHRK-------ACPF--DQTTINTDIE 62
Query: 201 LAALAVNTSIL 211
L L VN+++L
Sbjct: 63 L--LPVNSALL 71
>gi|9506663 ring finger protein 186 [Homo sapiens]
Length = 227
Score = 41.2 bits (95), Expect = 0.001
Identities = 20/55 (36%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Query: 141 LECPTCGHSYNVTQRRPRVLSCLHSVCEQCLQILYESCPKYKFISCPTCRRETVL 195
LEC C Y+ R P++L+C H+ C CL++L I+CP CR+ T +
Sbjct: 38 LECLVCREPYSCP-RLPKLLACQHAFCAICLKLLLCVQDNTWSITCPLCRKVTAV 91
>gi|124487387 ring finger protein 207 [Homo sapiens]
Length = 634
Score = 40.8 bits (94), Expect = 0.001
Identities = 27/76 (35%), Positives = 35/76 (46%), Gaps = 11/76 (14%)
Query: 126 GPSASAASSAAAGEPLECPTCGHSYNVTQRRPRVLSCLHSVCEQCLQILYESCPKYKFIS 185
GPS+ A S PL CP C +V RP +L C H C CL+ ++
Sbjct: 11 GPSSLDAPSI---HPLVCPLC----HVQYERPCLLDCFHDFCAGCLR----GRATDGRLT 59
Query: 186 CPTCRRETVLFTDYGL 201
CP C+ +TVL GL
Sbjct: 60 CPLCQHQTVLKGPSGL 75
>gi|150010572 SH3 domain containing ring finger 3 [Homo sapiens]
Length = 882
Score = 40.8 bits (94), Expect = 0.001
Identities = 35/118 (29%), Positives = 53/118 (44%), Gaps = 27/118 (22%)
Query: 124 RPGPSA---SAASSAAAGEP---------LECPTCGHSYNVTQRRPRVLSCLHSVCEQCL 171
RPG +AA++A AGE LEC C + T + VL C H+ C +CL
Sbjct: 26 RPGERRRRRAAATAAGAGEDMDESSLLDLLECSVCLERLDTTAK---VLPCQHTFCRRCL 82
Query: 172 QILYESCPKYKFISCPTCRRETVLFTDYGLAALAVNTSILS-----RLPPEALTAPSG 224
+ + C +++ + CP CR + G+ L N ++ R P A T+P G
Sbjct: 83 ESIV--CSRHE-LRCPECR----ILVGCGVDELPANILLVRLLDGIRQRPRAGTSPGG 133
>gi|15208643 ADP-ribosylation factor domain protein 1 isoform gamma
[Homo sapiens]
Length = 546
Score = 40.4 bits (93), Expect = 0.002
Identities = 43/155 (27%), Positives = 63/155 (40%), Gaps = 18/155 (11%)
Query: 116 VIVNQYVIRPGPSASAASSAAAGEPLECPTCGHSYNVT-QRRPRVLSCLHSVCEQCLQIL 174
++VN+ + A + LEC C +++ + PR+L C H+VC CL L
Sbjct: 4 LVVNKLGAGVDSGRQGSRGTAVVKVLECGVCEDVFSLQGDKVPRLLLCGHTVCHDCLTRL 63
Query: 175 YESCPKY-KFISCPTCRRETVLFTDYGLAALAVNTSILSRLPPEALTAPSGGQWGAEPEG 233
P + + I CP R+ T L D G+ L N ++L L E L GQ+GA E
Sbjct: 64 ----PLHGRAIRCPFDRQVTDL-GDSGVWGLKKNFALLELL--ERLQNGPIGQYGAAEES 116
Query: 234 ---------SCYQTFRQYCGAACTCHVRNPLSACS 259
C + CT + S CS
Sbjct: 117 IGISGESIIRCDEDEAHLASVYCTVCATHLCSECS 151
>gi|15208641 ADP-ribosylation factor domain protein 1 isoform beta
[Homo sapiens]
Length = 569
Score = 40.4 bits (93), Expect = 0.002
Identities = 43/155 (27%), Positives = 63/155 (40%), Gaps = 18/155 (11%)
Query: 116 VIVNQYVIRPGPSASAASSAAAGEPLECPTCGHSYNVT-QRRPRVLSCLHSVCEQCLQIL 174
++VN+ + A + LEC C +++ + PR+L C H+VC CL L
Sbjct: 4 LVVNKLGAGVDSGRQGSRGTAVVKVLECGVCEDVFSLQGDKVPRLLLCGHTVCHDCLTRL 63
Query: 175 YESCPKY-KFISCPTCRRETVLFTDYGLAALAVNTSILSRLPPEALTAPSGGQWGAEPEG 233
P + + I CP R+ T L D G+ L N ++L L E L GQ+GA E
Sbjct: 64 ----PLHGRAIRCPFDRQVTDL-GDSGVWGLKKNFALLELL--ERLQNGPIGQYGAAEES 116
Query: 234 ---------SCYQTFRQYCGAACTCHVRNPLSACS 259
C + CT + S CS
Sbjct: 117 IGISGESIIRCDEDEAHLASVYCTVCATHLCSECS 151
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.319 0.136 0.447
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,948,175
Number of Sequences: 37866
Number of extensions: 811321
Number of successful extensions: 6108
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 84
Number of HSP's successfully gapped in prelim test: 321
Number of HSP's that attempted gapping in prelim test: 5468
Number of HSP's gapped (non-prelim): 909
length of query: 261
length of database: 18,247,518
effective HSP length: 100
effective length of query: 161
effective length of database: 14,460,918
effective search space: 2328207798
effective search space used: 2328207798
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.