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Search of human proteins with 239754314
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239754314 PREDICTED: similar to hCG2002168 [Homo sapiens]
(127 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239754314 PREDICTED: similar to hCG2002168 [Homo sapiens] 262 6e-71
gi|239748870 PREDICTED: similar to hCG2002168 [Homo sapiens] 262 6e-71
gi|239742899 PREDICTED: hypothetical protein XP_002342644 [Homo ... 262 6e-71
gi|217416354 sphingosine kinase type 1-interacting protein isofo... 37 0.005
gi|217416352 sphingosine kinase type 1-interacting protein isofo... 37 0.005
gi|126362967 Nck-associated protein 5 isoform 1 [Homo sapiens] 35 0.012
gi|54860079 nadrin isoform 1 [Homo sapiens] 32 0.17
gi|54860105 nadrin isoform 2 [Homo sapiens] 32 0.17
gi|98985819 interferon regulatory factor 7 isoform d [Homo sapiens] 30 0.50
gi|4758610 interferon regulatory factor 7 isoform a [Homo sapiens] 30 0.50
gi|226437595 actin filament associated protein 1-like 1 isoform ... 29 0.85
gi|55742689 actin filament associated protein 1-like 1 isoform 1... 29 0.85
gi|126091130 Gab3 protein isoform 1 [Homo sapiens] 29 0.85
gi|18079323 Gab3 protein isoform 2 [Homo sapiens] 29 0.85
gi|24308394 hypothetical protein LOC140893 [Homo sapiens] 29 0.85
gi|4503493 early growth response 1 [Homo sapiens] 29 1.1
gi|148806928 hypothetical protein LOC57482 [Homo sapiens] 29 1.1
gi|148727255 microtubule associated serine/threonine kinase fami... 29 1.1
gi|239752529 PREDICTED: similar to mucin [Homo sapiens] 28 1.5
gi|225735629 disco-interacting protein 2A isoform g [Homo sapiens] 28 1.9
gi|45827692 disco-interacting protein 2A isoform a [Homo sapiens] 28 1.9
gi|239753337 PREDICTED: hypothetical protein LOC389043 [Homo sap... 28 1.9
gi|239741781 PREDICTED: hypothetical protein LOC389043 [Homo sap... 28 1.9
gi|225735625 disco-interacting protein 2A isoform e [Homo sapiens] 28 1.9
gi|45827698 disco-interacting protein 2A isoform d [Homo sapiens] 28 1.9
gi|45827696 disco-interacting protein 2A isoform c [Homo sapiens] 28 1.9
gi|45827694 disco-interacting protein 2A isoform b [Homo sapiens] 28 1.9
gi|209413756 synapsin III isoform IIIg [Homo sapiens] 28 1.9
gi|209413752 synapsin III isoform IIIa [Homo sapiens] 28 1.9
gi|5032055 reticulon 2 isoform A [Homo sapiens] 28 1.9
>gi|239754314 PREDICTED: similar to hCG2002168 [Homo sapiens]
Length = 127
Score = 262 bits (669), Expect = 6e-71
Identities = 127/127 (100%), Positives = 127/127 (100%)
Query: 1 MTVCGFLVCLFVGLRKGEAKVPSLREAMEKVPSQGSVPHGAVRLKGLTGSSPHRTPPHLK 60
MTVCGFLVCLFVGLRKGEAKVPSLREAMEKVPSQGSVPHGAVRLKGLTGSSPHRTPPHLK
Sbjct: 1 MTVCGFLVCLFVGLRKGEAKVPSLREAMEKVPSQGSVPHGAVRLKGLTGSSPHRTPPHLK 60
Query: 61 PSFSATIQGTRSPELSKTHSGRKPSQAVTEGLWSGLERVFLSDTSRGQHSTESHRHLPAF 120
PSFSATIQGTRSPELSKTHSGRKPSQAVTEGLWSGLERVFLSDTSRGQHSTESHRHLPAF
Sbjct: 61 PSFSATIQGTRSPELSKTHSGRKPSQAVTEGLWSGLERVFLSDTSRGQHSTESHRHLPAF 120
Query: 121 PPQTLGG 127
PPQTLGG
Sbjct: 121 PPQTLGG 127
>gi|239748870 PREDICTED: similar to hCG2002168 [Homo sapiens]
Length = 127
Score = 262 bits (669), Expect = 6e-71
Identities = 127/127 (100%), Positives = 127/127 (100%)
Query: 1 MTVCGFLVCLFVGLRKGEAKVPSLREAMEKVPSQGSVPHGAVRLKGLTGSSPHRTPPHLK 60
MTVCGFLVCLFVGLRKGEAKVPSLREAMEKVPSQGSVPHGAVRLKGLTGSSPHRTPPHLK
Sbjct: 1 MTVCGFLVCLFVGLRKGEAKVPSLREAMEKVPSQGSVPHGAVRLKGLTGSSPHRTPPHLK 60
Query: 61 PSFSATIQGTRSPELSKTHSGRKPSQAVTEGLWSGLERVFLSDTSRGQHSTESHRHLPAF 120
PSFSATIQGTRSPELSKTHSGRKPSQAVTEGLWSGLERVFLSDTSRGQHSTESHRHLPAF
Sbjct: 61 PSFSATIQGTRSPELSKTHSGRKPSQAVTEGLWSGLERVFLSDTSRGQHSTESHRHLPAF 120
Query: 121 PPQTLGG 127
PPQTLGG
Sbjct: 121 PPQTLGG 127
>gi|239742899 PREDICTED: hypothetical protein XP_002342644 [Homo
sapiens]
Length = 127
Score = 262 bits (669), Expect = 6e-71
Identities = 127/127 (100%), Positives = 127/127 (100%)
Query: 1 MTVCGFLVCLFVGLRKGEAKVPSLREAMEKVPSQGSVPHGAVRLKGLTGSSPHRTPPHLK 60
MTVCGFLVCLFVGLRKGEAKVPSLREAMEKVPSQGSVPHGAVRLKGLTGSSPHRTPPHLK
Sbjct: 1 MTVCGFLVCLFVGLRKGEAKVPSLREAMEKVPSQGSVPHGAVRLKGLTGSSPHRTPPHLK 60
Query: 61 PSFSATIQGTRSPELSKTHSGRKPSQAVTEGLWSGLERVFLSDTSRGQHSTESHRHLPAF 120
PSFSATIQGTRSPELSKTHSGRKPSQAVTEGLWSGLERVFLSDTSRGQHSTESHRHLPAF
Sbjct: 61 PSFSATIQGTRSPELSKTHSGRKPSQAVTEGLWSGLERVFLSDTSRGQHSTESHRHLPAF 120
Query: 121 PPQTLGG 127
PPQTLGG
Sbjct: 121 PPQTLGG 127
>gi|217416354 sphingosine kinase type 1-interacting protein isoform
1 [Homo sapiens]
Length = 1700
Score = 36.6 bits (83), Expect = 0.005
Identities = 28/99 (28%), Positives = 48/99 (48%), Gaps = 9/99 (9%)
Query: 13 GLRKGEAKVPSLREAMEK---VPSQGSVPHGA--VRLKGLTGSSPHRTPPHLKPSFSATI 67
G+R G K P+L+ + + VP + + + LKG+ G ++P H + A+
Sbjct: 799 GVRPGLFKNPTLQSQLSRSHRVPDSSTATTSSKEIYLKGIAGEDT-KSPHHSENECRASS 857
Query: 68 QGTRSPELSKTHSGRKPSQAVTEGLWSGLERVFLSDTSR 106
+G RSP +S++ SG SQ E + + + TSR
Sbjct: 858 EGQRSPTVSQSRSG---SQEAEESIHPNTQEKYNCATSR 893
>gi|217416352 sphingosine kinase type 1-interacting protein isoform
2 [Homo sapiens]
Length = 1671
Score = 36.6 bits (83), Expect = 0.005
Identities = 28/99 (28%), Positives = 48/99 (48%), Gaps = 9/99 (9%)
Query: 13 GLRKGEAKVPSLREAMEK---VPSQGSVPHGA--VRLKGLTGSSPHRTPPHLKPSFSATI 67
G+R G K P+L+ + + VP + + + LKG+ G ++P H + A+
Sbjct: 799 GVRPGLFKNPTLQSQLSRSHRVPDSSTATTSSKEIYLKGIAGEDT-KSPHHSENECRASS 857
Query: 68 QGTRSPELSKTHSGRKPSQAVTEGLWSGLERVFLSDTSR 106
+G RSP +S++ SG SQ E + + + TSR
Sbjct: 858 EGQRSPTVSQSRSG---SQEAEESIHPNTQEKYNCATSR 893
>gi|126362967 Nck-associated protein 5 isoform 1 [Homo sapiens]
Length = 1909
Score = 35.4 bits (80), Expect = 0.012
Identities = 28/94 (29%), Positives = 39/94 (41%), Gaps = 6/94 (6%)
Query: 32 PSQGSVPHGAVRLKGLTGSSPHRT----PPHLKPSFSATIQGTRSPELSKTHSGRKPSQA 87
P + S+P G+ G+ S R+ PHLKP+ RS S THSG KPS
Sbjct: 1232 PLESSIP-GSDGRDGVDNRSMRRSLSSSKPHLKPALGMNGAKARSHSFS-THSGDKPSTP 1289
Query: 88 VTEGLWSGLERVFLSDTSRGQHSTESHRHLPAFP 121
EG ++ + RG T + + P
Sbjct: 1290 PIEGSGKVRTQIITNTAERGNSLTRQNSSTESSP 1323
>gi|54860079 nadrin isoform 1 [Homo sapiens]
Length = 881
Score = 31.6 bits (70), Expect = 0.17
Identities = 30/104 (28%), Positives = 41/104 (39%), Gaps = 16/104 (15%)
Query: 23 SLREAMEKV----PSQGSVPHGAVRLKGLTGSSPHRTPPHLKPSFSATIQGTRSPELSKT 78
+LR A++K P G+ P G + +G+S H PP L P TRSP
Sbjct: 628 TLRRAVKKPAPAPPKPGNPPPGHPGGQSSSGTSQH--PPSLSPK-----PPTRSPSPPTQ 680
Query: 79 HSGRKPSQAVTEGLWSGLERVFLSDTSRGQHSTESHRHLPAFPP 122
H+G+ P Q S R S ++ H P PP
Sbjct: 681 HTGQPPGQPSAPSQLSAPRRY-----SSSLSPIQAPNHPPPQPP 719
>gi|54860105 nadrin isoform 2 [Homo sapiens]
Length = 803
Score = 31.6 bits (70), Expect = 0.17
Identities = 30/104 (28%), Positives = 41/104 (39%), Gaps = 16/104 (15%)
Query: 23 SLREAMEKV----PSQGSVPHGAVRLKGLTGSSPHRTPPHLKPSFSATIQGTRSPELSKT 78
+LR A++K P G+ P G + +G+S H PP L P TRSP
Sbjct: 550 TLRRAVKKPAPAPPKPGNPPPGHPGGQSSSGTSQH--PPSLSPK-----PPTRSPSPPTQ 602
Query: 79 HSGRKPSQAVTEGLWSGLERVFLSDTSRGQHSTESHRHLPAFPP 122
H+G+ P Q S R S ++ H P PP
Sbjct: 603 HTGQPPGQPSAPSQLSAPRRY-----SSSLSPIQAPNHPPPQPP 641
>gi|98985819 interferon regulatory factor 7 isoform d [Homo sapiens]
Length = 516
Score = 30.0 bits (66), Expect = 0.50
Identities = 15/39 (38%), Positives = 19/39 (48%)
Query: 27 AMEKVPSQGSVPHGAVRLKGLTGSSPHRTPPHLKPSFSA 65
A+E PS G P + SPH+ P+L PS SA
Sbjct: 252 AVETTPSPGPQPAALTTGEAAAPESPHQAEPYLSPSPSA 290
>gi|4758610 interferon regulatory factor 7 isoform a [Homo sapiens]
Length = 503
Score = 30.0 bits (66), Expect = 0.50
Identities = 15/39 (38%), Positives = 19/39 (48%)
Query: 27 AMEKVPSQGSVPHGAVRLKGLTGSSPHRTPPHLKPSFSA 65
A+E PS G P + SPH+ P+L PS SA
Sbjct: 239 AVETTPSPGPQPAALTTGEAAAPESPHQAEPYLSPSPSA 277
>gi|226437595 actin filament associated protein 1-like 1 isoform 2
[Homo sapiens]
Length = 725
Score = 29.3 bits (64), Expect = 0.85
Identities = 20/82 (24%), Positives = 38/82 (46%), Gaps = 5/82 (6%)
Query: 32 PSQGSVPHGAV--RLKG---LTGSSPHRTPPHLKPSFSATIQGTRSPELSKTHSGRKPSQ 86
PS+G+ P A RL+ L P++ PP + + +SPE +H+G PS
Sbjct: 93 PSKGASPELAKSPRLRNAADLPPPLPNKPPPEDYYEEALPLGPGKSPEYISSHNGCSPSH 152
Query: 87 AVTEGLWSGLERVFLSDTSRGQ 108
++ +G + + + + G+
Sbjct: 153 SIVDGYYEDADSSYPATRVNGE 174
>gi|55742689 actin filament associated protein 1-like 1 isoform 1
[Homo sapiens]
Length = 768
Score = 29.3 bits (64), Expect = 0.85
Identities = 20/82 (24%), Positives = 38/82 (46%), Gaps = 5/82 (6%)
Query: 32 PSQGSVPHGAV--RLKG---LTGSSPHRTPPHLKPSFSATIQGTRSPELSKTHSGRKPSQ 86
PS+G+ P A RL+ L P++ PP + + +SPE +H+G PS
Sbjct: 93 PSKGASPELAKSPRLRNAADLPPPLPNKPPPEDYYEEALPLGPGKSPEYISSHNGCSPSH 152
Query: 87 AVTEGLWSGLERVFLSDTSRGQ 108
++ +G + + + + G+
Sbjct: 153 SIVDGYYEDADSSYPATRVNGE 174
>gi|126091130 Gab3 protein isoform 1 [Homo sapiens]
Length = 587
Score = 29.3 bits (64), Expect = 0.85
Identities = 22/61 (36%), Positives = 30/61 (49%), Gaps = 7/61 (11%)
Query: 23 SLREAMEKVPSQGSVPHGAVRLKGLTGSSPHRTPPHLKPSFSATIQGTRSPELSKTHSGR 82
SL ++ +QGS+P GA L ++ + P R P KPS + R E THSG
Sbjct: 280 SLSSTIQVDKNQGSLPCGAKELDIMSNTPPPRPP---KPSHLS----ERRQEEWSTHSGS 332
Query: 83 K 83
K
Sbjct: 333 K 333
>gi|18079323 Gab3 protein isoform 2 [Homo sapiens]
Length = 586
Score = 29.3 bits (64), Expect = 0.85
Identities = 22/61 (36%), Positives = 30/61 (49%), Gaps = 7/61 (11%)
Query: 23 SLREAMEKVPSQGSVPHGAVRLKGLTGSSPHRTPPHLKPSFSATIQGTRSPELSKTHSGR 82
SL ++ +QGS+P GA L ++ + P R P KPS + R E THSG
Sbjct: 279 SLSSTIQVDKNQGSLPCGAKELDIMSNTPPPRPP---KPSHLS----ERRQEEWSTHSGS 331
Query: 83 K 83
K
Sbjct: 332 K 332
>gi|24308394 hypothetical protein LOC140893 [Homo sapiens]
Length = 664
Score = 29.3 bits (64), Expect = 0.85
Identities = 15/38 (39%), Positives = 22/38 (57%)
Query: 39 HGAVRLKGLTGSSPHRTPPHLKPSFSATIQGTRSPELS 76
H V L+G + HRT P K S AT+ +R+P++S
Sbjct: 173 HQGVGLRGEEKPAGHRTSPVAKISPGATLPESRAPDMS 210
>gi|4503493 early growth response 1 [Homo sapiens]
Length = 543
Score = 28.9 bits (63), Expect = 1.1
Identities = 20/68 (29%), Positives = 34/68 (50%), Gaps = 19/68 (27%)
Query: 52 PHRTPPHLKPSFSATIQG-----TRSPELS---KTHSGRKPSQAVTEGLWSGLERVFLSD 103
P +TPPH +P ++ ++ +RS EL+ + H+G+KP Q R+ + +
Sbjct: 328 PSKTPPHERP-YACPVESCDRRFSRSDELTRHIRIHTGQKPFQC----------RICMRN 376
Query: 104 TSRGQHST 111
SR H T
Sbjct: 377 FSRSDHLT 384
>gi|148806928 hypothetical protein LOC57482 [Homo sapiens]
Length = 1233
Score = 28.9 bits (63), Expect = 1.1
Identities = 16/67 (23%), Positives = 27/67 (40%)
Query: 18 EAKVPSLREAMEKVPSQGSVPHGAVRLKGLTGSSPHRTPPHLKPSFSATIQGTRSPELSK 77
E K P +PS SVPH A+ + G P +K + ++ G + ++
Sbjct: 572 EPKAPKASPVQHALPSSLSVPHTAILVTGAQLCGPAVNLSQIKDTACKSLLGLEEKKHAE 631
Query: 78 THSGRKP 84
+G P
Sbjct: 632 APAGENP 638
>gi|148727255 microtubule associated serine/threonine kinase family
member 4 isoform a [Homo sapiens]
Length = 2434
Score = 28.9 bits (63), Expect = 1.1
Identities = 30/121 (24%), Positives = 45/121 (37%), Gaps = 8/121 (6%)
Query: 13 GLRKGEAKVPSLREAMEKVPSQGSVPHGAVRLKGLTGSSPHRTP--PHLKPSFSATIQGT 70
G+ KG + +K P++ P+G R TG S R+ P S S++ T
Sbjct: 2220 GVGKGFPEARGKGPGPQKPPTEADKPNGMKRSPSATGQSSFRSTALPEKSLSCSSSFPET 2279
Query: 71 RSPELSKTHSGRKPSQAVTEGLWSGLERVFLSDTSRGQHSTESHRH------LPAFPPQT 124
R+ + + S A G L D + Q + E H LP+F T
Sbjct: 2280 RAGVREASAASSDTSSAKAAGGMLELPAPSNRDHRKAQPAGEGRTHMTKSDSLPSFRVST 2339
Query: 125 L 125
L
Sbjct: 2340 L 2340
>gi|239752529 PREDICTED: similar to mucin [Homo sapiens]
Length = 594
Score = 28.5 bits (62), Expect = 1.5
Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 4/38 (10%)
Query: 52 PHRTPPHLKPSFSATIQGTRSPELSKTHSGRKPSQAVT 89
PH TP H PSF++ I T S +HS + A+T
Sbjct: 9 PHETPSHTVPSFTSLITTTD----STSHSNPSLTSAIT 42
Score = 26.9 bits (58), Expect = 4.2
Identities = 21/63 (33%), Positives = 30/63 (47%), Gaps = 8/63 (12%)
Query: 55 TPPHLKPSFSATIQGTRSPELSKTHSGRKPSQAV-TEGLWSGLERVF---LSDTSRGQHS 110
TP H PSF++ I T S +HS + A+ T G+ S +F ++ T HS
Sbjct: 182 TPSHSNPSFTSLITATE----STSHSPPSFTSAIATTGITSHSTPIFTSLIATTDSTSHS 237
Query: 111 TES 113
T S
Sbjct: 238 TPS 240
>gi|225735629 disco-interacting protein 2A isoform g [Homo sapiens]
Length = 1567
Score = 28.1 bits (61), Expect = 1.9
Identities = 23/98 (23%), Positives = 40/98 (40%), Gaps = 7/98 (7%)
Query: 33 SQGSVPHGAVRLKGLTGSSPHRTPPHLKPSFSATIQG---TRSPELSKTHSGRKPSQAVT 89
S S G++R G S+P ++ ++P IQG + S + +H G +P+ A +
Sbjct: 137 SSASEDEGSLRRPGRLTSTPLQSHSSVEPWLDRVIQGSSTSSSASSTSSHPGGRPTTAPS 196
Query: 90 EGLWSGLERVFLSDTSRGQHSTESHRHLPAFPPQTLGG 127
G + T+ +H L + PP G
Sbjct: 197 AAATPGA----AATTALAGLEAHTHIDLHSAPPDVTTG 230
>gi|45827692 disco-interacting protein 2A isoform a [Homo sapiens]
Length = 1571
Score = 28.1 bits (61), Expect = 1.9
Identities = 23/98 (23%), Positives = 40/98 (40%), Gaps = 7/98 (7%)
Query: 33 SQGSVPHGAVRLKGLTGSSPHRTPPHLKPSFSATIQG---TRSPELSKTHSGRKPSQAVT 89
S S G++R G S+P ++ ++P IQG + S + +H G +P+ A +
Sbjct: 137 SSASEDEGSLRRPGRLTSTPLQSHSSVEPWLDRVIQGSSTSSSASSTSSHPGGRPTTAPS 196
Query: 90 EGLWSGLERVFLSDTSRGQHSTESHRHLPAFPPQTLGG 127
G + T+ +H L + PP G
Sbjct: 197 AAATPGA----AATTALAGLEAHTHIDLHSAPPDVTTG 230
>gi|239753337 PREDICTED: hypothetical protein LOC389043 [Homo
sapiens]
Length = 128
Score = 28.1 bits (61), Expect = 1.9
Identities = 16/48 (33%), Positives = 23/48 (47%)
Query: 66 TIQGTRSPELSKTHSGRKPSQAVTEGLWSGLERVFLSDTSRGQHSTES 113
T+ R P+ S H GR+PS+ E L + + D+S Q S S
Sbjct: 53 TLGSRRIPDHSCVHPGREPSEGTVEIQLLTLASIRIPDSSGSQTSDNS 100
>gi|239741781 PREDICTED: hypothetical protein LOC389043 [Homo
sapiens]
Length = 128
Score = 28.1 bits (61), Expect = 1.9
Identities = 16/48 (33%), Positives = 23/48 (47%)
Query: 66 TIQGTRSPELSKTHSGRKPSQAVTEGLWSGLERVFLSDTSRGQHSTES 113
T+ R P+ S H GR+PS+ E L + + D+S Q S S
Sbjct: 53 TLGSRRIPDHSCVHPGREPSEGTVEIQLLTLASIRIPDSSGSQTSDNS 100
>gi|225735625 disco-interacting protein 2A isoform e [Homo sapiens]
Length = 1110
Score = 28.1 bits (61), Expect = 1.9
Identities = 23/98 (23%), Positives = 40/98 (40%), Gaps = 7/98 (7%)
Query: 33 SQGSVPHGAVRLKGLTGSSPHRTPPHLKPSFSATIQG---TRSPELSKTHSGRKPSQAVT 89
S S G++R G S+P ++ ++P IQG + S + +H G +P+ A +
Sbjct: 73 SSASEDEGSLRRPGRLTSTPLQSHSSVEPWLDRVIQGSSTSSSASSTSSHPGGRPTTAPS 132
Query: 90 EGLWSGLERVFLSDTSRGQHSTESHRHLPAFPPQTLGG 127
G + T+ +H L + PP G
Sbjct: 133 AAATPGA----AATTALAGLEAHTHIDLHSAPPDVTTG 166
>gi|45827698 disco-interacting protein 2A isoform d [Homo sapiens]
Length = 812
Score = 28.1 bits (61), Expect = 1.9
Identities = 23/98 (23%), Positives = 40/98 (40%), Gaps = 7/98 (7%)
Query: 33 SQGSVPHGAVRLKGLTGSSPHRTPPHLKPSFSATIQG---TRSPELSKTHSGRKPSQAVT 89
S S G++R G S+P ++ ++P IQG + S + +H G +P+ A +
Sbjct: 137 SSASEDEGSLRRPGRLTSTPLQSHSSVEPWLDRVIQGSSTSSSASSTSSHPGGRPTTAPS 196
Query: 90 EGLWSGLERVFLSDTSRGQHSTESHRHLPAFPPQTLGG 127
G + T+ +H L + PP G
Sbjct: 197 AAATPGA----AATTALAGLEAHTHIDLHSAPPDVTTG 230
>gi|45827696 disco-interacting protein 2A isoform c [Homo sapiens]
Length = 841
Score = 28.1 bits (61), Expect = 1.9
Identities = 23/98 (23%), Positives = 40/98 (40%), Gaps = 7/98 (7%)
Query: 33 SQGSVPHGAVRLKGLTGSSPHRTPPHLKPSFSATIQG---TRSPELSKTHSGRKPSQAVT 89
S S G++R G S+P ++ ++P IQG + S + +H G +P+ A +
Sbjct: 137 SSASEDEGSLRRPGRLTSTPLQSHSSVEPWLDRVIQGSSTSSSASSTSSHPGGRPTTAPS 196
Query: 90 EGLWSGLERVFLSDTSRGQHSTESHRHLPAFPPQTLGG 127
G + T+ +H L + PP G
Sbjct: 197 AAATPGA----AATTALAGLEAHTHIDLHSAPPDVTTG 230
>gi|45827694 disco-interacting protein 2A isoform b [Homo sapiens]
Length = 889
Score = 28.1 bits (61), Expect = 1.9
Identities = 23/98 (23%), Positives = 40/98 (40%), Gaps = 7/98 (7%)
Query: 33 SQGSVPHGAVRLKGLTGSSPHRTPPHLKPSFSATIQG---TRSPELSKTHSGRKPSQAVT 89
S S G++R G S+P ++ ++P IQG + S + +H G +P+ A +
Sbjct: 137 SSASEDEGSLRRPGRLTSTPLQSHSSVEPWLDRVIQGSSTSSSASSTSSHPGGRPTTAPS 196
Query: 90 EGLWSGLERVFLSDTSRGQHSTESHRHLPAFPPQTLGG 127
G + T+ +H L + PP G
Sbjct: 197 AAATPGA----AATTALAGLEAHTHIDLHSAPPDVTTG 230
>gi|209413756 synapsin III isoform IIIg [Homo sapiens]
Length = 579
Score = 28.1 bits (61), Expect = 1.9
Identities = 32/114 (28%), Positives = 45/114 (39%), Gaps = 9/114 (7%)
Query: 17 GEAKV-PSLREAMEKVPSQGSVPHGAVRLKGLTGS-SPHRTPPH----LKPSFSATIQ-- 68
G+A++ P L + + P QG +GS S R P L P + Q
Sbjct: 420 GQAQLGPQLGQPQPRPPPQGGPRQAQSPQPQRSGSPSQQRLSPQGQQPLSPQSGSPQQQR 479
Query: 69 GTRSPELSKTHSGRKPSQAVTEG-LWSGLERVFLSDTSRGQHSTESHRHLPAFP 121
SP+LS+ SG P+QA G + R + S Q ES + P P
Sbjct: 480 SPGSPQLSRASSGSSPNQASKPGATLASQPRPPVQGRSTSQQGEESKKPAPPHP 533
>gi|209413752 synapsin III isoform IIIa [Homo sapiens]
Length = 580
Score = 28.1 bits (61), Expect = 1.9
Identities = 32/114 (28%), Positives = 45/114 (39%), Gaps = 9/114 (7%)
Query: 17 GEAKV-PSLREAMEKVPSQGSVPHGAVRLKGLTGS-SPHRTPPH----LKPSFSATIQ-- 68
G+A++ P L + + P QG +GS S R P L P + Q
Sbjct: 421 GQAQLGPQLGQPQPRPPPQGGPRQAQSPQPQRSGSPSQQRLSPQGQQPLSPQSGSPQQQR 480
Query: 69 GTRSPELSKTHSGRKPSQAVTEG-LWSGLERVFLSDTSRGQHSTESHRHLPAFP 121
SP+LS+ SG P+QA G + R + S Q ES + P P
Sbjct: 481 SPGSPQLSRASSGSSPNQASKPGATLASQPRPPVQGRSTSQQGEESKKPAPPHP 534
>gi|5032055 reticulon 2 isoform A [Homo sapiens]
Length = 545
Score = 28.1 bits (61), Expect = 1.9
Identities = 21/59 (35%), Positives = 27/59 (45%), Gaps = 2/59 (3%)
Query: 42 VRLKGLTGSSPHRTPPHLKPSFSATIQGTRSPELSK-THSG-RKPSQAVTEGLWSGLER 98
+RL+ SSP P L P GT SP S+ ++SG +P E W LER
Sbjct: 190 LRLRLAQPSSPEVLTPQLSPGSGTPQAGTPSPSRSRDSNSGPEEPLLEEEEKQWGPLER 248
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.315 0.132 0.399
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,960,543
Number of Sequences: 37866
Number of extensions: 288081
Number of successful extensions: 1139
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 67
Number of HSP's that attempted gapping in prelim test: 1093
Number of HSP's gapped (non-prelim): 115
length of query: 127
length of database: 18,247,518
effective HSP length: 90
effective length of query: 37
effective length of database: 14,839,578
effective search space: 549064386
effective search space used: 549064386
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.