Guide to the Human Genome
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Name: LOC100292237 Sequence: fasta or formatted (174aa) NCBI GI: 239754351
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.2         16           2
 C cysteine            3.4          6           1
 D aspartate           4.0          7           1
 E glutamate           3.4          6           1
 F phenylalanine       1.7          3           1
 G glycine            11.5         20           2
 H histidine           2.9          5           1
 I isoleucine          1.1          2           1
 K lysine              2.3          4           1
 L leucine             9.8         17           2
 M methionine          0.6          1           1
 N asparagine          1.1          2           1
 P proline            12.6         22           2
 Q glutamine           2.9          5           1
 R arginine            8.0         14           3
 S serine              6.3         11           1
 T threonine           7.5         13           1
 V valine              8.0         14           2
 W tryptophan          3.4          6           1
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100289245          1.000   PREDICTED: hypothetical protein 
LOC100289245          1.000   PREDICTED: hypothetical protein XP_002342686 
CEL                   0.040   carboxyl ester lipase precursor 
ANKRD36               0.026   PREDICTED: ankyrin repeat domain 36 
LOC100294010          0.023   PREDICTED: hypothetical protein 
LOC100129463          0.023   PREDICTED: hypothetical protein 
LOC100291514          0.023   PREDICTED: hypothetical protein XP_002347163 
LOC100289311          0.023   PREDICTED: hypothetical protein XP_002343026 
LOC100129036          0.020   PREDICTED: hypothetical protein 
LOC100129036          0.020   PREDICTED: hypothetical protein 
LOC100129036          0.020   PREDICTED: hypothetical protein 
LOC100129036          0.020   PREDICTED: hypothetical protein 
TP53BP2               0.020   tumor protein p53 binding protein, 2 isoform 1 [Hom...
TP53BP2               0.020   tumor protein p53 binding protein, 2 isoform 2 
LOC100293770          0.020   PREDICTED: hypothetical protein 
LOC100292866          0.020   PREDICTED: hypothetical protein 
LOC100288201          0.020   PREDICTED: hypothetical protein 
LOC100290853          0.020   PREDICTED: hypothetical protein XP_002348232 
LOC100288201          0.020   PREDICTED: hypothetical protein XP_002343260 
LOC100288457          0.020   PREDICTED: hypothetical protein XP_002342255 
FOXD4L1               0.017   forkhead box D4-like 1 
NACC1                 0.017   transcriptional repressor NAC1 
LOC100292124          0.017   PREDICTED: hypothetical protein XP_002346387 
LOC100293005          0.017   PREDICTED: hypothetical protein 
LOC100290372          0.017   PREDICTED: hypothetical protein XP_002346788 
LOC100288606          0.017   PREDICTED: hypothetical protein XP_002342652 
GGN                   0.017   gametogenetin 
LOC100291076          0.014   PREDICTED: hypothetical protein XP_002347846 
LOC100287104          0.014   PREDICTED: hypothetical protein XP_002343630 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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