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Search of human proteins with 239754316
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239754316 PREDICTED: hypothetical protein [Homo sapiens]
(135 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239754316 PREDICTED: hypothetical protein [Homo sapiens] 272 5e-74
gi|239748867 PREDICTED: hypothetical protein [Homo sapiens] 272 5e-74
gi|239742896 PREDICTED: hypothetical protein [Homo sapiens] 272 5e-74
gi|239752728 PREDICTED: hypothetical protein [Homo sapiens] 41 3e-04
gi|239741092 PREDICTED: hypothetical protein XP_002342089 [Homo ... 41 3e-04
gi|239753673 PREDICTED: hypothetical protein [Homo sapiens] 39 0.001
gi|239748304 PREDICTED: hypothetical protein XP_002346608 [Homo ... 37 0.006
gi|239742202 PREDICTED: hypothetical protein XP_002342450 [Homo ... 37 0.006
gi|19924099 synapsin I isoform Ia [Homo sapiens] 34 0.041
gi|19924097 synapsin I isoform Ib [Homo sapiens] 34 0.041
gi|38348236 zinc finger protein 497 [Homo sapiens] 33 0.054
gi|148833506 obscurin, cytoskeletal calmodulin and titin-interac... 32 0.12
gi|239758013 PREDICTED: hypothetical protein [Homo sapiens] 32 0.12
gi|239753102 PREDICTED: hypothetical protein [Homo sapiens] 32 0.12
gi|194272142 myosin IXB isoform 2 [Homo sapiens] 32 0.12
gi|33356170 myosin IXB isoform 1 [Homo sapiens] 32 0.12
gi|239749695 PREDICTED: hypothetical protein XP_002347121 [Homo ... 32 0.16
gi|239743961 PREDICTED: hypothetical protein XP_002344246 [Homo ... 32 0.16
gi|239757843 PREDICTED: hypothetical protein XP_002346356 [Homo ... 32 0.20
gi|239752359 PREDICTED: hypothetical protein XP_002348213 [Homo ... 32 0.20
gi|239746873 PREDICTED: hypothetical protein XP_002343872 [Homo ... 32 0.20
gi|47078224 AT rich interactive domain 5A [Homo sapiens] 32 0.20
gi|122937424 one cut homeobox 3 [Homo sapiens] 32 0.20
gi|157909822 pragmin [Homo sapiens] 31 0.27
gi|61966701 dorsal neural-tube nuclear protein [Homo sapiens] 31 0.27
gi|239757400 PREDICTED: hypothetical protein LOC147670 [Homo sap... 31 0.35
gi|169214485 PREDICTED: hypothetical protein LOC147670 [Homo sap... 31 0.35
gi|169213439 PREDICTED: hypothetical protein LOC147670 [Homo sap... 31 0.35
gi|153792074 proline rich 12 [Homo sapiens] 31 0.35
gi|239757942 PREDICTED: hypothetical protein XP_002346387 [Homo ... 30 0.45
>gi|239754316 PREDICTED: hypothetical protein [Homo sapiens]
Length = 135
Score = 272 bits (696), Expect = 5e-74
Identities = 135/135 (100%), Positives = 135/135 (100%)
Query: 1 MGPDVDHLVVFLKEAEEVVAPLVPRGAVAGADVRLPEELGHIRFWDSARHLGKPILQDLG 60
MGPDVDHLVVFLKEAEEVVAPLVPRGAVAGADVRLPEELGHIRFWDSARHLGKPILQDLG
Sbjct: 1 MGPDVDHLVVFLKEAEEVVAPLVPRGAVAGADVRLPEELGHIRFWDSARHLGKPILQDLG 60
Query: 61 QAAQLLPADRQGAQALQDGGRHGSGPHALPRARSPARPSPRSRLGVPATSFPRVAVTAAG 120
QAAQLLPADRQGAQALQDGGRHGSGPHALPRARSPARPSPRSRLGVPATSFPRVAVTAAG
Sbjct: 61 QAAQLLPADRQGAQALQDGGRHGSGPHALPRARSPARPSPRSRLGVPATSFPRVAVTAAG 120
Query: 121 SARGSGREEETAGGG 135
SARGSGREEETAGGG
Sbjct: 121 SARGSGREEETAGGG 135
>gi|239748867 PREDICTED: hypothetical protein [Homo sapiens]
Length = 135
Score = 272 bits (696), Expect = 5e-74
Identities = 135/135 (100%), Positives = 135/135 (100%)
Query: 1 MGPDVDHLVVFLKEAEEVVAPLVPRGAVAGADVRLPEELGHIRFWDSARHLGKPILQDLG 60
MGPDVDHLVVFLKEAEEVVAPLVPRGAVAGADVRLPEELGHIRFWDSARHLGKPILQDLG
Sbjct: 1 MGPDVDHLVVFLKEAEEVVAPLVPRGAVAGADVRLPEELGHIRFWDSARHLGKPILQDLG 60
Query: 61 QAAQLLPADRQGAQALQDGGRHGSGPHALPRARSPARPSPRSRLGVPATSFPRVAVTAAG 120
QAAQLLPADRQGAQALQDGGRHGSGPHALPRARSPARPSPRSRLGVPATSFPRVAVTAAG
Sbjct: 61 QAAQLLPADRQGAQALQDGGRHGSGPHALPRARSPARPSPRSRLGVPATSFPRVAVTAAG 120
Query: 121 SARGSGREEETAGGG 135
SARGSGREEETAGGG
Sbjct: 121 SARGSGREEETAGGG 135
>gi|239742896 PREDICTED: hypothetical protein [Homo sapiens]
Length = 135
Score = 272 bits (696), Expect = 5e-74
Identities = 135/135 (100%), Positives = 135/135 (100%)
Query: 1 MGPDVDHLVVFLKEAEEVVAPLVPRGAVAGADVRLPEELGHIRFWDSARHLGKPILQDLG 60
MGPDVDHLVVFLKEAEEVVAPLVPRGAVAGADVRLPEELGHIRFWDSARHLGKPILQDLG
Sbjct: 1 MGPDVDHLVVFLKEAEEVVAPLVPRGAVAGADVRLPEELGHIRFWDSARHLGKPILQDLG 60
Query: 61 QAAQLLPADRQGAQALQDGGRHGSGPHALPRARSPARPSPRSRLGVPATSFPRVAVTAAG 120
QAAQLLPADRQGAQALQDGGRHGSGPHALPRARSPARPSPRSRLGVPATSFPRVAVTAAG
Sbjct: 61 QAAQLLPADRQGAQALQDGGRHGSGPHALPRARSPARPSPRSRLGVPATSFPRVAVTAAG 120
Query: 121 SARGSGREEETAGGG 135
SARGSGREEETAGGG
Sbjct: 121 SARGSGREEETAGGG 135
>gi|239752728 PREDICTED: hypothetical protein [Homo sapiens]
Length = 246
Score = 40.8 bits (94), Expect = 3e-04
Identities = 20/42 (47%), Positives = 28/42 (66%)
Query: 1 MGPDVDHLVVFLKEAEEVVAPLVPRGAVAGADVRLPEELGHI 42
+GPD+ LVV L++ E+ AP + + VA DVRLPEE H+
Sbjct: 192 VGPDIHGLVVLLEQRAEIEAPGLMQRPVARIDVRLPEERRHL 233
>gi|239741092 PREDICTED: hypothetical protein XP_002342089 [Homo
sapiens]
Length = 246
Score = 40.8 bits (94), Expect = 3e-04
Identities = 20/42 (47%), Positives = 28/42 (66%)
Query: 1 MGPDVDHLVVFLKEAEEVVAPLVPRGAVAGADVRLPEELGHI 42
+GPD+ LVV L++ E+ AP + + VA DVRLPEE H+
Sbjct: 192 VGPDIHGLVVLLEQRAEIEAPGLMQRPVARIDVRLPEERRHL 233
>gi|239753673 PREDICTED: hypothetical protein [Homo sapiens]
Length = 380
Score = 38.9 bits (89), Expect = 0.001
Identities = 29/71 (40%), Positives = 34/71 (47%), Gaps = 13/71 (18%)
Query: 62 AAQLLPADRQGAQALQDGGRHGSGPHALPRARSPARPSPRSRLGVPATSFPRVAVTAAGS 121
A QL+PA RQ AQA G RH S P AR PA + RSR PR+ A+
Sbjct: 154 AVQLVPAPRQAAQAADTGPRHAS-----PGARRPAPGARRSR--------PRLLRPASPP 200
Query: 122 ARGSGREEETA 132
R + R TA
Sbjct: 201 PRPAPRRRSTA 211
>gi|239748304 PREDICTED: hypothetical protein XP_002346608 [Homo
sapiens]
Length = 285
Score = 36.6 bits (83), Expect = 0.006
Identities = 22/42 (52%), Positives = 24/42 (57%), Gaps = 5/42 (11%)
Query: 62 AAQLLPADRQGAQALQDGGRHGSGPHALPRARSPARPSPRSR 103
A QL+PA RQ AQA G RH S P AR PA + RSR
Sbjct: 154 AVQLVPAPRQAAQAADTGPRHAS-----PGARRPAPGARRSR 190
>gi|239742202 PREDICTED: hypothetical protein XP_002342450 [Homo
sapiens]
Length = 272
Score = 36.6 bits (83), Expect = 0.006
Identities = 22/42 (52%), Positives = 24/42 (57%), Gaps = 5/42 (11%)
Query: 62 AAQLLPADRQGAQALQDGGRHGSGPHALPRARSPARPSPRSR 103
A QL+PA RQ AQA G RH S P AR PA + RSR
Sbjct: 141 AVQLVPAPRQAAQAADTGPRHAS-----PGARRPAPGARRSR 177
>gi|19924099 synapsin I isoform Ia [Homo sapiens]
Length = 705
Score = 33.9 bits (76), Expect = 0.041
Identities = 28/70 (40%), Positives = 33/70 (47%), Gaps = 7/70 (10%)
Query: 57 QDLGQAAQLLPADRQGAQALQDGGRHGSGPHALPRARSPARPSPRSRLGVP-ATSFPRVA 115
Q QAA P QG Q+ G GP A P AR PA PSP+ + G P AT V+
Sbjct: 517 QPASQAAP--PTQGQGRQSRPVAG----GPGAPPAARPPASPSPQRQAGPPQATRQTSVS 570
Query: 116 VTAAGSARGS 125
A A G+
Sbjct: 571 GPAPPKASGA 580
>gi|19924097 synapsin I isoform Ib [Homo sapiens]
Length = 669
Score = 33.9 bits (76), Expect = 0.041
Identities = 28/70 (40%), Positives = 33/70 (47%), Gaps = 7/70 (10%)
Query: 57 QDLGQAAQLLPADRQGAQALQDGGRHGSGPHALPRARSPARPSPRSRLGVP-ATSFPRVA 115
Q QAA P QG Q+ G GP A P AR PA PSP+ + G P AT V+
Sbjct: 517 QPASQAAP--PTQGQGRQSRPVAG----GPGAPPAARPPASPSPQRQAGPPQATRQTSVS 570
Query: 116 VTAAGSARGS 125
A A G+
Sbjct: 571 GPAPPKASGA 580
>gi|38348236 zinc finger protein 497 [Homo sapiens]
Length = 498
Score = 33.5 bits (75), Expect = 0.054
Identities = 21/60 (35%), Positives = 30/60 (50%), Gaps = 5/60 (8%)
Query: 45 WDSARHLGKPILQDLGQAAQLLPADRQGAQALQ----DGGRHGSGPHALPRARSPARPSP 100
W+++ + + Q A L AD QG + DGGR G+GP + P R+ RPSP
Sbjct: 41 WENSTEVPREAGDGQRQQATLGAADEQGGPGRELGPADGGRDGAGPRSEPADRA-LRPSP 99
>gi|148833506 obscurin, cytoskeletal calmodulin and titin-interacting
RhoGEF isoform b [Homo sapiens]
Length = 7968
Score = 32.3 bits (72), Expect = 0.12
Identities = 34/118 (28%), Positives = 49/118 (41%), Gaps = 14/118 (11%)
Query: 3 PDVDHLVVFLKEAEEVVAPLVPRGAVAGADVRLPEELGHIRFWDS------ARHLGKPIL 56
P ++H V+ + A E A L+ + +RLP H+ S + +P
Sbjct: 6917 PLMEHRVLEEEAAREEQATLLAKAPSFETALRLPASGTHLAPGHSHSLEHDSPSTPRPSS 6976
Query: 57 QDLGQAAQLLPADRQGAQALQDGGRHGSGPHALPRA------RSPARPSPRSRLGVPA 108
+ G+A Q LP+ G ++D G H G LP P RPSP S G PA
Sbjct: 6977 EACGEA-QRLPSAPSGGAPIRDMG-HPQGSKQLPSTGGHPGTAQPERPSPDSPWGQPA 7032
>gi|239758013 PREDICTED: hypothetical protein [Homo sapiens]
Length = 819
Score = 32.3 bits (72), Expect = 0.12
Identities = 20/68 (29%), Positives = 33/68 (48%), Gaps = 2/68 (2%)
Query: 68 ADRQGAQALQDGGRHGSGPHALPRARSPARPSPRSRLGVPATSFPRVAVTAAGSARGSGR 127
A+ G +A G + S PR + PA +SR+G + + AV A ++ G G
Sbjct: 506 AEAAGEKATAAGAK--SRGRKQPRRQKPAVAGAKSRVGGSKSRQRQKAVAAGATSHGGGG 563
Query: 128 EEETAGGG 135
+++ GGG
Sbjct: 564 NKQSRGGG 571
>gi|239753102 PREDICTED: hypothetical protein [Homo sapiens]
Length = 252
Score = 32.3 bits (72), Expect = 0.12
Identities = 39/129 (30%), Positives = 53/129 (41%), Gaps = 18/129 (13%)
Query: 20 APLVPRGAVAGADVRL--PEELGHIRFWDSARHLGKP--ILQDLGQAAQLLPADRQGAQA 75
APL+P GA A RL P H+ R P + LG AAQ + A
Sbjct: 57 APLLPCGAGGRALDRLDDPSPPPHLPGQSRPRPQTFPRGVFPALGDAAQ----GPEDGLA 112
Query: 76 LQDGGRHGSGPHALPRARSPARPSPRSRLGVPATSFPRVAVTAAGS---------ARGSG 126
+ + P+ P P+ P+P++R P++ PR AG+ ARG G
Sbjct: 113 RRKDTEAPTFPNPAPLLLPPSLPAPKARGSYPSSG-PRSLPNPAGTRRSAVPSWGARGWG 171
Query: 127 REEETAGGG 135
EET GG
Sbjct: 172 GSEETRWGG 180
>gi|194272142 myosin IXB isoform 2 [Homo sapiens]
Length = 2022
Score = 32.3 bits (72), Expect = 0.12
Identities = 22/63 (34%), Positives = 25/63 (39%), Gaps = 1/63 (1%)
Query: 60 GQAAQLLPADRQGAQALQDGGRHGSGPHALPRARSP-ARPSPRSRLGVPATSFPRVAVTA 118
GQAA QG + +DGG S P P RSP SP P + P A
Sbjct: 1075 GQAAGGQQVAEQGPEPAEDGGHLASEPEVQPSDRSPLEHSSPEKEAPSPEKTLPPQKTVA 1134
Query: 119 AGS 121
A S
Sbjct: 1135 AES 1137
>gi|33356170 myosin IXB isoform 1 [Homo sapiens]
Length = 2157
Score = 32.3 bits (72), Expect = 0.12
Identities = 22/63 (34%), Positives = 25/63 (39%), Gaps = 1/63 (1%)
Query: 60 GQAAQLLPADRQGAQALQDGGRHGSGPHALPRARSP-ARPSPRSRLGVPATSFPRVAVTA 118
GQAA QG + +DGG S P P RSP SP P + P A
Sbjct: 1075 GQAAGGQQVAEQGPEPAEDGGHLASEPEVQPSDRSPLEHSSPEKEAPSPEKTLPPQKTVA 1134
Query: 119 AGS 121
A S
Sbjct: 1135 AES 1137
>gi|239749695 PREDICTED: hypothetical protein XP_002347121 [Homo
sapiens]
Length = 594
Score = 32.0 bits (71), Expect = 0.16
Identities = 27/68 (39%), Positives = 29/68 (42%), Gaps = 8/68 (11%)
Query: 73 AQALQDGGRHGSGPHALPRARSPARP-----SPRSRLGVPATSFPRVAVTAAGSARGSGR 127
AQ + GGR G GP A P A RP SP G P R A SAR S R
Sbjct: 516 AQRTELGGRVGKGPGAPPSALPGPRPRPDSLSPGEPPGPPTPPPARALPAAVASARCSLR 575
Query: 128 EEETAGGG 135
+ GGG
Sbjct: 576 D---PGGG 580
>gi|239743961 PREDICTED: hypothetical protein XP_002344246 [Homo
sapiens]
Length = 594
Score = 32.0 bits (71), Expect = 0.16
Identities = 27/68 (39%), Positives = 29/68 (42%), Gaps = 8/68 (11%)
Query: 73 AQALQDGGRHGSGPHALPRARSPARP-----SPRSRLGVPATSFPRVAVTAAGSARGSGR 127
AQ + GGR G GP A P A RP SP G P R A SAR S R
Sbjct: 516 AQRTELGGRVGKGPGAPPSALPGPRPRPDSLSPGEPPGPPTPPPARALPAAVASARCSLR 575
Query: 128 EEETAGGG 135
+ GGG
Sbjct: 576 D---PGGG 580
>gi|239757843 PREDICTED: hypothetical protein XP_002346356 [Homo
sapiens]
Length = 95
Score = 31.6 bits (70), Expect = 0.20
Identities = 19/57 (33%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
Query: 51 LGKPILQDLGQAAQLLPADRQGAQALQDGGRHGSGPHALPRARSPARPSPRSRLGVP 107
LG+ + + + A A R+ A+ G+ GPH P R P RP P + LG P
Sbjct: 39 LGREVGDSVNEGADCRRALRRLAECGTPRGQE-QGPHYRPTPRLPHRPFPAAALGAP 94
>gi|239752359 PREDICTED: hypothetical protein XP_002348213 [Homo
sapiens]
Length = 95
Score = 31.6 bits (70), Expect = 0.20
Identities = 19/57 (33%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
Query: 51 LGKPILQDLGQAAQLLPADRQGAQALQDGGRHGSGPHALPRARSPARPSPRSRLGVP 107
LG+ + + + A A R+ A+ G+ GPH P R P RP P + LG P
Sbjct: 39 LGREVGDSVNEGADCRRALRRLAECGTPRGQE-QGPHYRPTPRLPHRPFPAAALGAP 94
>gi|239746873 PREDICTED: hypothetical protein XP_002343872 [Homo
sapiens]
Length = 95
Score = 31.6 bits (70), Expect = 0.20
Identities = 19/57 (33%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
Query: 51 LGKPILQDLGQAAQLLPADRQGAQALQDGGRHGSGPHALPRARSPARPSPRSRLGVP 107
LG+ + + + A A R+ A+ G+ GPH P R P RP P + LG P
Sbjct: 39 LGREVGDSVNEGADCRRALRRLAECGTPRGQE-QGPHYRPTPRLPHRPFPAAALGAP 94
>gi|47078224 AT rich interactive domain 5A [Homo sapiens]
Length = 594
Score = 31.6 bits (70), Expect = 0.20
Identities = 20/64 (31%), Positives = 27/64 (42%), Gaps = 2/64 (3%)
Query: 71 QGAQALQDGGRHGSGPHALPRARSPARPSPRSRLGVPATSFPRVAVTAAGSARGSGREEE 130
+ Q ++G RHG+ P A P P SP+S G+ S R+ A G EE
Sbjct: 271 EALQCQEEGCRHGAEPQASPAVHLP--ESPQSPKGLTENSRHRLTPQEGLQAPGGSLREE 328
Query: 131 TAGG 134
G
Sbjct: 329 AQAG 332
>gi|122937424 one cut homeobox 3 [Homo sapiens]
Length = 494
Score = 31.6 bits (70), Expect = 0.20
Identities = 29/86 (33%), Positives = 35/86 (40%), Gaps = 7/86 (8%)
Query: 56 LQDLGQAAQLLPADRQGAQALQDGGRHGSGPHALPR-ARSPARPSPRSRLGVPAT-SF-- 111
LQ L A + Q A A G HG PHA P A +P P P RL + SF
Sbjct: 111 LQHLPPLAAVADKFHQHAAAAAVAGAHGGHPHAHPHPAAAPPPPPPPQRLAASVSGSFTL 170
Query: 112 ---PRVAVTAAGSARGSGREEETAGG 134
R A+ + G G +E A G
Sbjct: 171 MRDERAALASVGHLYGPYGKELPAMG 196
>gi|157909822 pragmin [Homo sapiens]
Length = 1402
Score = 31.2 bits (69), Expect = 0.27
Identities = 40/157 (25%), Positives = 51/157 (32%), Gaps = 32/157 (20%)
Query: 3 PDVDHLVVFLKEAEEVVAPLVPRGAV------------AGADVRLPEELGHIRFWDSARH 50
P+ DH ++L + V PRG V AG + E H +
Sbjct: 479 PEEDHRTIYLSSPDSAVGVQWPRGPVSQNSEVGEEETSAGQGLSSRESHAHSASESKPKE 538
Query: 51 -------------LGKPILQDLGQAAQLLPADRQGAQALQDGGRHGSGPHALPRARSPAR 97
+G P+ G AD L DG GS P ++ PA
Sbjct: 539 RPAIPPKLSKSSPVGSPVSPSAGGPPVSPLAD------LSDGSSGGSSIGPQPPSQGPAD 592
Query: 98 PSPRSRLGVPATSFP-RVAVTAAGSARGSGREEETAG 133
P+P R A S P R AA SA R AG
Sbjct: 593 PAPSCRTNGVAISDPSRCPQPAASSASEQRRPRFQAG 629
>gi|61966701 dorsal neural-tube nuclear protein [Homo sapiens]
Length = 398
Score = 31.2 bits (69), Expect = 0.27
Identities = 27/97 (27%), Positives = 36/97 (37%), Gaps = 20/97 (20%)
Query: 59 LGQAAQLLPADRQGAQALQDGGRHG---SGPHALPRARSPARPSPR-------------- 101
LG A+ + P++ G+ RH S P L R RSP RP
Sbjct: 97 LGAASTVDPSESTGSSTAPPTKRHCRSLSEPEELVRCRSPWRPGSSKVWTPVSKRRCDSG 156
Query: 102 ---SRLGVPATSFPRVAVTAAGSARGSGREEETAGGG 135
+R G P PR AV + G + +A GG
Sbjct: 157 GSATRQGSPGAVLPRSAVWSTGPTSPATPRPSSASGG 193
>gi|239757400 PREDICTED: hypothetical protein LOC147670 [Homo
sapiens]
Length = 338
Score = 30.8 bits (68), Expect = 0.35
Identities = 19/56 (33%), Positives = 25/56 (44%), Gaps = 2/56 (3%)
Query: 80 GRHGSGPHALPRARSPARPSPRSRLGVPATSFPRVA--VTAAGSARGSGREEETAG 133
G++GS P A P+AR PS +P T R A T G + +G AG
Sbjct: 65 GQNGSAPQAAPQARRTVPPSLAGSFSLPPTPDSRFADWRTTGGVRKAAGLGASVAG 120
>gi|169214485 PREDICTED: hypothetical protein LOC147670 [Homo
sapiens]
Length = 338
Score = 30.8 bits (68), Expect = 0.35
Identities = 19/56 (33%), Positives = 25/56 (44%), Gaps = 2/56 (3%)
Query: 80 GRHGSGPHALPRARSPARPSPRSRLGVPATSFPRVA--VTAAGSARGSGREEETAG 133
G++GS P A P+AR PS +P T R A T G + +G AG
Sbjct: 65 GQNGSAPQAAPQARRTVPPSLAGSFSLPPTPDSRFADWRTTGGVRKAAGLGASVAG 120
>gi|169213439 PREDICTED: hypothetical protein LOC147670 [Homo
sapiens]
Length = 338
Score = 30.8 bits (68), Expect = 0.35
Identities = 19/56 (33%), Positives = 25/56 (44%), Gaps = 2/56 (3%)
Query: 80 GRHGSGPHALPRARSPARPSPRSRLGVPATSFPRVA--VTAAGSARGSGREEETAG 133
G++GS P A P+AR PS +P T R A T G + +G AG
Sbjct: 65 GQNGSAPQAAPQARRTVPPSLAGSFSLPPTPDSRFADWRTTGGVRKAAGLGASVAG 120
>gi|153792074 proline rich 12 [Homo sapiens]
Length = 2036
Score = 30.8 bits (68), Expect = 0.35
Identities = 24/67 (35%), Positives = 27/67 (40%), Gaps = 10/67 (14%)
Query: 78 DGGRHGSGPHALPRARSPARPSPRSR---LGVPATSFPRVAVTAA-------GSARGSGR 127
DG R + P RP R R L VP T+ P A T G RG GR
Sbjct: 1150 DGPRRRGRKPTKAKRDGPPRPRGRPRIRPLEVPTTAGPASASTPTDGAKKPRGRGRGRGR 1209
Query: 128 EEETAGG 134
+ E AGG
Sbjct: 1210 KAEEAGG 1216
>gi|239757942 PREDICTED: hypothetical protein XP_002346387 [Homo
sapiens]
Length = 239
Score = 30.4 bits (67), Expect = 0.45
Identities = 31/126 (24%), Positives = 50/126 (39%), Gaps = 20/126 (15%)
Query: 28 VAGADVRLPEELGHI------RFWDSARHLGKPILQDLGQAAQL-----------LPADR 70
+AG +R PE +G + R W+ + + Q ++ +L P R
Sbjct: 44 MAGLSLRSPEVVGRVASRARARTWEGGKEGHAAVPQPATRSGRLGVWGGPLRHSWAPRPR 103
Query: 71 QGAQALQDGGRHG-SGPHALPRARSPARPSPRSRLGVPATSFPRV--AVTAAGSARGSGR 127
Q +Q GG GP P RS +R R RL + P+ ++ AA + + R
Sbjct: 104 QASQTRGGGGGPSLPGPAGRPSGRSRSRVGARGRLPSGGSHLPQPPRSLAAASAWQAVAR 163
Query: 128 EEETAG 133
E +G
Sbjct: 164 ELGLSG 169
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.316 0.136 0.405
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,083,188
Number of Sequences: 37866
Number of extensions: 324326
Number of successful extensions: 2050
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 73
Number of HSP's successfully gapped in prelim test: 139
Number of HSP's that attempted gapping in prelim test: 1887
Number of HSP's gapped (non-prelim): 298
length of query: 135
length of database: 18,247,518
effective HSP length: 91
effective length of query: 44
effective length of database: 14,801,712
effective search space: 651275328
effective search space used: 651275328
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 56 (26.2 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.