Guide to the Human Genome
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Search of human proteins with 239754389

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|239754389 PREDICTED: hypothetical protein [Homo sapiens]
         (161 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|239754389 PREDICTED: hypothetical protein [Homo sapiens]           340   4e-94
gi|239748973 PREDICTED: hypothetical protein [Homo sapiens]           340   4e-94
gi|239742995 PREDICTED: hypothetical protein XP_002342714 [Homo ...   340   4e-94
gi|32698950 hypothetical protein LOC283870 [Homo sapiens]              31   0.53 
gi|117414137 retinitis pigmentosa 1-like 1 [Homo sapiens]              30   1.2  
gi|151301053 RNA binding motif protein 33 [Homo sapiens]               29   1.5  
gi|38505290 voltage-dependent calcium channel alpha 1G subunit i...    29   1.5  
gi|38505288 voltage-dependent calcium channel alpha 1G subunit i...    29   1.5  
gi|38505286 voltage-dependent calcium channel alpha 1G subunit i...    29   1.5  
gi|38505282 voltage-dependent calcium channel alpha 1G subunit i...    29   1.5  
gi|38505278 voltage-dependent calcium channel alpha 1G subunit i...    29   1.5  
gi|38505272 voltage-dependent calcium channel alpha 1G subunit i...    29   1.5  
gi|38505268 voltage-dependent calcium channel alpha 1G subunit i...    29   1.5  
gi|190341097 rhomboid family 1 [Homo sapiens]                          29   2.0  
gi|205361109 multiple C2 domains, transmembrane 1 isoform L [Hom...    28   2.6  
gi|55749742 HEAT repeat containing 5B [Homo sapiens]                   28   3.4  
gi|239757110 PREDICTED: hypothetical protein [Homo sapiens]            28   4.5  
gi|239754702 PREDICTED: hypothetical protein [Homo sapiens]            28   4.5  
gi|239749230 PREDICTED: hypothetical protein XP_002346972 [Homo ...    28   4.5  
gi|239743321 PREDICTED: hypothetical protein XP_002342822 [Homo ...    28   4.5  
gi|239509001 PREDICTED: hypothetical protein [Homo sapiens]            28   4.5  
gi|40288197 GATA binding protein 6 [Homo sapiens]                      27   5.8  
gi|38348368 hypothetical protein LOC374872 [Homo sapiens]              27   5.8  
gi|14149987 WD repeat domain 24 [Homo sapiens]                         27   5.8  
gi|20070163 voltage-dependent calcium channel alpha 1G subunit i...    27   7.6  
gi|239756153 PREDICTED: hypothetical protein [Homo sapiens]            27   7.6  
gi|239750693 PREDICTED: hypothetical protein [Homo sapiens]            27   7.6  
gi|239745001 PREDICTED: hypothetical protein XP_002343291 [Homo ...    27   7.6  
gi|38505292 voltage-dependent calcium channel alpha 1G subunit i...    27   7.6  
gi|38505270 voltage-dependent calcium channel alpha 1G subunit i...    27   7.6  

>gi|239754389 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 161

 Score =  340 bits (871), Expect = 4e-94
 Identities = 161/161 (100%), Positives = 161/161 (100%)

Query: 1   MEEAKQEGDLEGRRNTMCARNHRTLHPPERKVQLPDEPAVGPDQARLQLLSHPVDAPHIA 60
           MEEAKQEGDLEGRRNTMCARNHRTLHPPERKVQLPDEPAVGPDQARLQLLSHPVDAPHIA
Sbjct: 1   MEEAKQEGDLEGRRNTMCARNHRTLHPPERKVQLPDEPAVGPDQARLQLLSHPVDAPHIA 60

Query: 61  GPHGSRQPILNVVGSFNHLLFTIKGDDTRHWTKYLFRHAAGFILNVCYHRGKHKVACLVP 120
           GPHGSRQPILNVVGSFNHLLFTIKGDDTRHWTKYLFRHAAGFILNVCYHRGKHKVACLVP
Sbjct: 61  GPHGSRQPILNVVGSFNHLLFTIKGDDTRHWTKYLFRHAAGFILNVCYHRGKHKVACLVP 120

Query: 121 GREAQLIHSLTAPNLGTFSKSSLDVTSDLLDQRECRLSTFW 161
           GREAQLIHSLTAPNLGTFSKSSLDVTSDLLDQRECRLSTFW
Sbjct: 121 GREAQLIHSLTAPNLGTFSKSSLDVTSDLLDQRECRLSTFW 161


>gi|239748973 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 161

 Score =  340 bits (871), Expect = 4e-94
 Identities = 161/161 (100%), Positives = 161/161 (100%)

Query: 1   MEEAKQEGDLEGRRNTMCARNHRTLHPPERKVQLPDEPAVGPDQARLQLLSHPVDAPHIA 60
           MEEAKQEGDLEGRRNTMCARNHRTLHPPERKVQLPDEPAVGPDQARLQLLSHPVDAPHIA
Sbjct: 1   MEEAKQEGDLEGRRNTMCARNHRTLHPPERKVQLPDEPAVGPDQARLQLLSHPVDAPHIA 60

Query: 61  GPHGSRQPILNVVGSFNHLLFTIKGDDTRHWTKYLFRHAAGFILNVCYHRGKHKVACLVP 120
           GPHGSRQPILNVVGSFNHLLFTIKGDDTRHWTKYLFRHAAGFILNVCYHRGKHKVACLVP
Sbjct: 61  GPHGSRQPILNVVGSFNHLLFTIKGDDTRHWTKYLFRHAAGFILNVCYHRGKHKVACLVP 120

Query: 121 GREAQLIHSLTAPNLGTFSKSSLDVTSDLLDQRECRLSTFW 161
           GREAQLIHSLTAPNLGTFSKSSLDVTSDLLDQRECRLSTFW
Sbjct: 121 GREAQLIHSLTAPNLGTFSKSSLDVTSDLLDQRECRLSTFW 161


>gi|239742995 PREDICTED: hypothetical protein XP_002342714 [Homo
           sapiens]
          Length = 161

 Score =  340 bits (871), Expect = 4e-94
 Identities = 161/161 (100%), Positives = 161/161 (100%)

Query: 1   MEEAKQEGDLEGRRNTMCARNHRTLHPPERKVQLPDEPAVGPDQARLQLLSHPVDAPHIA 60
           MEEAKQEGDLEGRRNTMCARNHRTLHPPERKVQLPDEPAVGPDQARLQLLSHPVDAPHIA
Sbjct: 1   MEEAKQEGDLEGRRNTMCARNHRTLHPPERKVQLPDEPAVGPDQARLQLLSHPVDAPHIA 60

Query: 61  GPHGSRQPILNVVGSFNHLLFTIKGDDTRHWTKYLFRHAAGFILNVCYHRGKHKVACLVP 120
           GPHGSRQPILNVVGSFNHLLFTIKGDDTRHWTKYLFRHAAGFILNVCYHRGKHKVACLVP
Sbjct: 61  GPHGSRQPILNVVGSFNHLLFTIKGDDTRHWTKYLFRHAAGFILNVCYHRGKHKVACLVP 120

Query: 121 GREAQLIHSLTAPNLGTFSKSSLDVTSDLLDQRECRLSTFW 161
           GREAQLIHSLTAPNLGTFSKSSLDVTSDLLDQRECRLSTFW
Sbjct: 121 GREAQLIHSLTAPNLGTFSKSSLDVTSDLLDQRECRLSTFW 161


>gi|32698950 hypothetical protein LOC283870 [Homo sapiens]
          Length = 228

 Score = 30.8 bits (68), Expect = 0.53
 Identities = 26/80 (32%), Positives = 36/80 (45%), Gaps = 7/80 (8%)

Query: 39  AVGPDQARLQLLSHPVDAPHIAGPHGSRQPILNVVGSFNHLLFTIKGDDTRHWTKYLFRH 98
           A GP + RLQ L   + +PH+  P+   Q IL  V   N    T+    + H    LF  
Sbjct: 55  AQGPPKPRLQTLRMTLPSPHMPRPN---QTILVDVAR-NAATITVTPPQSNHSWAVLFDG 110

Query: 99  AAGFILNVCYHRGKHKVACL 118
            +G I   CY   +H+V  L
Sbjct: 111 QSGCI---CYRPEEHQVCFL 127


>gi|117414137 retinitis pigmentosa 1-like 1 [Homo sapiens]
          Length = 2400

 Score = 29.6 bits (65), Expect = 1.2
 Identities = 22/74 (29%), Positives = 34/74 (45%), Gaps = 13/74 (17%)

Query: 35  PDEPAVGPDQARLQLLSHPVDAPH-----IAGPHGSRQPILNVVGSFN---HLLFTIKGD 86
           P  P VGP   R     HP D P      +AG    ++  +N  GS +    + F + G+
Sbjct: 280 PSNPPVGPAPGR-----HPQDTPAQSGPLVAGDDMKKKVRMNEDGSLSVEMKVRFHLVGE 334

Query: 87  DTRHWTKYLFRHAA 100
           DT  W++ + R +A
Sbjct: 335 DTLLWSRRMGRASA 348


>gi|151301053 RNA binding motif protein 33 [Homo sapiens]
          Length = 1170

 Score = 29.3 bits (64), Expect = 1.5
 Identities = 17/41 (41%), Positives = 21/41 (51%), Gaps = 3/41 (7%)

Query: 26   HPPERKVQLPDEPAVGPDQARLQLLSHP--VDAPHI-AGPH 63
            HP  +  +LP  P VGP  AR   L+       PH+ AGPH
Sbjct: 1002 HPEGQPQRLPQPPEVGPQPARKVTLTRGGLQQPPHLPAGPH 1042


>gi|38505290 voltage-dependent calcium channel alpha 1G subunit
            isoform 13 [Homo sapiens]
          Length = 2243

 Score = 29.3 bits (64), Expect = 1.5
 Identities = 22/69 (31%), Positives = 30/69 (43%), Gaps = 3/69 (4%)

Query: 2    EEAKQEGDLEGRRNTMCARNHRTLHPP--ERKVQLPDEPAVGPDQARLQLLSHPVDAPHI 59
            EEA+ E +LE    T+  + H  L  P     V+ PD P   P    L   +H   A H 
Sbjct: 1822 EEAELEAELELEMKTLSPQPHSPLGSPFLWPGVEGPDSPD-SPKPGALHPAAHARSASHF 1880

Query: 60   AGPHGSRQP 68
            +  H + QP
Sbjct: 1881 SLEHPTMQP 1889


>gi|38505288 voltage-dependent calcium channel alpha 1G subunit
            isoform 12 [Homo sapiens]
          Length = 2250

 Score = 29.3 bits (64), Expect = 1.5
 Identities = 22/69 (31%), Positives = 30/69 (43%), Gaps = 3/69 (4%)

Query: 2    EEAKQEGDLEGRRNTMCARNHRTLHPP--ERKVQLPDEPAVGPDQARLQLLSHPVDAPHI 59
            EEA+ E +LE    T+  + H  L  P     V+ PD P   P    L   +H   A H 
Sbjct: 1829 EEAELEAELELEMKTLSPQPHSPLGSPFLWPGVEGPDSPD-SPKPGALHPAAHARSASHF 1887

Query: 60   AGPHGSRQP 68
            +  H + QP
Sbjct: 1888 SLEHPTMQP 1896


>gi|38505286 voltage-dependent calcium channel alpha 1G subunit
            isoform 10 [Homo sapiens]
          Length = 2266

 Score = 29.3 bits (64), Expect = 1.5
 Identities = 22/69 (31%), Positives = 30/69 (43%), Gaps = 3/69 (4%)

Query: 2    EEAKQEGDLEGRRNTMCARNHRTLHPP--ERKVQLPDEPAVGPDQARLQLLSHPVDAPHI 59
            EEA+ E +LE    T+  + H  L  P     V+ PD P   P    L   +H   A H 
Sbjct: 1845 EEAELEAELELEMKTLSPQPHSPLGSPFLWPGVEGPDSPD-SPKPGALHPAAHARSASHF 1903

Query: 60   AGPHGSRQP 68
            +  H + QP
Sbjct: 1904 SLEHPTMQP 1912


>gi|38505282 voltage-dependent calcium channel alpha 1G subunit
            isoform 8 [Homo sapiens]
          Length = 2284

 Score = 29.3 bits (64), Expect = 1.5
 Identities = 22/69 (31%), Positives = 30/69 (43%), Gaps = 3/69 (4%)

Query: 2    EEAKQEGDLEGRRNTMCARNHRTLHPP--ERKVQLPDEPAVGPDQARLQLLSHPVDAPHI 59
            EEA+ E +LE    T+  + H  L  P     V+ PD P   P    L   +H   A H 
Sbjct: 1863 EEAELEAELELEMKTLSPQPHSPLGSPFLWPGVEGPDSPD-SPKPGALHPAAHARSASHF 1921

Query: 60   AGPHGSRQP 68
            +  H + QP
Sbjct: 1922 SLEHPTMQP 1930


>gi|38505278 voltage-dependent calcium channel alpha 1G subunit
            isoform 11 [Homo sapiens]
          Length = 2261

 Score = 29.3 bits (64), Expect = 1.5
 Identities = 22/69 (31%), Positives = 30/69 (43%), Gaps = 3/69 (4%)

Query: 2    EEAKQEGDLEGRRNTMCARNHRTLHPP--ERKVQLPDEPAVGPDQARLQLLSHPVDAPHI 59
            EEA+ E +LE    T+  + H  L  P     V+ PD P   P    L   +H   A H 
Sbjct: 1840 EEAELEAELELEMKTLSPQPHSPLGSPFLWPGVEGPDSPD-SPKPGALHPAAHARSASHF 1898

Query: 60   AGPHGSRQP 68
            +  H + QP
Sbjct: 1899 SLEHPTMQP 1907


>gi|38505272 voltage-dependent calcium channel alpha 1G subunit
            isoform 9 [Homo sapiens]
          Length = 2273

 Score = 29.3 bits (64), Expect = 1.5
 Identities = 22/69 (31%), Positives = 30/69 (43%), Gaps = 3/69 (4%)

Query: 2    EEAKQEGDLEGRRNTMCARNHRTLHPP--ERKVQLPDEPAVGPDQARLQLLSHPVDAPHI 59
            EEA+ E +LE    T+  + H  L  P     V+ PD P   P    L   +H   A H 
Sbjct: 1852 EEAELEAELELEMKTLSPQPHSPLGSPFLWPGVEGPDSPD-SPKPGALHPAAHARSASHF 1910

Query: 60   AGPHGSRQP 68
            +  H + QP
Sbjct: 1911 SLEHPTMQP 1919


>gi|38505268 voltage-dependent calcium channel alpha 1G subunit
            isoform 14 [Homo sapiens]
          Length = 2171

 Score = 29.3 bits (64), Expect = 1.5
 Identities = 22/69 (31%), Positives = 30/69 (43%), Gaps = 3/69 (4%)

Query: 2    EEAKQEGDLEGRRNTMCARNHRTLHPP--ERKVQLPDEPAVGPDQARLQLLSHPVDAPHI 59
            EEA+ E +LE    T+  + H  L  P     V+ PD P   P    L   +H   A H 
Sbjct: 1829 EEAELEAELELEMKTLSPQPHSPLGSPFLWPGVEGPDSPD-SPKPGALHPAAHARSASHF 1887

Query: 60   AGPHGSRQP 68
            +  H + QP
Sbjct: 1888 SLEHPTMQP 1896


>gi|190341097 rhomboid family 1 [Homo sapiens]
          Length = 855

 Score = 28.9 bits (63), Expect = 2.0
 Identities = 27/110 (24%), Positives = 46/110 (41%), Gaps = 22/110 (20%)

Query: 11  EGRRNTMCARNHRTLHPPERKVQLP-------DEPAVGPD---QARLQLLSHPVDAPHIA 60
           E RR++  +   +   PP  K+ +P       +EP+       QA L+ +S P +  HI+
Sbjct: 3   EARRDSTSSLQRKK--PPWLKLDIPSAVPLTAEEPSFLQPLRRQAFLRSVSMPAETAHIS 60

Query: 61  GPHGS-RQPILNVVGSFNHLL---------FTIKGDDTRHWTKYLFRHAA 100
            PH   R+P+L    S    +          +   D T+ W +   RH +
Sbjct: 61  SPHHELRRPVLQRQTSITQTIRRGTADWFGVSKDSDSTQKWQRKSIRHCS 110


>gi|205361109 multiple C2 domains, transmembrane 1 isoform L [Homo
           sapiens]
          Length = 999

 Score = 28.5 bits (62), Expect = 2.6
 Identities = 16/43 (37%), Positives = 20/43 (46%), Gaps = 9/43 (20%)

Query: 35  PDEPAVGPDQARLQLLSHPVDAPHIAGPHGSRQPILNVVGSFN 77
           P EPA  P ++R         AP     HGS Q I+N  G+ N
Sbjct: 217 PAEPARSPAESR---------APETGEEHGSSQKIINTAGTSN 250


>gi|55749742 HEAT repeat containing 5B [Homo sapiens]
          Length = 2071

 Score = 28.1 bits (61), Expect = 3.4
 Identities = 19/72 (26%), Positives = 29/72 (40%), Gaps = 10/72 (13%)

Query: 1   MEEAKQEGD-------LEGRRNTMCARNHRTLHPPERKVQLPDEPAVGPDQARLQLLSHP 53
           +E  K  GD       LEGR   +CA      H PE   +      + P +  + ++SH 
Sbjct: 592 LEAEKARGDSFTWQVTLEGRAGALCAMRSFVAHCPELLTEDVIRKLMTPIECAMTMMSH- 650

Query: 54  VDAPHIAGPHGS 65
              P +   HG+
Sbjct: 651 --IPSVMKAHGA 660


>gi|239757110 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 192

 Score = 27.7 bits (60), Expect = 4.5
 Identities = 14/40 (35%), Positives = 19/40 (47%)

Query: 26  HPPERKVQLPDEPAVGPDQARLQLLSHPVDAPHIAGPHGS 65
           HP E  VQLP  P  G +Q  ++  S P   P +  P  +
Sbjct: 64  HPAELSVQLPANPPPGLNQGCIRAASAPRWVPTLTVPQAT 103


>gi|239754702 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 241

 Score = 27.7 bits (60), Expect = 4.5
 Identities = 19/73 (26%), Positives = 28/73 (38%), Gaps = 12/73 (16%)

Query: 5  KQEGDLEGRRNTMCARNHRTLHPPER---KVQLPDEPAVGPDQARLQLLSHPVDAPHIAG 61
          K +G L G +  +C R  R  H P R       P  PA  P+              H+ G
Sbjct: 2  KCQGLLAGEQRELCGRAARGSHRPGRFNLSPACPQSPATAPNAP---------PGTHLGG 52

Query: 62 PHGSRQPILNVVG 74
          P   ++  + V+G
Sbjct: 53 PGAGQRSEIQVLG 65


>gi|239749230 PREDICTED: hypothetical protein XP_002346972 [Homo
          sapiens]
          Length = 241

 Score = 27.7 bits (60), Expect = 4.5
 Identities = 19/73 (26%), Positives = 28/73 (38%), Gaps = 12/73 (16%)

Query: 5  KQEGDLEGRRNTMCARNHRTLHPPER---KVQLPDEPAVGPDQARLQLLSHPVDAPHIAG 61
          K +G L G +  +C R  R  H P R       P  PA  P+              H+ G
Sbjct: 2  KCQGLLAGEQRELCGRAARGSHRPGRFNLSPACPQSPATAPNAP---------PGTHLGG 52

Query: 62 PHGSRQPILNVVG 74
          P   ++  + V+G
Sbjct: 53 PGAGQRSEIQVLG 65


>gi|239743321 PREDICTED: hypothetical protein XP_002342822 [Homo
          sapiens]
          Length = 241

 Score = 27.7 bits (60), Expect = 4.5
 Identities = 19/73 (26%), Positives = 28/73 (38%), Gaps = 12/73 (16%)

Query: 5  KQEGDLEGRRNTMCARNHRTLHPPER---KVQLPDEPAVGPDQARLQLLSHPVDAPHIAG 61
          K +G L G +  +C R  R  H P R       P  PA  P+              H+ G
Sbjct: 2  KCQGLLAGEQRELCGRAARGSHRPGRFNLSPACPQSPATAPNAP---------PGTHLGG 52

Query: 62 PHGSRQPILNVVG 74
          P   ++  + V+G
Sbjct: 53 PGAGQRSEIQVLG 65


>gi|239509001 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 241

 Score = 27.7 bits (60), Expect = 4.5
 Identities = 19/73 (26%), Positives = 28/73 (38%), Gaps = 12/73 (16%)

Query: 5  KQEGDLEGRRNTMCARNHRTLHPPER---KVQLPDEPAVGPDQARLQLLSHPVDAPHIAG 61
          K +G L G +  +C R  R  H P R       P  PA  P+              H+ G
Sbjct: 2  KCQGLLAGEQRELCGRAARGSHRPGRFNLSPACPQSPATAPNAP---------PGTHLGG 52

Query: 62 PHGSRQPILNVVG 74
          P   ++  + V+G
Sbjct: 53 PGAGQRSEIQVLG 65


>gi|40288197 GATA binding protein 6 [Homo sapiens]
          Length = 595

 Score = 27.3 bits (59), Expect = 5.8
 Identities = 18/42 (42%), Positives = 20/42 (47%), Gaps = 9/42 (21%)

Query: 33  QLPDEPAVGPDQARLQL---LSHPVDAPH------IAGPHGS 65
           QL  E A GP    L L    SHP  APH      +AGP G+
Sbjct: 64  QLDTEAAAGPPARSLLLSSYASHPFGAPHGPSAPGVAGPGGN 105


>gi|38348368 hypothetical protein LOC374872 [Homo sapiens]
          Length = 473

 Score = 27.3 bits (59), Expect = 5.8
 Identities = 19/54 (35%), Positives = 21/54 (38%), Gaps = 12/54 (22%)

Query: 16  TMCARNHRTLHPPERKVQLPDEP------------AVGPDQARLQLLSHPVDAP 57
           T      RTLHP   +VQ P  P            AVGP     +L   P DAP
Sbjct: 67  TQSLPTRRTLHPSSIQVQPPRRPFLGSHSVDKSQAAVGPACLPAELTFGPADAP 120


>gi|14149987 WD repeat domain 24 [Homo sapiens]
          Length = 790

 Score = 27.3 bits (59), Expect = 5.8
 Identities = 20/82 (24%), Positives = 32/82 (39%), Gaps = 15/82 (18%)

Query: 8   GDLEGRRNTMCARNHRTLHPPERKVQLPDE----------PAVGPDQARLQLLSHPVDAP 57
           GD+EG  + +   +    HP + +  LP E             GP+      L    D+P
Sbjct: 541 GDVEGEEDELYLLDPEHAHPEDPECVLPQEAFPLRHEIVDTPPGPEH-----LQDKADSP 595

Query: 58  HIAGPHGSRQPILNVVGSFNHL 79
           H++G       +  V  SF+ L
Sbjct: 596 HVSGSEADVASLAPVDSSFSLL 617


>gi|20070163 voltage-dependent calcium channel alpha 1G subunit
            isoform 1 [Homo sapiens]
          Length = 2377

 Score = 26.9 bits (58), Expect = 7.6
 Identities = 39/166 (23%), Positives = 62/166 (37%), Gaps = 38/166 (22%)

Query: 2    EEAKQEGDLEGRRNTMCARNHRTLHPP--ERKVQLPDEPAVGPDQARLQLLSHPVDAPHI 59
            EEA+ E +LE    T+  + H  L  P     V+ PD P   P    L   +H   A H 
Sbjct: 1863 EEAELEAELELEMKTLSPQPHSPLGSPFLWPGVEGPDSPD-SPKPGALHPAAHARSASHF 1921

Query: 60   AGPHGSRQPILNVVGSFNHLLFTIKGDDTRHWTKYLFRHAAGFILNVCYHRGKHKVACLV 119
            +  H + + +      F+ +   I+G  +  W   L    AG                  
Sbjct: 1922 SLEHPTDRQL------FDTISLLIQG--SLEWELKLMDELAG------------------ 1955

Query: 120  PGREAQLIHSLTAPNLG-------TFSKSSLDVTSDLLDQRECRLS 158
            PG +     S  AP+LG            +L +TS+++ +  C L+
Sbjct: 1956 PGGQPSAFPS--APSLGGSDPQIPLAEMEALSLTSEIVSEPSCSLA 1999


>gi|239756153 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 150

 Score = 26.9 bits (58), Expect = 7.6
 Identities = 20/62 (32%), Positives = 30/62 (48%), Gaps = 8/62 (12%)

Query: 11 EGRRNTMCARNHRTLHP----PERKVQLPDEPAVGPDQ-ARLQLLSH---PVDAPHIAGP 62
          +G +  MC++ H+ LHP    P     LP +P    ++ AR+  L H   P +A   A  
Sbjct: 7  QGSQLRMCSQPHQWLHPLYWAPASPGLLPTQPPHSQEEYARVPHLFHLAPPANALRSASC 66

Query: 63 HG 64
          HG
Sbjct: 67 HG 68


>gi|239750693 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 150

 Score = 26.9 bits (58), Expect = 7.6
 Identities = 20/62 (32%), Positives = 30/62 (48%), Gaps = 8/62 (12%)

Query: 11 EGRRNTMCARNHRTLHP----PERKVQLPDEPAVGPDQ-ARLQLLSH---PVDAPHIAGP 62
          +G +  MC++ H+ LHP    P     LP +P    ++ AR+  L H   P +A   A  
Sbjct: 7  QGSQLRMCSQPHQWLHPLYWAPASPGLLPTQPPHSQEEYARVPHLFHLAPPANALRSASC 66

Query: 63 HG 64
          HG
Sbjct: 67 HG 68


>gi|239745001 PREDICTED: hypothetical protein XP_002343291 [Homo
          sapiens]
          Length = 150

 Score = 26.9 bits (58), Expect = 7.6
 Identities = 20/62 (32%), Positives = 30/62 (48%), Gaps = 8/62 (12%)

Query: 11 EGRRNTMCARNHRTLHP----PERKVQLPDEPAVGPDQ-ARLQLLSH---PVDAPHIAGP 62
          +G +  MC++ H+ LHP    P     LP +P    ++ AR+  L H   P +A   A  
Sbjct: 7  QGSQLRMCSQPHQWLHPLYWAPASPGLLPTQPPHSQEEYARVPHLFHLAPPANALRSASC 66

Query: 63 HG 64
          HG
Sbjct: 67 HG 68


>gi|38505292 voltage-dependent calcium channel alpha 1G subunit
            isoform 3 [Homo sapiens]
          Length = 2343

 Score = 26.9 bits (58), Expect = 7.6
 Identities = 39/166 (23%), Positives = 62/166 (37%), Gaps = 38/166 (22%)

Query: 2    EEAKQEGDLEGRRNTMCARNHRTLHPP--ERKVQLPDEPAVGPDQARLQLLSHPVDAPHI 59
            EEA+ E +LE    T+  + H  L  P     V+ PD P   P    L   +H   A H 
Sbjct: 1829 EEAELEAELELEMKTLSPQPHSPLGSPFLWPGVEGPDSPD-SPKPGALHPAAHARSASHF 1887

Query: 60   AGPHGSRQPILNVVGSFNHLLFTIKGDDTRHWTKYLFRHAAGFILNVCYHRGKHKVACLV 119
            +  H + + +      F+ +   I+G  +  W   L    AG                  
Sbjct: 1888 SLEHPTDRQL------FDTISLLIQG--SLEWELKLMDELAG------------------ 1921

Query: 120  PGREAQLIHSLTAPNLG-------TFSKSSLDVTSDLLDQRECRLS 158
            PG +     S  AP+LG            +L +TS+++ +  C L+
Sbjct: 1922 PGGQPSAFPS--APSLGGSDPQIPLAEMEALSLTSEIVSEPSCSLA 1965


>gi|38505270 voltage-dependent calcium channel alpha 1G subunit
            isoform 2 [Homo sapiens]
          Length = 2354

 Score = 26.9 bits (58), Expect = 7.6
 Identities = 39/166 (23%), Positives = 62/166 (37%), Gaps = 38/166 (22%)

Query: 2    EEAKQEGDLEGRRNTMCARNHRTLHPP--ERKVQLPDEPAVGPDQARLQLLSHPVDAPHI 59
            EEA+ E +LE    T+  + H  L  P     V+ PD P   P    L   +H   A H 
Sbjct: 1840 EEAELEAELELEMKTLSPQPHSPLGSPFLWPGVEGPDSPD-SPKPGALHPAAHARSASHF 1898

Query: 60   AGPHGSRQPILNVVGSFNHLLFTIKGDDTRHWTKYLFRHAAGFILNVCYHRGKHKVACLV 119
            +  H + + +      F+ +   I+G  +  W   L    AG                  
Sbjct: 1899 SLEHPTDRQL------FDTISLLIQG--SLEWELKLMDELAG------------------ 1932

Query: 120  PGREAQLIHSLTAPNLG-------TFSKSSLDVTSDLLDQRECRLS 158
            PG +     S  AP+LG            +L +TS+++ +  C L+
Sbjct: 1933 PGGQPSAFPS--APSLGGSDPQIPLAEMEALSLTSEIVSEPSCSLA 1976


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.321    0.137    0.433 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,165,368
Number of Sequences: 37866
Number of extensions: 335787
Number of successful extensions: 815
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 30
Number of HSP's that attempted gapping in prelim test: 810
Number of HSP's gapped (non-prelim): 48
length of query: 161
length of database: 18,247,518
effective HSP length: 94
effective length of query: 67
effective length of database: 14,688,114
effective search space: 984103638
effective search space used: 984103638
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (26.6 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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