Guide to the Human Genome
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Name: RPL36A Sequence: fasta or formatted (106aa) NCBI GI: 10445223
Description:

ribosomal protein L36a

Referenced in:

Ribosomes

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             2.8          3           1
 C cysteine            4.7          5           1
 D aspartate           2.8          3           1
 E glutamate           2.8          3           1
 F phenylalanine       3.8          4           1
 G glycine             8.5          9           2
 H histidine           2.8          3           1
 I isoleucine          3.8          4           1
 K lysine             20.8         22           2
 L leucine             4.7          5           1
 M methionine          1.9          2           1
 N asparagine          1.9          2           1
 P proline             3.8          4           1
 Q glutamine           6.6          7           1
 R arginine           10.4         11           2
 S serine              2.8          3           1
 T threonine           5.7          6           2
 V valine              5.7          6           1
 W tryptophan          0.0          0           0
 Y tyrosine            3.8          4           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   ribosomal protein L36a 
RPL36AL               0.995   ribosomal protein L36a-like protein 
LOC100293876          0.739   PREDICTED: similar to ribosomal protein L36a 
LOC100290073          0.739   PREDICTED: hypothetical protein XP_002346832 
LOC100293166          0.528   PREDICTED: similar to ribosomal protein L36a 
LOC100290185          0.528   PREDICTED: hypothetical protein XP_002346982 
LOC100288541          0.528   PREDICTED: hypothetical protein XP_002342844 
LOC100288541          0.528   PREDICTED: similar to ribosomal protein L36a 
BDP1                  0.020   transcription factor-like nuclear regulator 
GREM1                 0.015   gremlin-1 precursor 
C22orf30              0.015   hypothetical protein LOC253143 
KIAA0467              0.010   hypothetical protein LOC23334 
HMGB3                 0.010   high-mobility group box 3 
CIR1                  0.010   CBF1 interacting corepressor 
CHD8                  0.010   chromodomain helicase DNA binding protein 8 
C2orf78               0.010   hypothetical protein LOC388960 
RABGEF1               0.010   RAB guanine nucleotide exchange factor (GEF) 1 
LOC100293353          0.005   PREDICTED: similar to Coiled-coil domain-containing...
LOC100287980          0.005   PREDICTED: similar to Coiled-coil domain-containing...
LOC100287980          0.005   PREDICTED: hypothetical protein XP_002342885 
ZFP64                 0.005   zinc finger protein 64 isoform d 
ZFP64                 0.005   zinc finger protein 64 isoform c 
ZFP64                 0.005   zinc finger protein 64 isoform a 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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