Guide to the Human Genome
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Name: LOC100290694 Sequence: fasta or formatted (95aa) NCBI GI: 239752359
Description:

PREDICTED: hypothetical protein XP_002348213

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            10.5         10           3
 C cysteine            3.2          3           1
 D aspartate           3.2          3           1
 E glutamate           6.3          6           1
 F phenylalanine       2.1          2           1
 G glycine             7.4          7           1
 H histidine           3.2          3           1
 I isoleucine          3.2          3           1
 K lysine              0.0          0           0
 L leucine            12.6         12           2
 M methionine          1.1          1           1
 N asparagine          2.1          2           1
 P proline             9.5          9           1
 Q glutamine           3.2          3           1
 R arginine           10.5         10           2
 S serine              8.4          8           2
 T threonine           6.3          6           2
 V valine              4.2          4           1
 W tryptophan          1.1          1           1
 Y tyrosine            2.1          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002348213 
LOC100291774          1.000   PREDICTED: hypothetical protein XP_002346356 
LOC100289421          1.000   PREDICTED: hypothetical protein XP_002343872 
LOC647163             0.041   PREDICTED: hypothetical protein 
LOC647163             0.041   PREDICTED: hypothetical protein 
LOC647163             0.041   PREDICTED: hypothetical protein 
TSC22D1               0.041   TSC22 domain family, member 1 isoform 1 
RIMS1                 0.035   regulating synaptic membrane exocytosis 1 
CREBBP                0.029   CREB binding protein isoform b 
CREBBP                0.029   CREB binding protein isoform a 
EP300                 0.023   E1A binding protein p300 
LOC100293769          0.017   PREDICTED: hypothetical protein 
LOC100291339          0.017   PREDICTED: hypothetical protein XP_002347364 
LOC100287626          0.017   PREDICTED: hypothetical protein XP_002343250 
LOC285679             0.017   hypothetical protein LOC285679 
MRGPRG                0.012   PREDICTED: MAS-related GPR, member G 
MRGPRG                0.012   PREDICTED: MAS-related GPR, member G 
LOC399829             0.012   PREDICTED: FLJ43861 protein 
MRGPRG                0.012   PREDICTED: MAS-related GPR, member G 
SLC4A2                0.012   solute carrier family 4, anion exchanger, member 2 ...
TNFSF11               0.012   tumor necrosis factor ligand superfamily, member 11 i...
LOC100293570          0.012   PREDICTED: hypothetical protein 
LOC729569             0.012   PREDICTED: hypothetical protein 
LOC100289470          0.012   PREDICTED: hypothetical protein XP_002342626 
HR                    0.012   hairless protein isoform a 
HR                    0.012   hairless protein isoform b 
GALNT12               0.012   N-acetylgalactosaminyltransferase 12 
NFKBIZ                0.012   nuclear factor of kappa light polypeptide gene enhan...
NFKBIZ                0.012   nuclear factor of kappa light polypeptide gene enhan...
PARP3                 0.012   poly (ADP-ribose) polymerase family, member 3 isofo...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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