Guide to the Human Genome
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Name: LOC100290073 Sequence: fasta or formatted (105aa) NCBI GI: 239748834
Description:

PREDICTED: hypothetical protein XP_002346832

Referenced in:

Ribosomes

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             1.9          2           1
 C cysteine            3.8          4           1
 D aspartate           2.9          3           1
 E glutamate           2.9          3           1
 F phenylalanine       2.9          3           1
 G glycine             6.7          7           2
 H histidine           4.8          5           1
 I isoleucine          5.7          6           1
 K lysine             20.0         21           2
 L leucine             4.8          5           1
 M methionine          2.9          3           1
 N asparagine          2.9          3           1
 P proline             3.8          4           1
 Q glutamine           9.5         10           1
 R arginine            5.7          6           1
 S serine              4.8          5           1
 T threonine           4.8          5           1
 V valine              3.8          4           1
 W tryptophan          0.0          0           0
 Y tyrosine            5.7          6           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002346832 
LOC100293876          1.000   PREDICTED: similar to ribosomal protein L36a 
RPL36A                0.739   ribosomal protein L36a 
RPL36AL               0.734   ribosomal protein L36a-like protein 
LOC100293166          0.342   PREDICTED: similar to ribosomal protein L36a 
LOC100290185          0.342   PREDICTED: hypothetical protein XP_002346982 
LOC100288541          0.342   PREDICTED: hypothetical protein XP_002342844 
LOC100288541          0.342   PREDICTED: similar to ribosomal protein L36a 
C2orf78               0.035   hypothetical protein LOC388960 
NUP54                 0.015   nucleoporin 54kDa 
CCDC88B               0.005   coiled-coil domain containing 88 
TANC1                 0.005   tetratricopeptide repeat, ankyrin repeat and coiled...
TANC1                 0.005   tetratricopeptide repeat, ankyrin repeat and coiled...
EIF3CL                0.005   eukaryotic translation initiation factor 3, subunit...
NCKIPSD               0.005   NCK interacting protein with SH3 domain isoform 1 [Ho...
NCKIPSD               0.005   NCK interacting protein with SH3 domain isoform 2 [H...
ZNF397OS              0.005   zinc finger protein 397 opposite strand 
CDC14B                0.005   CDC14 homolog B isoform 3 
CDC14B                0.005   CDC14 homolog B isoform 1 
CDC14B                0.005   CDC14 homolog B isoform 2 
EIF3C                 0.005   eukaryotic translation initiation factor 3, subunit ...
EIF3C                 0.005   eukaryotic translation initiation factor 3, subunit C...
NUP188                0.005   nucleoporin 188kDa 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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