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Search of human proteins with 239754185
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239754185 PREDICTED: hypothetical protein [Homo sapiens]
(45 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239754185 PREDICTED: hypothetical protein [Homo sapiens] 96 8e-21
gi|169167405 PREDICTED: hypothetical protein [Homo sapiens] 78 2e-15
gi|239753274 PREDICTED: hypothetical protein [Homo sapiens] 30 0.42
gi|239747844 PREDICTED: hypothetical protein XP_002346445 [Homo ... 30 0.42
gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens] 29 0.93
gi|224548936 hypothetical protein LOC100170229 [Homo sapiens] 28 1.6
gi|62460633 RNA-binding motif protein 16 [Homo sapiens] 28 1.6
gi|194272140 dendrin [Homo sapiens] 27 2.7
gi|171184451 centrosome-associated protein 350 [Homo sapiens] 27 3.5
gi|47271406 bin3, bicoid-interacting 3 [Homo sapiens] 27 4.6
gi|120587019 zinc finger protein 318 [Homo sapiens] 27 4.6
gi|239757099 PREDICTED: hypothetical protein [Homo sapiens] 26 6.0
gi|239751605 PREDICTED: hypothetical protein XP_002347934 [Homo ... 26 6.0
gi|239746122 PREDICTED: hypothetical protein XP_002344202 [Homo ... 26 6.0
gi|27262645 ataxin 2 related protein isoform B [Homo sapiens] 26 6.0
gi|27262653 ataxin 2 related protein isoform E [Homo sapiens] 26 6.0
gi|166795264 AE binding protein 2 isoform b [Homo sapiens] 26 6.0
gi|27262649 ataxin 2 related protein isoform C [Homo sapiens] 26 6.0
gi|166795262 AE binding protein 2 isoform a [Homo sapiens] 26 6.0
gi|27262647 ataxin 2 related protein isoform A [Homo sapiens] 26 6.0
gi|27262651 ataxin 2 related protein isoform D [Homo sapiens] 26 6.0
gi|226509740 SR-related CTD-associated factor 1 [Homo sapiens] 26 7.8
gi|51173735 ras responsive element binding protein 1 isoform 2 [... 26 7.8
gi|51173737 ras responsive element binding protein 1 isoform 1 [... 26 7.8
gi|8850232 protocadherin gamma subfamily A, 12 isoform 1 precurs... 26 7.8
gi|14277679 protocadherin gamma subfamily C, 3 isoform 3 [Homo s... 26 7.8
gi|14277675 protocadherin gamma subfamily C, 3 isoform 1 precurs... 26 7.8
gi|11128025 protocadherin gamma subfamily C, 4 isoform 1 precurs... 26 7.8
gi|11128023 protocadherin gamma subfamily C, 5 isoform 1 precurs... 26 7.8
gi|209862765 RUN and SH3 domain containing 2 [Homo sapiens] 26 7.8
>gi|239754185 PREDICTED: hypothetical protein [Homo sapiens]
Length = 45
Score = 95.5 bits (236), Expect = 8e-21
Identities = 45/45 (100%), Positives = 45/45 (100%)
Query: 1 MEWAGRAREETPGPASTASRTRVHQQRRGSAPRGGRESRSRRGGR 45
MEWAGRAREETPGPASTASRTRVHQQRRGSAPRGGRESRSRRGGR
Sbjct: 1 MEWAGRAREETPGPASTASRTRVHQQRRGSAPRGGRESRSRRGGR 45
>gi|169167405 PREDICTED: hypothetical protein [Homo sapiens]
Length = 141
Score = 77.8 bits (190), Expect = 2e-15
Identities = 39/50 (78%), Positives = 40/50 (80%), Gaps = 6/50 (12%)
Query: 1 MEWAGRAREETPGPASTASRTRVHQQRRGSAPRGGRE------SRSRRGG 44
MEWAGRAREETPGPASTASRTRVHQQRRGSAPRGG + RRGG
Sbjct: 1 MEWAGRAREETPGPASTASRTRVHQQRRGSAPRGGESPDPGAGAGDRRGG 50
>gi|239753274 PREDICTED: hypothetical protein [Homo sapiens]
Length = 263
Score = 30.0 bits (66), Expect = 0.42
Identities = 14/32 (43%), Positives = 17/32 (53%)
Query: 4 AGRAREETPGPASTASRTRVHQQRRGSAPRGG 35
AG + P P +A +H RR SAPRGG
Sbjct: 17 AGTGQPSPPSPERSACGCGLHLSRRKSAPRGG 48
>gi|239747844 PREDICTED: hypothetical protein XP_002346445 [Homo
sapiens]
Length = 263
Score = 30.0 bits (66), Expect = 0.42
Identities = 14/32 (43%), Positives = 17/32 (53%)
Query: 4 AGRAREETPGPASTASRTRVHQQRRGSAPRGG 35
AG + P P +A +H RR SAPRGG
Sbjct: 17 AGTGQPSPPSPERSACGCGLHLSRRKSAPRGG 48
>gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens]
Length = 2752
Score = 28.9 bits (63), Expect = 0.93
Identities = 16/37 (43%), Positives = 19/37 (51%)
Query: 5 GRAREETPGPASTASRTRVHQQRRGSAPRGGRESRSR 41
GR+R TP S SR+R +R S R R RSR
Sbjct: 667 GRSRSRTPARRSGRSRSRTPARRGRSRSRTPRRGRSR 703
Score = 28.5 bits (62), Expect = 1.2
Identities = 15/41 (36%), Positives = 19/41 (46%)
Query: 5 GRAREETPGPASTASRTRVHQQRRGSAPRGGRESRSRRGGR 45
GR+R TP + SRT ++ R P SRSR R
Sbjct: 582 GRSRSRTPARRRSRSRTPTRRRSRSRTPARRGRSRSRTPAR 622
Score = 26.9 bits (58), Expect = 3.5
Identities = 17/43 (39%), Positives = 24/43 (55%), Gaps = 3/43 (6%)
Query: 5 GRAREETPGPASTASRTRVHQQRRGSAP--RGGRESRSRRGGR 45
GR+R TP + +R+ V ++ R +P R GR SRSR R
Sbjct: 613 GRSRSRTPARRRSRTRSPVRRRSRSRSPARRSGR-SRSRTPAR 654
Score = 26.2 bits (56), Expect = 6.0
Identities = 19/42 (45%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
Query: 5 GRAREETPGPASTASRTRVHQQRRG-SAPRGGRESRSRRGGR 45
GR+R TP SR+R Q RR SA R GR +R GR
Sbjct: 493 GRSRSRTPTKRG-HSRSRSPQWRRSRSAQRWGRSRSPQRRGR 533
>gi|224548936 hypothetical protein LOC100170229 [Homo sapiens]
Length = 715
Score = 28.1 bits (61), Expect = 1.6
Identities = 14/40 (35%), Positives = 20/40 (50%)
Query: 6 RAREETPGPASTASRTRVHQQRRGSAPRGGRESRSRRGGR 45
R+ + +P AST R R H R G A R + ++G R
Sbjct: 130 RSSKRSPSRASTPGRIRTHGARPGMASRVRTPTSQQKGSR 169
>gi|62460633 RNA-binding motif protein 16 [Homo sapiens]
Length = 1271
Score = 28.1 bits (61), Expect = 1.6
Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Query: 9 EETPGPASTASRTRVHQQRRGSAPRGGRESRSRRGGR 45
E+ + SR+R H + R +PR R SRSR G R
Sbjct: 388 EQEAKKVAVRSRSRTHSRSRSRSPR-KRRSRSRSGSR 423
>gi|194272140 dendrin [Homo sapiens]
Length = 711
Score = 27.3 bits (59), Expect = 2.7
Identities = 14/29 (48%), Positives = 17/29 (58%)
Query: 4 AGRAREETPGPASTASRTRVHQQRRGSAP 32
AGR TPGP + A R V + RR +AP
Sbjct: 596 AGRGWARTPGPYAGALREAVSRIRRHTAP 624
>gi|171184451 centrosome-associated protein 350 [Homo sapiens]
Length = 3117
Score = 26.9 bits (58), Expect = 3.5
Identities = 12/27 (44%), Positives = 16/27 (59%)
Query: 18 ASRTRVHQQRRGSAPRGGRESRSRRGG 44
A R +QR S+ RGGRE ++ GG
Sbjct: 440 APRMEPKEQRTASSDRGGRERTAKSGG 466
>gi|47271406 bin3, bicoid-interacting 3 [Homo sapiens]
Length = 689
Score = 26.6 bits (57), Expect = 4.6
Identities = 13/38 (34%), Positives = 18/38 (47%)
Query: 4 AGRAREETPGPASTASRTRVHQQRRGSAPRGGRESRSR 41
A E+PG A+T+S QQ RG P+ +R
Sbjct: 62 AAAVGRESPGAAATSSSGPQAQQHRGGGPQAQSHGEAR 99
>gi|120587019 zinc finger protein 318 [Homo sapiens]
Length = 2279
Score = 26.6 bits (57), Expect = 4.6
Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Query: 4 AGRAREETPGP--ASTASRTRVHQQRRGSAPRGGRESRSRRGGR 45
+G AR +P P + ++SRT + R S RG R S S GR
Sbjct: 33 SGPARRSSPPPPPSGSSSRTPARRPRSPSGHRGRRASPSPPRGR 76
>gi|239757099 PREDICTED: hypothetical protein [Homo sapiens]
Length = 208
Score = 26.2 bits (56), Expect = 6.0
Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Query: 6 RAREETPGPASTASRTRVHQQRRGSAPRGGRESRSR 41
R E +P PA A R H +R ++P G E+R+R
Sbjct: 73 RGPEASPRPAPRA-RAHAHSRRLPASPTGPPETRAR 107
>gi|239751605 PREDICTED: hypothetical protein XP_002347934 [Homo
sapiens]
Length = 208
Score = 26.2 bits (56), Expect = 6.0
Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Query: 6 RAREETPGPASTASRTRVHQQRRGSAPRGGRESRSR 41
R E +P PA A R H +R ++P G E+R+R
Sbjct: 73 RGPEASPRPAPRA-RAHAHSRRLPASPTGPPETRAR 107
>gi|239746122 PREDICTED: hypothetical protein XP_002344202 [Homo
sapiens]
Length = 208
Score = 26.2 bits (56), Expect = 6.0
Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Query: 6 RAREETPGPASTASRTRVHQQRRGSAPRGGRESRSR 41
R E +P PA A R H +R ++P G E+R+R
Sbjct: 73 RGPEASPRPAPRA-RAHAHSRRLPASPTGPPETRAR 107
>gi|27262645 ataxin 2 related protein isoform B [Homo sapiens]
Length = 1062
Score = 26.2 bits (56), Expect = 6.0
Identities = 15/36 (41%), Positives = 17/36 (47%)
Query: 10 ETPGPASTASRTRVHQQRRGSAPRGGRESRSRRGGR 45
E+P AS + QR PRGG S RGGR
Sbjct: 338 ESPSLASREGKYIPLPQRVREGPRGGVRCSSSRGGR 373
>gi|27262653 ataxin 2 related protein isoform E [Homo sapiens]
Length = 1044
Score = 26.2 bits (56), Expect = 6.0
Identities = 15/36 (41%), Positives = 17/36 (47%)
Query: 10 ETPGPASTASRTRVHQQRRGSAPRGGRESRSRRGGR 45
E+P AS + QR PRGG S RGGR
Sbjct: 338 ESPSLASREGKYIPLPQRVREGPRGGVRCSSSRGGR 373
>gi|166795264 AE binding protein 2 isoform b [Homo sapiens]
Length = 517
Score = 26.2 bits (56), Expect = 6.0
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 6 RAREETPGPASTASRTRVHQQRRGSAPR 33
+A+EE+P A R ++ +RR S PR
Sbjct: 366 KAKEESPSKAGMNKRRKLKNKRRRSLPR 393
>gi|27262649 ataxin 2 related protein isoform C [Homo sapiens]
Length = 1097
Score = 26.2 bits (56), Expect = 6.0
Identities = 15/36 (41%), Positives = 17/36 (47%)
Query: 10 ETPGPASTASRTRVHQQRRGSAPRGGRESRSRRGGR 45
E+P AS + QR PRGG S RGGR
Sbjct: 338 ESPSLASREGKYIPLPQRVREGPRGGVRCSSSRGGR 373
>gi|166795262 AE binding protein 2 isoform a [Homo sapiens]
Length = 503
Score = 26.2 bits (56), Expect = 6.0
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 6 RAREETPGPASTASRTRVHQQRRGSAPR 33
+A+EE+P A R ++ +RR S PR
Sbjct: 366 KAKEESPSKAGMNKRRKLKNKRRRSLPR 393
>gi|27262647 ataxin 2 related protein isoform A [Homo sapiens]
Length = 1075
Score = 26.2 bits (56), Expect = 6.0
Identities = 15/36 (41%), Positives = 17/36 (47%)
Query: 10 ETPGPASTASRTRVHQQRRGSAPRGGRESRSRRGGR 45
E+P AS + QR PRGG S RGGR
Sbjct: 338 ESPSLASREGKYIPLPQRVREGPRGGVRCSSSRGGR 373
>gi|27262651 ataxin 2 related protein isoform D [Homo sapiens]
Length = 1044
Score = 26.2 bits (56), Expect = 6.0
Identities = 15/36 (41%), Positives = 17/36 (47%)
Query: 10 ETPGPASTASRTRVHQQRRGSAPRGGRESRSRRGGR 45
E+P AS + QR PRGG S RGGR
Sbjct: 338 ESPSLASREGKYIPLPQRVREGPRGGVRCSSSRGGR 373
>gi|226509740 SR-related CTD-associated factor 1 [Homo sapiens]
Length = 1312
Score = 25.8 bits (55), Expect = 7.8
Identities = 11/40 (27%), Positives = 21/40 (52%)
Query: 6 RAREETPGPASTASRTRVHQQRRGSAPRGGRESRSRRGGR 45
R R +P PA+++S + ++ RG GG + ++ R
Sbjct: 609 RRRSASPPPATSSSSSSRRERHRGKHRDGGGSKKKKKRSR 648
>gi|51173735 ras responsive element binding protein 1 isoform 2 [Homo
sapiens]
Length = 1687
Score = 25.8 bits (55), Expect = 7.8
Identities = 11/22 (50%), Positives = 12/22 (54%)
Query: 12 PGPASTASRTRVHQQRRGSAPR 33
PGPAST S T GS P+
Sbjct: 1089 PGPASTGSNTTASDSLGGSVPK 1110
>gi|51173737 ras responsive element binding protein 1 isoform 1 [Homo
sapiens]
Length = 1742
Score = 25.8 bits (55), Expect = 7.8
Identities = 11/22 (50%), Positives = 12/22 (54%)
Query: 12 PGPASTASRTRVHQQRRGSAPR 33
PGPAST S T GS P+
Sbjct: 1089 PGPASTGSNTTASDSLGGSVPK 1110
>gi|8850232 protocadherin gamma subfamily A, 12 isoform 1 precursor
[Homo sapiens]
Length = 932
Score = 25.8 bits (55), Expect = 7.8
Identities = 11/30 (36%), Positives = 16/30 (53%)
Query: 14 PASTASRTRVHQQRRGSAPRGGRESRSRRG 43
P S A+ T +R G AP GG ++ + G
Sbjct: 898 PGSNATLTNAAGKRDGKAPAGGNGNKKKSG 927
>gi|14277679 protocadherin gamma subfamily C, 3 isoform 3 [Homo
sapiens]
Length = 134
Score = 25.8 bits (55), Expect = 7.8
Identities = 11/30 (36%), Positives = 16/30 (53%)
Query: 14 PASTASRTRVHQQRRGSAPRGGRESRSRRG 43
P S A+ T +R G AP GG ++ + G
Sbjct: 100 PGSNATLTNAAGKRDGKAPAGGNGNKKKSG 129
>gi|14277675 protocadherin gamma subfamily C, 3 isoform 1 precursor
[Homo sapiens]
Length = 934
Score = 25.8 bits (55), Expect = 7.8
Identities = 11/30 (36%), Positives = 16/30 (53%)
Query: 14 PASTASRTRVHQQRRGSAPRGGRESRSRRG 43
P S A+ T +R G AP GG ++ + G
Sbjct: 900 PGSNATLTNAAGKRDGKAPAGGNGNKKKSG 929
>gi|11128025 protocadherin gamma subfamily C, 4 isoform 1 precursor
[Homo sapiens]
Length = 938
Score = 25.8 bits (55), Expect = 7.8
Identities = 11/30 (36%), Positives = 16/30 (53%)
Query: 14 PASTASRTRVHQQRRGSAPRGGRESRSRRG 43
P S A+ T +R G AP GG ++ + G
Sbjct: 904 PGSNATLTNAAGKRDGKAPAGGNGNKKKSG 933
>gi|11128023 protocadherin gamma subfamily C, 5 isoform 1 precursor
[Homo sapiens]
Length = 944
Score = 25.8 bits (55), Expect = 7.8
Identities = 11/30 (36%), Positives = 16/30 (53%)
Query: 14 PASTASRTRVHQQRRGSAPRGGRESRSRRG 43
P S A+ T +R G AP GG ++ + G
Sbjct: 910 PGSNATLTNAAGKRDGKAPAGGNGNKKKSG 939
>gi|209862765 RUN and SH3 domain containing 2 [Homo sapiens]
Length = 1516
Score = 25.8 bits (55), Expect = 7.8
Identities = 15/30 (50%), Positives = 15/30 (50%), Gaps = 2/30 (6%)
Query: 12 PGPASTASRTRVHQQR--RGSAPRGGRESR 39
PGPA S H QR R A GG ESR
Sbjct: 649 PGPALPGSPANSHTQRDARARADGGGTESR 678
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.312 0.126 0.379
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,270,093
Number of Sequences: 37866
Number of extensions: 82006
Number of successful extensions: 548
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 490
Number of HSP's gapped (non-prelim): 64
length of query: 45
length of database: 18,247,518
effective HSP length: 19
effective length of query: 26
effective length of database: 17,528,064
effective search space: 455729664
effective search space used: 455729664
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.