Guide to the Human Genome
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Name: LOC100287468 Sequence: fasta or formatted (241aa) NCBI GI: 239743321
Description:

PREDICTED: hypothetical protein XP_002342822

Not currently referenced in the text

Other entries for this name:
alt mRNA {241aa} PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            11.6         28           2
 C cysteine            1.2          3           1
 D aspartate           0.8          2           1
 E glutamate           5.8         14           1
 F phenylalanine       2.5          6           1
 G glycine            12.0         29           3
 H histidine           2.1          5           1
 I isoleucine          2.5          6           1
 K lysine              4.6         11           2
 L leucine             7.1         17           2
 M methionine          2.5          6           1
 N asparagine          3.3          8           1
 P proline             9.1         22           2
 Q glutamine           7.5         18           3
 R arginine           10.4         25           2
 S serine              5.4         13           1
 T threonine           2.9          7           1
 V valine              7.5         18           2
 W tryptophan          0.8          2           1
 Y tyrosine            0.4          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002342822 
LOC100292426          1.000   PREDICTED: hypothetical protein 
LOC100290287          1.000   PREDICTED: hypothetical protein XP_002346972 
LOC100287468          1.000   PREDICTED: hypothetical protein 
LOC100128142          0.017   PREDICTED: hypothetical protein 
LOC100128142          0.017   PREDICTED: similar to RIKEN cDNA E130309D14 
TNKS1BP1              0.017   tankyrase 1-binding protein 1 
LOC729989             0.015   PREDICTED: hypothetical protein 
LOC729989             0.015   PREDICTED: hypothetical protein 
LOC729989             0.015   PREDICTED: hypothetical protein 
PRG2                  0.015   plasticity-related protein 2 
ZNF747                0.015   zinc finger protein 747 
LOC100292727          0.015   PREDICTED: hypothetical protein 
SHROOM3               0.015   shroom family member 3 protein 
TJAP1                 0.015   tight junction associated protein 1 isoform b [Homo...
TJAP1                 0.015   tight junction associated protein 1 isoform b [Homo...
TJAP1                 0.015   tight junction associated protein 1 isoform b [Homo...
TJAP1                 0.015   tight junction associated protein 1 isoform b [Homo...
TJAP1                 0.015   tight junction associated protein 1 isoform a [Homo...
TJAP1                 0.015   tight junction associated protein 1 isoform a [Homo...
PGAM5                 0.015   phosphoglycerate mutase family member 5 
LOC100287524          0.013   PREDICTED: hypothetical protein XP_002342307 
HTRA4                 0.013   HtrA serine peptidase 4 precursor 
SEMA6B                0.013   semaphorin 6B precursor 
LOC100291674          0.013   PREDICTED: hypothetical protein XP_002345936 
LOC100290526          0.013   PREDICTED: hypothetical protein XP_002346804 
LOC100288875          0.013   PREDICTED: hypothetical protein XP_002342673 
RUNDC1                0.013   RUN domain containing 1 
CDC25B                0.011   cell division cycle 25B isoform 2 
VWA5B2                0.011   von Willebrand factor A domain containing 5B2 [Homo...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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