Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: LOC100293198 Sequence: fasta or formatted (146aa) NCBI GI: 239753967
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            10.3         15           2
 C cysteine            3.4          5           1
 D aspartate           0.7          1           1
 E glutamate           5.5          8           2
 F phenylalanine       0.0          0           0
 G glycine            11.6         17           2
 H histidine           2.7          4           1
 I isoleucine          0.0          0           0
 K lysine              0.0          0           0
 L leucine            12.3         18           2
 M methionine          1.4          2           1
 N asparagine          0.7          1           1
 P proline            15.8         23           2
 Q glutamine           4.1          6           1
 R arginine            9.6         14           1
 S serine              5.5          8           1
 T threonine           2.7          4           1
 V valine             11.0         16           4
 W tryptophan          2.1          3           1
 Y tyrosine            0.7          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100290441          1.000   PREDICTED: hypothetical protein XP_002346707 
LOC100288152          0.993   PREDICTED: hypothetical protein XP_002342538 
IRS2                  0.042   insulin receptor substrate 2 
LOC643827             0.035   PREDICTED: similar to cell recognition molecule CAS...
LOC388906             0.035   PREDICTED: hypothetical protein 
LOC388906             0.035   PREDICTED: hypothetical protein 
LOC388906             0.035   PREDICTED: hypothetical protein 
TSC2                  0.028   tuberous sclerosis 2 isoform 4 
TSC2                  0.028   tuberous sclerosis 2 isoform 1 
TSC2                  0.028   tuberous sclerosis 2 isoform 5 
NCAN                  0.028   chondroitin sulfate proteoglycan 3 
LOC100290496          0.028   PREDICTED: hypothetical protein XP_002348126 
FAM47C                0.028   hypothetical protein LOC442444 
LOC100290892          0.025   PREDICTED: hypothetical protein XP_002346639 
SSPO                  0.025   SCO-spondin 
CHD8                  0.025   chromodomain helicase DNA binding protein 8 
FZD8                  0.025   frizzled 8 
FLJ20021              0.021   PREDICTED: hypothetical protein 
FLJ20021              0.021   PREDICTED: hypothetical protein 
FLJ20021              0.021   PREDICTED: hypothetical protein 
ZNF837                0.021   zinc finger protein 837 isoform 1 
ZNF837                0.021   zinc finger protein 837 isoform 2 
LOC100292406          0.018   PREDICTED: hypothetical protein 
LOC100291258          0.018   PREDICTED: hypothetical protein XP_002346915 
LOC100288357          0.018   PREDICTED: hypothetical protein XP_002342745 
LOC100288357          0.018   PREDICTED: hypothetical protein 
COL27A1               0.018   collagen, type XXVII, alpha 1 
NCR2                  0.018   natural cytotoxicity triggering receptor 2 
ZNF628                0.018   zinc finger protein 628 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press