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Search of human proteins with 239754295
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239754295 PREDICTED: similar to ribosomal protein L36a [Homo
sapiens]
(105 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239754295 PREDICTED: similar to ribosomal protein L36a [Homo ... 224 1e-59
gi|239748834 PREDICTED: hypothetical protein XP_002346832 [Homo ... 224 1e-59
gi|10445223 ribosomal protein L36a [Homo sapiens] 172 7e-44
gi|4506651 ribosomal protein L36a-like protein [Homo sapiens] 171 1e-43
gi|239754757 PREDICTED: similar to ribosomal protein L36a [Homo ... 93 5e-20
gi|239749285 PREDICTED: hypothetical protein XP_002346982 [Homo ... 93 5e-20
gi|239743375 PREDICTED: hypothetical protein XP_002342844 [Homo ... 93 5e-20
gi|239509069 PREDICTED: similar to ribosomal protein L36a [Homo ... 93 5e-20
gi|122937341 hypothetical protein LOC388960 [Homo sapiens] 32 0.14
gi|26051237 nucleoporin 54kDa [Homo sapiens] 28 1.2
gi|88196790 coiled-coil domain containing 88 [Homo sapiens] 26 5.9
gi|225543463 tetratricopeptide repeat, ankyrin repeat and coiled... 26 7.7
gi|225543461 tetratricopeptide repeat, ankyrin repeat and coiled... 26 7.7
gi|153791492 eukaryotic translation initiation factor 3, subunit... 26 7.7
gi|7705266 NCK interacting protein with SH3 domain isoform 1 [Ho... 26 7.7
gi|37577148 NCK interacting protein with SH3 domain isoform 2 [H... 26 7.7
gi|163644333 zinc finger protein 397 opposite strand [Homo sapiens] 26 7.7
gi|116008458 CDC14 homolog B isoform 3 [Homo sapiens] 26 7.7
gi|4502699 CDC14 homolog B isoform 1 [Homo sapiens] 26 7.7
gi|15451936 CDC14 homolog B isoform 2 [Homo sapiens] 26 7.7
gi|83700233 eukaryotic translation initiation factor 3, subunit ... 26 7.7
gi|4503525 eukaryotic translation initiation factor 3, subunit C... 26 7.7
gi|62955803 nucleoporin 188kDa [Homo sapiens] 26 7.7
>gi|239754295 PREDICTED: similar to ribosomal protein L36a [Homo
sapiens]
Length = 105
Score = 224 bits (570), Expect = 1e-59
Identities = 105/105 (100%), Positives = 105/105 (100%)
Query: 1 MNIPKSHQTFYKKYGKHQPHKVIQYKKGKNSLYAQRKQHYDRKQGSYGGQTKPISQKKVK 60
MNIPKSHQTFYKKYGKHQPHKVIQYKKGKNSLYAQRKQHYDRKQGSYGGQTKPISQKKVK
Sbjct: 1 MNIPKSHQTFYKKYGKHQPHKVIQYKKGKNSLYAQRKQHYDRKQGSYGGQTKPISQKKVK 60
Query: 61 TIKKIVLRLECMEPNCRCKRMLASKTCKHFELGGDKTRKDQVIQF 105
TIKKIVLRLECMEPNCRCKRMLASKTCKHFELGGDKTRKDQVIQF
Sbjct: 61 TIKKIVLRLECMEPNCRCKRMLASKTCKHFELGGDKTRKDQVIQF 105
>gi|239748834 PREDICTED: hypothetical protein XP_002346832 [Homo
sapiens]
Length = 105
Score = 224 bits (570), Expect = 1e-59
Identities = 105/105 (100%), Positives = 105/105 (100%)
Query: 1 MNIPKSHQTFYKKYGKHQPHKVIQYKKGKNSLYAQRKQHYDRKQGSYGGQTKPISQKKVK 60
MNIPKSHQTFYKKYGKHQPHKVIQYKKGKNSLYAQRKQHYDRKQGSYGGQTKPISQKKVK
Sbjct: 1 MNIPKSHQTFYKKYGKHQPHKVIQYKKGKNSLYAQRKQHYDRKQGSYGGQTKPISQKKVK 60
Query: 61 TIKKIVLRLECMEPNCRCKRMLASKTCKHFELGGDKTRKDQVIQF 105
TIKKIVLRLECMEPNCRCKRMLASKTCKHFELGGDKTRKDQVIQF
Sbjct: 61 TIKKIVLRLECMEPNCRCKRMLASKTCKHFELGGDKTRKDQVIQF 105
>gi|10445223 ribosomal protein L36a [Homo sapiens]
Length = 106
Score = 172 bits (435), Expect = 7e-44
Identities = 81/105 (77%), Positives = 89/105 (84%)
Query: 1 MNIPKSHQTFYKKYGKHQPHKVIQYKKGKNSLYAQRKQHYDRKQGSYGGQTKPISQKKVK 60
+N+PK+ +TF KK GKHQPHKV QYKKGK+SLYAQ K+ YDRKQ YGGQTKPI +KK K
Sbjct: 2 VNVPKTRRTFCKKCGKHQPHKVTQYKKGKDSLYAQGKRRYDRKQSGYGGQTKPIFRKKAK 61
Query: 61 TIKKIVLRLECMEPNCRCKRMLASKTCKHFELGGDKTRKDQVIQF 105
T KKIVLRLEC+EPNCR KRMLA K CKHFELGGDK RK QVIQF
Sbjct: 62 TTKKIVLRLECVEPNCRSKRMLAIKRCKHFELGGDKKRKGQVIQF 106
>gi|4506651 ribosomal protein L36a-like protein [Homo sapiens]
Length = 106
Score = 171 bits (432), Expect = 1e-43
Identities = 80/105 (76%), Positives = 89/105 (84%)
Query: 1 MNIPKSHQTFYKKYGKHQPHKVIQYKKGKNSLYAQRKQHYDRKQGSYGGQTKPISQKKVK 60
+N+PK+ +TF KK GKHQPHKV QYKKGK+SLYAQ ++ YDRKQ YGGQTKPI +KK K
Sbjct: 2 VNVPKTRRTFCKKCGKHQPHKVTQYKKGKDSLYAQGRRRYDRKQSGYGGQTKPIFRKKAK 61
Query: 61 TIKKIVLRLECMEPNCRCKRMLASKTCKHFELGGDKTRKDQVIQF 105
T KKIVLRLEC+EPNCR KRMLA K CKHFELGGDK RK QVIQF
Sbjct: 62 TTKKIVLRLECVEPNCRSKRMLAIKRCKHFELGGDKKRKGQVIQF 106
>gi|239754757 PREDICTED: similar to ribosomal protein L36a [Homo
sapiens]
Length = 348
Score = 92.8 bits (229), Expect = 5e-20
Identities = 45/83 (54%), Positives = 58/83 (69%), Gaps = 9/83 (10%)
Query: 1 MNIPKSHQTFYKKYGKHQPHKVIQYKKGKNSLYAQRKQHYDRKQGSYGGQTKPISQKK-- 58
+N+PK+ +TF KK GKHQPHKV QYKKGK+SL+AQ K+ YDRKQ YGGQTKPI +KK
Sbjct: 2 VNVPKTRRTFCKKCGKHQPHKVTQYKKGKDSLHAQGKRRYDRKQSGYGGQTKPIFRKKGQ 61
Query: 59 -------VKTIKKIVLRLECMEP 74
+ T++ L C++P
Sbjct: 62 VVLADEALATVRTTEGPLACVQP 84
>gi|239749285 PREDICTED: hypothetical protein XP_002346982 [Homo
sapiens]
Length = 348
Score = 92.8 bits (229), Expect = 5e-20
Identities = 45/83 (54%), Positives = 58/83 (69%), Gaps = 9/83 (10%)
Query: 1 MNIPKSHQTFYKKYGKHQPHKVIQYKKGKNSLYAQRKQHYDRKQGSYGGQTKPISQKK-- 58
+N+PK+ +TF KK GKHQPHKV QYKKGK+SL+AQ K+ YDRKQ YGGQTKPI +KK
Sbjct: 2 VNVPKTRRTFCKKCGKHQPHKVTQYKKGKDSLHAQGKRRYDRKQSGYGGQTKPIFRKKGQ 61
Query: 59 -------VKTIKKIVLRLECMEP 74
+ T++ L C++P
Sbjct: 62 VVLADEALATVRTTEGPLACVQP 84
>gi|239743375 PREDICTED: hypothetical protein XP_002342844 [Homo
sapiens]
Length = 348
Score = 92.8 bits (229), Expect = 5e-20
Identities = 45/83 (54%), Positives = 58/83 (69%), Gaps = 9/83 (10%)
Query: 1 MNIPKSHQTFYKKYGKHQPHKVIQYKKGKNSLYAQRKQHYDRKQGSYGGQTKPISQKK-- 58
+N+PK+ +TF KK GKHQPHKV QYKKGK+SL+AQ K+ YDRKQ YGGQTKPI +KK
Sbjct: 2 VNVPKTRRTFCKKCGKHQPHKVTQYKKGKDSLHAQGKRRYDRKQSGYGGQTKPIFRKKGQ 61
Query: 59 -------VKTIKKIVLRLECMEP 74
+ T++ L C++P
Sbjct: 62 VVLADEALATVRTTEGPLACVQP 84
>gi|239509069 PREDICTED: similar to ribosomal protein L36a [Homo
sapiens]
Length = 348
Score = 92.8 bits (229), Expect = 5e-20
Identities = 45/83 (54%), Positives = 58/83 (69%), Gaps = 9/83 (10%)
Query: 1 MNIPKSHQTFYKKYGKHQPHKVIQYKKGKNSLYAQRKQHYDRKQGSYGGQTKPISQKK-- 58
+N+PK+ +TF KK GKHQPHKV QYKKGK+SL+AQ K+ YDRKQ YGGQTKPI +KK
Sbjct: 2 VNVPKTRRTFCKKCGKHQPHKVTQYKKGKDSLHAQGKRRYDRKQSGYGGQTKPIFRKKGQ 61
Query: 59 -------VKTIKKIVLRLECMEP 74
+ T++ L C++P
Sbjct: 62 VVLADEALATVRTTEGPLACVQP 84
>gi|122937341 hypothetical protein LOC388960 [Homo sapiens]
Length = 922
Score = 31.6 bits (70), Expect = 0.14
Identities = 23/79 (29%), Positives = 35/79 (44%), Gaps = 9/79 (11%)
Query: 13 KYGKHQPHKVIQYKKGKNSLYAQRKQHYDRKQGSYGGQTKPISQKKVKTIKKIVLRLECM 72
K+ ++PHK + K + Q K +RK S + S KKVK +K +
Sbjct: 548 KHSSNKPHKAASSRISKTKSHGQEKTKGNRKNSSKKSEESKQSGKKVKVEEKQTI----- 602
Query: 73 EPNCRCKR---MLASKTCK 88
PN + K+ L+ KT K
Sbjct: 603 -PNMKRKKNQPELSQKTLK 620
>gi|26051237 nucleoporin 54kDa [Homo sapiens]
Length = 507
Score = 28.5 bits (62), Expect = 1.2
Identities = 21/86 (24%), Positives = 42/86 (48%), Gaps = 5/86 (5%)
Query: 22 VIQYKKGKNSLYAQRKQHYDRKQGSYGG-QTKPISQKKVKTIK----KIVLRLECMEPNC 76
V+ + K + + +Q++Q + GG QT ++ + KT+ ++V+ + PN
Sbjct: 192 VLVFNKKETEIRSQQQQLVESLHKVLGGNQTLTVNVEGTKTLPDDQTEVVIYVVERSPNG 251
Query: 77 RCKRMLASKTCKHFELGGDKTRKDQV 102
+R+ A+ HFE KT+ Q+
Sbjct: 252 TSRRVPATTLYAHFEQANIKTQLQQL 277
>gi|88196790 coiled-coil domain containing 88 [Homo sapiens]
Length = 1476
Score = 26.2 bits (56), Expect = 5.9
Identities = 11/40 (27%), Positives = 22/40 (55%)
Query: 35 QRKQHYDRKQGSYGGQTKPISQKKVKTIKKIVLRLECMEP 74
+ + H R+Q Y Q + ++K K ++KI+ + +EP
Sbjct: 1265 ESRDHLHREQREYLDQLNALRREKQKLVEKIMDQYRVLEP 1304
>gi|225543463 tetratricopeptide repeat, ankyrin repeat and coiled-coil
containing 1 isoform 2 [Homo sapiens]
Length = 1390
Score = 25.8 bits (55), Expect = 7.7
Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
Query: 23 IQYKKGKNSLYAQRKQHYDRK--QGSYGGQTKPISQKKV 59
+ YKKGK AQR Q+ RK + +G +P ++ +V
Sbjct: 1290 VMYKKGKMKEAAQRYQYALRKFPREGFGEDMRPFNELRV 1328
>gi|225543461 tetratricopeptide repeat, ankyrin repeat and coiled-coil
containing 1 isoform 1 [Homo sapiens]
Length = 1861
Score = 25.8 bits (55), Expect = 7.7
Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
Query: 23 IQYKKGKNSLYAQRKQHYDRK--QGSYGGQTKPISQKKV 59
+ YKKGK AQR Q+ RK + +G +P ++ +V
Sbjct: 1298 VMYKKGKMKEAAQRYQYALRKFPREGFGEDMRPFNELRV 1336
>gi|153791492 eukaryotic translation initiation factor 3, subunit
C-like [Homo sapiens]
Length = 914
Score = 25.8 bits (55), Expect = 7.7
Identities = 11/32 (34%), Positives = 18/32 (56%)
Query: 18 QPHKVIQYKKGKNSLYAQRKQHYDRKQGSYGG 49
Q + +Q + SL ++ +D KQG+YGG
Sbjct: 853 QQNLALQLAEKLGSLVENNERVFDHKQGTYGG 884
>gi|7705266 NCK interacting protein with SH3 domain isoform 1 [Homo
sapiens]
Length = 722
Score = 25.8 bits (55), Expect = 7.7
Identities = 11/37 (29%), Positives = 20/37 (54%)
Query: 59 VKTIKKIVLRLECMEPNCRCKRMLASKTCKHFELGGD 95
++ I + +L E P C+ RM+ + CK F + G+
Sbjct: 683 LQAILRRILNEEETSPQCQMDRMIVREMCKEFLVLGE 719
>gi|37577148 NCK interacting protein with SH3 domain isoform 2 [Homo
sapiens]
Length = 715
Score = 25.8 bits (55), Expect = 7.7
Identities = 11/37 (29%), Positives = 20/37 (54%)
Query: 59 VKTIKKIVLRLECMEPNCRCKRMLASKTCKHFELGGD 95
++ I + +L E P C+ RM+ + CK F + G+
Sbjct: 676 LQAILRRILNEEETSPQCQMDRMIVREMCKEFLVLGE 712
>gi|163644333 zinc finger protein 397 opposite strand [Homo sapiens]
Length = 494
Score = 25.8 bits (55), Expect = 7.7
Identities = 17/72 (23%), Positives = 32/72 (44%), Gaps = 13/72 (18%)
Query: 44 QGSYGGQTKPISQKKVKTIKKIVLRLECMEPNCRCKRML------------ASKTC-KHF 90
+GS+ + I+Q+ V T +K+ +C + C+ +++ A K C K F
Sbjct: 279 EGSFSMNSNDITQQSVDTREKLYECFDCGKAFCQSSKLIRHQRIHTGERPYACKECGKAF 338
Query: 91 ELGGDKTRKDQV 102
L D R ++
Sbjct: 339 SLSSDLVRHQRI 350
>gi|116008458 CDC14 homolog B isoform 3 [Homo sapiens]
Length = 461
Score = 25.8 bits (55), Expect = 7.7
Identities = 15/48 (31%), Positives = 21/48 (43%), Gaps = 2/48 (4%)
Query: 4 PKSHQTFYKKYGKHQPHKVIQYKKGKN--SLYAQRKQHYDRKQGSYGG 49
P S Y +H P IQY K N ++ K+ YD K+ + G
Sbjct: 193 PHSRARLESGYHQHSPETYIQYFKNHNVTTIIRLNKRMYDAKRFTDAG 240
>gi|4502699 CDC14 homolog B isoform 1 [Homo sapiens]
Length = 459
Score = 25.8 bits (55), Expect = 7.7
Identities = 15/48 (31%), Positives = 21/48 (43%), Gaps = 2/48 (4%)
Query: 4 PKSHQTFYKKYGKHQPHKVIQYKKGKN--SLYAQRKQHYDRKQGSYGG 49
P S Y +H P IQY K N ++ K+ YD K+ + G
Sbjct: 230 PHSRARLESGYHQHSPETYIQYFKNHNVTTIIRLNKRMYDAKRFTDAG 277
>gi|15451936 CDC14 homolog B isoform 2 [Homo sapiens]
Length = 498
Score = 25.8 bits (55), Expect = 7.7
Identities = 15/48 (31%), Positives = 21/48 (43%), Gaps = 2/48 (4%)
Query: 4 PKSHQTFYKKYGKHQPHKVIQYKKGKN--SLYAQRKQHYDRKQGSYGG 49
P S Y +H P IQY K N ++ K+ YD K+ + G
Sbjct: 230 PHSRARLESGYHQHSPETYIQYFKNHNVTTIIRLNKRMYDAKRFTDAG 277
>gi|83700233 eukaryotic translation initiation factor 3, subunit C
[Homo sapiens]
Length = 913
Score = 25.8 bits (55), Expect = 7.7
Identities = 11/32 (34%), Positives = 18/32 (56%)
Query: 18 QPHKVIQYKKGKNSLYAQRKQHYDRKQGSYGG 49
Q + +Q + SL ++ +D KQG+YGG
Sbjct: 852 QQNLALQLAEKLGSLVENNERVFDHKQGTYGG 883
>gi|4503525 eukaryotic translation initiation factor 3, subunit C
[Homo sapiens]
Length = 913
Score = 25.8 bits (55), Expect = 7.7
Identities = 11/32 (34%), Positives = 18/32 (56%)
Query: 18 QPHKVIQYKKGKNSLYAQRKQHYDRKQGSYGG 49
Q + +Q + SL ++ +D KQG+YGG
Sbjct: 852 QQNLALQLAEKLGSLVENNERVFDHKQGTYGG 883
>gi|62955803 nucleoporin 188kDa [Homo sapiens]
Length = 1749
Score = 25.8 bits (55), Expect = 7.7
Identities = 9/20 (45%), Positives = 14/20 (70%)
Query: 9 TFYKKYGKHQPHKVIQYKKG 28
+FY + KH+PH VI ++ G
Sbjct: 472 SFYNELYKHKPHDVISHEDG 491
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.319 0.134 0.403
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,049,485
Number of Sequences: 37866
Number of extensions: 148009
Number of successful extensions: 401
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 385
Number of HSP's gapped (non-prelim): 23
length of query: 105
length of database: 18,247,518
effective HSP length: 76
effective length of query: 29
effective length of database: 15,369,702
effective search space: 445721358
effective search space used: 445721358
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.