Guide to the Human Genome
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Name: LOC100288216 Sequence: fasta or formatted (161aa) NCBI GI: 239742995
Description:

PREDICTED: hypothetical protein XP_002342714

Not currently referenced in the text

Other entries for this name:
alt mRNA {161aa} PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.8         11           2
 C cysteine            2.5          4           1
 D aspartate           5.6          9           2
 E glutamate           5.0          8           2
 F phenylalanine       3.7          6           1
 G glycine             6.8         11           1
 H histidine           6.8         11           1
 I isoleucine          3.1          5           1
 K lysine              4.3          7           1
 L leucine            11.8         19           2
 M methionine          1.2          2           1
 N asparagine          3.7          6           1
 P proline             6.8         11           2
 Q glutamine           4.3          7           1
 R arginine            8.1         13           2
 S serine              5.6          9           2
 T threonine           5.6          9           1
 V valine              5.6          9           2
 W tryptophan          1.2          2           1
 Y tyrosine            1.2          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002342714 
LOC100292630          1.000   PREDICTED: hypothetical protein 
LOC100288216          1.000   PREDICTED: hypothetical protein 
C16orf79              0.019   hypothetical protein LOC283870 
RP1L1                 0.016   retinitis pigmentosa 1-like 1 
RBM33                 0.013   RNA binding motif protein 33 
CACNA1G               0.013   voltage-dependent calcium channel alpha 1G subunit i...
CACNA1G               0.013   voltage-dependent calcium channel alpha 1G subunit i...
CACNA1G               0.013   voltage-dependent calcium channel alpha 1G subunit i...
CACNA1G               0.013   voltage-dependent calcium channel alpha 1G subunit i...
CACNA1G               0.013   voltage-dependent calcium channel alpha 1G subunit i...
CACNA1G               0.013   voltage-dependent calcium channel alpha 1G subunit i...
CACNA1G               0.013   voltage-dependent calcium channel alpha 1G subunit i...
RHBDF1                0.013   rhomboid family 1 
MCTP1                 0.010   multiple C2 domains, transmembrane 1 isoform L [Hom...
HEATR5B               0.010   HEAT repeat containing 5B 
LOC100292688          0.010   PREDICTED: hypothetical protein 
LOC100292426          0.010   PREDICTED: hypothetical protein 
LOC100290287          0.010   PREDICTED: hypothetical protein XP_002346972 
LOC100287468          0.010   PREDICTED: hypothetical protein XP_002342822 
LOC100287468          0.010   PREDICTED: hypothetical protein 
GATA6                 0.006   GATA binding protein 6 
C19orf35              0.006   hypothetical protein LOC374872 
WDR24                 0.006   WD repeat domain 24 
CACNA1G               0.006   voltage-dependent calcium channel alpha 1G subunit i...
LOC100293930          0.006   PREDICTED: hypothetical protein 
LOC100287415          0.006   PREDICTED: hypothetical protein 
LOC100287415          0.006   PREDICTED: hypothetical protein XP_002343291 
CACNA1G               0.006   voltage-dependent calcium channel alpha 1G subunit i...
CACNA1G               0.006   voltage-dependent calcium channel alpha 1G subunit i...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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